prot_C-australica_Contig_980.2.1 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-australica_Contig_980.2.1
Unique Nameprot_C-australica_Contig_980.2.1
Typepolypeptide
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length254
Homology
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BLAST of mRNA_C-australica_Contig_980.2.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.780e-23
Identity = 68/198 (34.34%), Postives = 100/198 (50.51%), Query Frame = 0 
Query:   37 YQVTHAGLLWGILAVSWSQIFYHITKTLFLVATREKGGDKWWWGATGHIIQALGWGMASGCASYDFWSQAL--PSYVGSADIPKRKRLQVWLWMYFVLSLACALPSYIFDYEADRHAG----GFMAVVGDAELWSLLLSGIAVIIAGFSAFRGSKVRRLDYAPTAEFTCGFLSAMTFSWFGPVMRVGQRRYLDFVDLP 228
            Y VT  G+LW  L++SW    Y   + +  V     G D   + ++   +  + W  AS   S D W +A   PS +GS  +P R++L    W ++ LS   AL + I   +   H G    G ++VV D  LW+++   +A+     S  RG++V      P  EFT  FLSA  FSWF PV+ +GQ++ LDF DLP
Sbjct:   70 YNVTATGVLWSTLSISWGLCIYQGVRAI--VELVRHGADTTVFVSS--TVLCIAWAAASVLRSRDHWREAAKEPS-IGSDGLPARRKLWWVFWPFYNLSFMTALVAVI---DRAGHGGKSWSGVVSVVADDRLWNVVALALALSFVSHSVARGAEVTLCTRKPNGEFTARFLSAGLFSWFSPVIDIGQKKQLDFDDLP 259
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_980.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4L0_9PHAE9.780e-2334.34ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_980contigC-australica_Contig_980:3103..5325 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_980.2.1mRNA_C-australica_Contig_980.2.1Chrysoparadoxa australica CS_1217mRNAC-australica_Contig_980 3094..5325 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-australica_Contig_980.2.1 ID=prot_C-australica_Contig_980.2.1|Name=mRNA_C-australica_Contig_980.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=254bp
MVWWKGWRRSTKRVGLVSQDLSQRLIEGGGHEGGGVYQVTHAGLLWGILA
VSWSQIFYHITKTLFLVATREKGGDKWWWGATGHIIQALGWGMASGCASY
DFWSQALPSYVGSADIPKRKRLQVWLWMYFVLSLACALPSYIFDYEADRH
AGGFMAVVGDAELWSLLLSGIAVIIAGFSAFRGSKVRRLDYAPTAEFTCG
FLSAMTFSWFGPVMRVGQRRYLDFVDLPHLNHKERSKYNTAALQHELKVN
HRKL
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