mRNA_C-australica_Contig_98.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.1.1
Unique NamemRNA_C-australica_Contig_98.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:576..1945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size648
Hectar predicted targeting categoryother localisation
Exons4
Cds size471
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.1.1prot_C-australica_Contig_98.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 585..1611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.4430487-UTR-C-australica_Contig_98:575..5841682588845.4430487-UTR-C-australica_Contig_98:575..584Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 576..584 -
1682588845.4877858-UTR-C-australica_Contig_98:1611..16141682588845.4877858-UTR-C-australica_Contig_98:1611..1614Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 1612..1614 -
1682588845.4982164-UTR-C-australica_Contig_98:1780..19451682588845.4982164-UTR-C-australica_Contig_98:1780..1945Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 1781..1945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.4547877-CDS-C-australica_Contig_98:584..6601682588845.4547877-CDS-C-australica_Contig_98:584..660Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 585..660 -
1682588845.4663653-CDS-C-australica_Contig_98:978..10981682588845.4663653-CDS-C-australica_Contig_98:978..1098Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 979..1098 -
1682588845.4769084-CDS-C-australica_Contig_98:1336..16111682588845.4769084-CDS-C-australica_Contig_98:1336..1611Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 1337..1611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.1.1

>prot_C-australica_Contig_98.1.1 ID=prot_C-australica_Contig_98.1.1|Name=mRNA_C-australica_Contig_98.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=157bp
MKTQVATAVTTAAVPLPVPEPDSRLLSKSAPNRPSGRARCCDSEGDSDSS
SVSSVNGSVAGAGAGVATSSSGEEWVRSQLQLAAAARVERERIPEGMAPT
DTVTLPGSPPLSNKAGTVSTQKRRVLSQSCLRAKHGFTKFTISSKAQQLL
QQQGES*
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mRNA from alignment at C-australica_Contig_98:576..1945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.1.1 ID=mRNA_C-australica_Contig_98.1.1|Name=mRNA_C-australica_Contig_98.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1370bp|location=Sequence derived from alignment at C-australica_Contig_98:576..1945- (Chrysoparadoxa australica CS_1217)
GGGAGGGACGGAGGGCGTGAAAGTGACAGAGACATTGTGGCTGATGCCAA
GGGTGCTACCAGTTGCCGTGAAGTTGAAGTTGATGATGAGGAAGAGTCGC
CCTGGGATAAAGCCTTGGCGGAGAGGGACGTGGACCAAGGCGTAGAGTTC
GATGACTACAAAGAGGTGACTATACGGAAAGATGCGTGTGGCCTATGGTG
CACGTGACCTAAAGCAGCACGTGACCTAGCTTGTTTGTGTGGCTTGTTGC
ATAGACCAAGGCATGGCATAGTAGAGCGAGCATGAGGTGAAGCAGGCAAC
CCGCGTCATGCATGCCACGAATTCCCCACAGGATATGAAGACCCAAGTTG
CTACCGCTGTTACGACTGCTGCAGTACCATTACCTGTACCTGAACCAGAC
AGCAGGCTGCTGTCGAAGTCAGCACCAAATAGGCCATCAGGAAGAGCTAG
ATGCTGTGATAGTGAAGGTGACAGTGACTCATCAAGTGTAAGCAGCGTCA
ATGGCAGCGTGGCTGGAGCCGGAGCTGGAGTTGCCACGAGCAGCAGCGGT
GAGGAGTGGGTGAGGTCACAGCTGCAGCTAGCTGCTGCAGCCAGGGTGGA
GAGAGAAAGGTGAGTGCTGACAGTTCAGCTCTGCCAAGAGGCTCAGCACC
CTGCAACGACACCTGTCAACCACTGCCTGTCATGATCAAGGCCTCGTTGG
AAACGTTCGGCCCCTTCAAGTACTCGAGGGCATTCTCTTTCACCGATGGC
TACTTGAGTACCCAGAGCCCTGCAAGCTGCTGCTGCGGCCTCGCCAACCT
ACCCATTTACTAATAGTCTGCCTGTTATCCTCCACCTTGTCAACCAGAAT
TCCTGAGGGAATGGCTCCCACTGATACGGTGACCCTGCCAGGAAGCCCCC
CCCTCAGCAACAAGGCAGGCACAGTGAGCACCCAGAAGAGGAGGGTGCTC
TCGCAGTCATGCCTAAGGTATGGCGCTGCCTTGTTTTGAGTACTGTAAGC
CTGACGAGACTGAGAGGGGTGAGGCCTGCAGCATTAGGGGTCAGTCGTGA
GTGAGCTGTTAGGAGTGGCAGAGCGAGAGGTAACATTAGAGCACTGTGAG
ATCAGGTTGGTTGGCTTGGGTGGGACTTTGGTACCCACCCAGTGGCATTC
AACAGAGAGTCGTACAGGTAGCATACTGGTAGGTAAGGTATCTAATCCAA
GGCAGGGAAGTCTGGAGAACTTTTAGGCTCACCCACACTGAGCATTAATG
CCCTTGGCTAAAATCACTTCCTCCGCTTCCTCTAGGGCAAAACATGGCTT
CACTAAATTCACTATCTCCAGTAAGGCCCAGCAGCTGCTCCAGCAGCAGG
GGGAGAGCTAGATCCAGGGT
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Coding sequence (CDS) from alignment at C-australica_Contig_98:576..1945-

>mRNA_C-australica_Contig_98.1.1 ID=mRNA_C-australica_Contig_98.1.1|Name=mRNA_C-australica_Contig_98.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=471bp|location=Sequence derived from alignment at C-australica_Contig_98:576..1945- (Chrysoparadoxa australica CS_1217)
ATGAAGACCCAAGTTGCTACCGCTGTTACGACTGCTGCAGTACCATTACC
TGTACCTGAACCAGACAGCAGGCTGCTGTCGAAGTCAGCACCAAATAGGC
CATCAGGAAGAGCTAGATGCTGTGATAGTGAAGGTGACAGTGACTCATCA
AGTGTAAGCAGCGTCAATGGCAGCGTGGCTGGAGCCGGAGCTGGAGTTGC
CACGAGCAGCAGCGGTGAGGAGTGGGTGAGGTCACAGCTGCAGCTAGCTG
CTGCAGCCAGGGTGGAGAGAGAAAGAATTCCTGAGGGAATGGCTCCCACT
GATACGGTGACCCTGCCAGGAAGCCCCCCCCTCAGCAACAAGGCAGGCAC
AGTGAGCACCCAGAAGAGGAGGGTGCTCTCGCAGTCATGCCTAAGGGCAA
AACATGGCTTCACTAAATTCACTATCTCCAGTAAGGCCCAGCAGCTGCTC
CAGCAGCAGGGGGAGAGCTAG
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