mRNA_C-australica_Contig_979.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_979.5.1
Unique NamemRNA_C-australica_Contig_979.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.530e-62
Identity = 130/296 (43.92%), Postives = 182/296 (61.49%), Query Frame = 2
Query:  968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816
            VQAEM+ + A ++  ++  GP+ SW+ SF+ WA             G    +D    FY +L+ FL      RF  D+ F ++G I ISR   +    VD ++++ AL D R+  + STL+P+PFA+S     +EQF+VI  EL ++F L L AV  LSL +LG +   LL    + V+D E+LG +Y+W L+V+SIT I LIMAVGLVVDY VH + YFLHQDP I ++ R A AL E+G SV  G  TTFL I+ LAF+ N +FRVFF+MF  I+     HG+V +PV+L+ +P
Sbjct:  602 VQAEMQSVDAEMIETKNVDGPLDSWLASFIVWAEANTTYSANVGTSGGYPVYDDRDTFYTALSAFLADEDNARFVPDVVFDDEGLIKISRSDMYLVNLVDTENNVDALRDTREVADQSTLDPQPFAYSGVFVFSEQFVVIYNELLSSFGLALLAVLALSLFVLGKVTIVLLVCLTLVVIDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPRIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGFFHGVVFIPVMLSILP 897          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 2.060e-60
Identity = 130/296 (43.92%), Postives = 178/296 (60.14%), Query Frame = 2
Query:  968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816
            VQAEM+     ++  E   GPV SW+ SF+ WA             G    ++    FY +L+ F       RF  D+ F +DGTI ISR   F  G  D + ++ AL   R+ V+ S L+P PFA+S+    +EQF+VI GEL ++F L LAAVF LSLL+LG +   +L    + +VD E+LG +Y + L+V+SIT I LIMAVGLVVDY VH + YFLHQDP   ++ R A AL E+G S+  G  TTFL I+ L F+ N +FRVFF+MF  I+     HG+V +PV+L+ +P
Sbjct:  492 VQAEMQSTDDLLLENEFVEGPVDSWLTSFIEWAESSDTYSANVGTSGGYVVYEDRATFYTALSAFTEDGANARFLGDVVFNDDGTIKISRSDMFLVGLTDTEKNVDALRGTREVVDQSALDPAPFAYSEVFVSSEQFVVIYGELMSSFGLALAAVFALSLLVLGKVAVVVLVCVTLVIVDAELLGFVYLYGLDVNSITVIQLIMAVGLVVDYMVHLVHYFLHQDPRTPKDTRIADALGEIGPSLLMGAGTTFLGIMPLVFAHNVIFRVFFKMFLVIISFGFYHGVVFVPVMLSILP 787          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 2.420e-58
Identity = 125/296 (42.23%), Postives = 179/296 (60.47%), Query Frame = 2
Query:  968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816
            VQAEM+ +   ++  ++ + P+ SW+ SF+ WA             G    +D    FY +L+ FL      RF  D+ F ++G I ISR   +    VD   ++  L D R+  + STL+P+PFA+S     +EQ++VI  EL ++F L L AV  LSL +LG +   LL    + ++D E+LG +Y+W L+V+SIT I LIMAVGLVV+Y VH + YFLHQDP+I ++ R A AL E+G SV  G  TTFL I+ LAF+ N +FRVFF+MF  I+     HG+V +PVLL+ +P
Sbjct:  630 VQAEMQSVDEEMLELKNVAAPLDSWLVSFIVWAEVNTTYSANIGTSGGYPVYDDRDTFYTALSAFLADEDNARFLADVVFDDEGIIKISRSEMYLINLVDTDKNVDVLRDTREVADQSTLDPQPFAYSAVFLFSEQYVVIYNELLSSFGLALLAVLVLSLFVLGKVTVVLLVCVTLIIIDVELLGFVYHWNLDVNSITVIELIMAVGLVVEYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGFFHGVVFIPVLLSMLP 925          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY88_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY88_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 2.430e-55
Identity = 124/282 (43.97%), Postives = 168/282 (59.57%), Query Frame = 2
Query:  968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVI 1774
            VQAE++ +   ++   +  GPV SW+ SF+ WA             G    +D    FY +L+ FL      RF  D+ F +DG I ISR   F    VD  +++ AL D R+  + STL+P+PFA+S     TEQ+LVI  EL  +F L L AV  LSL +LG +   +L    + ++D E+LG +Y+W L V+SIT I LIMAVGLVVDY VH + YFLHQDP+I ++ R A AL E+G SV  G  TTFL I+ LAF+ N +FRVFF+MF  I+   V+
Sbjct:  553 VQAEIQSIDDEMLELNNVDGPVDSWLASFIVWAEANTTYSANVGTSGGYPVYDDRDTFYTALSAFLEDEDNARFLEDVVFDDDGLIKISRSEMFLINLVDTDNNLDALLDTREVSDQSTLDPQPFAYSDVFGFTEQYLVIYDELLASFGLALLAVLILSLFVLGKVAIVVLVCVTLVIIDVELLGFVYHWNLNVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIADALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGVV 834          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A6H5L5K0_9PHAE (SSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K0_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.560e-55
Identity = 120/277 (43.32%), Postives = 166/277 (59.93%), Query Frame = 2
Query:  968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWAGPAATFDTPT-------------KFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIV 1759
            VQAEM+ + A ++  ++  GP+ SW+ SF+ WA    T+                  FY +L+ FL      RF  D+ F ++G I ISR   +    VD ++++ AL D RD  + STL+P+PFA+S     +EQF+VI  EL ++F L L AV  LSL +LG +            +D E+LG +Y+W L+V+SIT I LIMAVGLVVDY VH + YFLHQDP+I ++ R A AL E+G SV  G  TTFL I+ LAF+ N +FRVFF+MF  I+
Sbjct:  469 VQAEMQSVDAEMIETKNVDGPLDSWLASFIVWAEANTTYSANVGTSGGYPVYNDRDTFYTALSAFLADEDNARFVPDVIFDDEGLIKISRSDMYLVNLVDTENNVDALRDTRDVADQSTLDPQPFAYSGVFVFSEQFVVIYNELLSSFGLALLAVLALSLFVLGKVM-----------IDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVII 734          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.550e-53
Identity = 116/284 (40.85%), Postives = 172/284 (60.56%), Query Frame = 3
Query:   18 VKARRVLSCGGIYLILLSVVAGYGLASAFGIPFTSLAGILPFVLLGVGVDNMFIIISSCDSINKALPTYERVGLGLRRCGMSVLNTTSVNFLAFMLGSLTSLPGVKFFTLYAGLSVLTTGVLSMTAFVALVAWDLERQSNGIYDVLCCVTKAPKVSN----------------GGLGRSRSPSPYKADSTGEKSE-SALGKWVKERYAPSLMSPVGKALVMLLSLALLGTSVYGVTQVQDGFELLDLVPDKSFARDFISGAREYNLFIDDFFVPAAIYYEDIDY 818
            VK R  L  GG+ L++ + +A YG+ S F IPFT L+ ILPF+L+G+GVD+MF+I+++ D  + +L   ER+ LG++RCG+SV  T+  NF AFMLGS++SLP V++F LYAG ++L    L MTAFVAL+  D  RQ  G  D  CC T    +                    +G     S    D   E  + S++G+++KE+Y+P ++S  GKALV+L S  LL   +YGVTQ   GF+ LDL PD  ++ ++   AR Y+  I +++VP  +Y +++DY
Sbjct:  291 VKRRSWLGVGGVMLVVAAGLAAYGINSGFDIPFTPLSRILPFILIGIGVDDMFVIVAAYDHTDPSLAVEERIALGVKRCGVSVTYTSLTNFFAFMLGSMSSLPAVEYFCLYAGTAILFDFFLQMTAFVALLTMDANRQKAGKIDSCCCFTSKKYLREQERQHQEGVPRGVTLPASIGERVDMSRRALDRKAEVHQISSIGRFMKEKYSPFVLSAKGKALVLLGSAGLLAAGIYGVTQATQGFDALDLAPDGHYSIEYTEKARSYDFDIQEWYVPINVYTQEVDY 574          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D8LCK9_ECTSI (Similar to Patched domain-containing protein 3, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK9_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 3.230e-49
Identity = 114/277 (41.16%), Postives = 158/277 (57.04%), Query Frame = 2
Query:  968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRW-------------AGPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIV 1759
            VQA+++   + +V      GP+ SW+   L W             +G    ++    FY +LA F       RF +D  ++ DGTI ISR   +       ++ I AL+D R+ V  STL+P+P AFS     +EQFLVI  EL  NF++ L AV   S+ ILG  +   L    + ++D E+LG +Y+W+L+V+S+T I LIMAVGLVVDY VH + YFLHQDP   ++ R A  L E+G SV  G  TTFL I  +AF+ N VFRVFF+MF  I+
Sbjct:  570 VQAQIQGTDSLMVDQRFVVGPITSWLSGLLSWTANHTEYSTNVGTSGGYPVYEDRDTFYTALAEFTQDGDNSRFLSDFVYKTDGTIEISRTTMYLIDLTSTENGINALKDSREVVGESTLDPQPLAFSAYFVFSEQFLVIYDELMMNFVMALVAVAVFSVFILGRWKIIALVCFTLVIIDVELLGFVYHWRLDVNSLTVIELIMAVGLVVDYMVHIVHYFLHQDPDRDKDVRIADGLGEIGPSVVVGAATTFLGITPMAFAANHVFRVFFKMFLIII 846          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A7S2WB03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB03_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.940e-45
Identity = 118/320 (36.88%), Postives = 166/320 (51.88%), Query Frame = 2
Query:  956 HSAEVQAEMRRLQASVVA--GEHASGPVLSWMESFLRWA-GPAATFDTP----------TKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGI-------SRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIPVSDDEQVASPKAS 1855
            H  +VQ  M  L+   ++  G    GPV SW+ SF  W     + ++T           T FY+++  F    +  RF+TD+ F      G+       SRV  +H G  D    I A+ D RD ++ + L   P  FS  +   E  LV+  EL  N    L AV  +SLLIL      LL   +I V+D EI+G++Y+W L V+++T + L+MAVGLVVDY  H L Y+L Q       ER   ALVE+G SV  G  TTFL ++ LAF+ + +FR FFRMF SI+V    HGL+ LP ++  +P  D  +   P+ S
Sbjct:    7 HDQDVQEGMLELEDDFLSLKGGFTEGPVTSWIRSFTTWVQSDTSPYNTSVNADGYLVNETLFYEAVLHFTQLELYTRFDTDVVFHNVTINGVPSLRIRNSRVSAYHVGLGDPLDEIDAMLDSRDLMKKADLPRTPIVFSPTYVNIETELVLPEELTLNLAFALVAVTIVSLLILVRPTAVLLVSMIICVIDVEIIGTMYFWGLNVNTVTVVQLVMAVGLVVDYTAHILHYYLQQPFHKEPMERLRDALVEIGPSVLLGCFTTFLGVMPLAFAQSVIFRTFFRMFLSIIVYGAAHGLIFLPAIIPSLPFGDVSEYVDPEKS 326          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A835YJJ3_9STRA (Patched family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ3_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.690e-43
Identity = 100/274 (36.50%), Postives = 163/274 (59.49%), Query Frame = 3
Query:   18 VKARRVLSCGGIYLILLSVVAGYGLASAFGIPFTSLAGILPFVLLGVGVDNMFIIISSCDSINKALPTYERVGLGLRRCGMSVLNTTSVNFLAFMLGSLTSLPGVKFFTLYAGLSVLTTGVLSMTAFVALVAWDLERQSNGIYDVLCCVTKAPKVSNGGLGRSR--------SPSPYKADSTGEKSESALGKWVKERYAPSLMSPVGKALVMLLSLALLGTSVYGVTQVQDGFELLDLVPDKSFARDFISGAREYNLFIDDFFVPAAIYYEDID 815
            VK R  L    +  I++S    YGL +AFG+PFTSL  +LPF+L+G+G+D+ FI+  + D +N  LPT ER+   + RCG+SV  T+ +NF+ FMLG+ ++LP +++F +YAG++VL   +L + +F+AL+A+D +RQ    YD+LCC                        +P P + +S    S S +G+ +K  + P+L++  G      L L ++   ++GVTQV  G E+LDLVPD S+AR++++ AR + +F  D   P  + ++ +D
Sbjct:  336 VKGRARLGLICVTCIVISGAGAYGLCAAFGVPFTSLQQVLPFLLIGIGLDDAFIMAGALDLVNPDLPTAERIAEAMGRCGLSVFYTSIINFMVFMLGANSTLPAIEYFCIYAGVAVLFDFLLQVPSFIALLAYDTDRQRARKYDLLCCXXXXXXXXXXXXXXXXXXXXXAQGTPPPVQLESG---STSRVGRVLKRHFIPNLLTVPGALAAGTLLLGIMAVCIWGVTQVGQGLEILDLVPDSSYAREYVTVARAFYMFPYDNVQPLQLVFDALD 606          
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.090e-42
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 2
Query: 1190 ISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816
            ISR   +    VD  + +  LED R+  + STL+P+ FA+S      EQ+L I  EL ++F L L AV  LSL +LG +           ++D E+LG +Y+W L+++ IT I LIMAVGLVVDY VH + YFLHQDP+I ++ R A AL E+G SV  G  TTFL I+ LAF+ N +FRVFF MF  I+     HG+V +PV+L+ +P
Sbjct:  322 ISRSEMYLINLVDTDNKVDTLEDKREVADQSTLDPQAFAYSDMFLFAEQYLAIYNELLSSFGLALLAVLVLSLFVLGKV-----------IIDVELLGFVYHWNLDMNGITAIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMAGAATTFLGIMPLAFANNVIFRVFFNMFLVIISFGFFHGVVFIPVVLSILP 519          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY89_ECTSI3.530e-6243.92Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
D8LCK4_ECTSI2.060e-6043.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY95_ECTSI2.420e-5842.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY88_ECTSI2.430e-5543.97SSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5K0_9PHAE2.560e-5543.32SSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FY98_ECTSI3.550e-5340.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCK9_ECTSI3.230e-4941.16Similar to Patched domain-containing protein 3, pa... [more]
A0A7S2WB03_9STRA1.940e-4536.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YJJ3_9STRA5.690e-4336.50Patched family-domain-containing protein n=1 Tax=T... [more]
A0A6H5JGQ4_9PHAE1.090e-4245.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_979contigC-australica_Contig_979:10768..15159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY89
PFAMsPatched
Model size2446
Max annot lvl2759|Eukaryota
KEGG koko:K07752
Hectar predicted targeting categoryother localisation
Exons17
Evalue2.25e-65
EggNOG OGsKOG1934@1|root,KOG1934@2759|Eukaryota
Ec32 ortholog descriptionPatched
Ec32 orthologEc-24_003290.1
EC3.4.17.22
Descriptionmolting cycle, collagen and cuticulin-based cuticle
Cds size1038
COG categoryG
BRITEko00000,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.0483913-UTR-C-australica_Contig_979:10767..111961682588845.0483913-UTR-C-australica_Contig_979:10767..11196Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 10768..11196 -
1682588845.192318-UTR-C-australica_Contig_979:13496..137981682588845.192318-UTR-C-australica_Contig_979:13496..13798Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 13497..13798 -
1682588845.2010326-UTR-C-australica_Contig_979:13885..139531682588845.2010326-UTR-C-australica_Contig_979:13885..13953Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 13886..13953 -
1682588845.210688-UTR-C-australica_Contig_979:14083..141321682588845.210688-UTR-C-australica_Contig_979:14083..14132Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 14084..14132 -
1682588845.2211716-UTR-C-australica_Contig_979:14287..144621682588845.2211716-UTR-C-australica_Contig_979:14287..14462Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 14288..14462 -
1682588845.2397454-UTR-C-australica_Contig_979:14528..146201682588845.2397454-UTR-C-australica_Contig_979:14528..14620Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 14529..14620 -
1682588845.2571557-UTR-C-australica_Contig_979:14724..148791682588845.2571557-UTR-C-australica_Contig_979:14724..14879Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 14725..14879 -
1682588845.2708466-UTR-C-australica_Contig_979:15021..151591682588845.2708466-UTR-C-australica_Contig_979:15021..15159Chrysoparadoxa australica CS_1217UTRC-australica_Contig_979 15022..15159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.068396-CDS-C-australica_Contig_979:11196..112801682588845.068396-CDS-C-australica_Contig_979:11196..11280Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 11197..11280 -
1682588845.0841334-CDS-C-australica_Contig_979:11520..115861682588845.0841334-CDS-C-australica_Contig_979:11520..11586Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 11521..11586 -
1682588845.0958586-CDS-C-australica_Contig_979:11702..117861682588845.0958586-CDS-C-australica_Contig_979:11702..11786Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 11703..11786 -
1682588845.105466-CDS-C-australica_Contig_979:11890..119441682588845.105466-CDS-C-australica_Contig_979:11890..11944Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 11891..11944 -
1682588845.117266-CDS-C-australica_Contig_979:12034..121961682588845.117266-CDS-C-australica_Contig_979:12034..12196Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 12035..12196 -
1682588845.127389-CDS-C-australica_Contig_979:12328..123881682588845.127389-CDS-C-australica_Contig_979:12328..12388Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 12329..12388 -
1682588845.1376324-CDS-C-australica_Contig_979:12606..126721682588845.1376324-CDS-C-australica_Contig_979:12606..12672Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 12607..12672 -
1682588845.1482494-CDS-C-australica_Contig_979:12802..129111682588845.1482494-CDS-C-australica_Contig_979:12802..12911Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 12803..12911 -
1682588845.1591504-CDS-C-australica_Contig_979:12992..131071682588845.1591504-CDS-C-australica_Contig_979:12992..13107Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 12993..13107 -
1682588845.170114-CDS-C-australica_Contig_979:13181..132271682588845.170114-CDS-C-australica_Contig_979:13181..13227Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 13182..13227 -
1682588845.1838472-CDS-C-australica_Contig_979:13304..134961682588845.1838472-CDS-C-australica_Contig_979:13304..13496Chrysoparadoxa australica CS_1217CDSC-australica_Contig_979 13305..13496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_979.5.1prot_C-australica_Contig_979.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_979 11197..13496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_979.5.1

>prot_C-australica_Contig_979.5.1 ID=prot_C-australica_Contig_979.5.1|Name=mRNA_C-australica_Contig_979.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=346bp
MRRLQASVVAGEHASGPVLSWMESFLRWAGPAATFDTPTKFYQSLAVFLG
SAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVES
STLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLR
HALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTL
FYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFR
VFFRMFFSIVVLAVIHGLVVLPVLLTFIPVSDDEQVASPKASTTPKVVTP
PPNESQLGVTWSEAVRDMVFPTEEEDVLDMAEMFSNEVPEVGADD*
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mRNA from alignment at C-australica_Contig_979:10768..15159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_979.5.1 ID=mRNA_C-australica_Contig_979.5.1|Name=mRNA_C-australica_Contig_979.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4392bp|location=Sequence derived from alignment at C-australica_Contig_979:10768..15159- (Chrysoparadoxa australica CS_1217)
GCAAGCCATTCAGCTTGGTCAAGGCCCGCAGAGTGCTGAGCTGCGGTGGA ATCTACCTCATTTTACTCTCCGTTGTGGCCGGCTACGGCCTTGCTTCTGC ATTTGGCATCCCGTTCACCTCCCTGGCAGGGATCTTACGTACGTTTGCTC ATGTTGACAGCGCATGACGGTCTGACCTCAGGCCTTAGATCTCACCCCTT CTGACTCACTCTAACCATAAGCTTAGATCTTTCCATCACCATAACCTGAA CCTTATCCTAACCTAACGTGGCCCTTGCAGCCTTTGTTCTGCTGGGAGTT GGTGTTGACAATATGTTCATCATAATTTCGAGCTGTGACTCTATCAACAA GGCCCTGCCCACCTATGAGAGGGTAGGCCTTGGGTTGAGACGCTGTGGAA TGAGCGTTCTCAACACCACCTCGGTCAACTTCCTGGTACGGCTTGCTTGG CTCAGCCTAGTGCATACCAATTCACTCCCTTGCGTTTCCATAGTCCTAAC AGGCTCATGCCCCTCTTTGACTGCTATGCTCTCTCTCAGGCCTTTATGCT GGGGTCACTTACCTCGCTACCAGGCGTGAAGTTCTTCACCCTCTATGCAG GCCTCAGCGTGCTCACCACAGGGGTCCTGAGGTAAGGAGGCCGTGGTGCT TCTTGCAGTACCTAAGCACTCCGTCTAACCTGCACCCCTCTGCCCAGTAT GACTGCATTTGTGGCCTTAGTGGCCTGGGACCTGGAAAGGCAGAGCAATG GCATCTATGACGTGCTGTGCTGTGTCACCAAGGCACCTAAAGTATCCAAT GGTGGCCTCGGCAGAAGCCGGTCACCTTCACCGTACAAAGCTGACTCAAC TGGGGAGAAGAGCGAGAGCGCGGTATGGCAACTGACAACTGCTTCCGCAT GCCACACTTTCTGATGAAATAACTCGGCTACAAGCTTTTGTTGTCTGACC TTCGGACTTATGTGTGCCACATGTTTTTACTCTCCCAACCCCAATCACTA ACTATCCTAACTATTTTACCCTAATAGCTTGGTAAGTGGGTTAAGGAACG CTATGCCCCGAGTTTGATGTCCCCAGGTAAGAACCATCAGATTATATCTG CTTGCACCTCTTGTTGCATCATGGCGTATGTCACGCTGACCCTCTATTTT ATGCCCAGGCTTACCTAACCTTGCTTGTCTTTTCTACTGCCAACCCCTTC ATTCAGTGGGAAAAGCTCTGGTGATGCTGCTGTCCCTGGCGTTGCTTGGC ACCTCAGTATACGGTGTCACACAGGTGCTTACACTGACTGGCATGGGAGC AGCCTTCTCACTAGCCAATGACTACTAAATGACTGAATGCTCCAACACCG TGGTGTTGCAGGTGCAAGATGGGTTTGAGCTGCTTGACCTTGTGCCGGAT AAGTCTTTCGCTCGTGACTTCATCTCCGGGGCCCGCGAGTACAACCTTTT CATCGATGACTTCTTTGTCCCTGCTGCTATCTACTATGAGGACATTGACT ATTCCAGGCAACTCAGCATCCTTCTGGTTATCGTGCTTATCTGCTTATCA CATGTATTTGGATTTGAACCTTCCACAACTCAAACCCAGGCCTAACAGTG CAAATCTTGCCGTATCCTTCTCACTGTCCCCTCGCTCCACACAGTGCTGA GGTACAGGCCGAGATGAGACGTTTGCAGGCGTCTGTGGTTGCAGGAGAAC ATGCCAGTGGCCCTGTGCTTAGTTGGATGGAAAGCTTTCTCCGCTGGGCC GGTCCTGCAGCAACGTTTGACACACCTACCAAGTTTTACCAATCTCTGGC TGTTTTTCTCGGGTCGGCAGTTGGGAAGAGATTTAACACTGATATTGACT TCCAGGTCAGCTTACTGTGGCATAACTCATCCCATGACATACTTGGCTTT CATGTTCCGCACTTACTCTTGGATGCACCCAGGAGGATGGCACCATTGGC ATCAGCCGGGTGCATTTCTTCCACCAAGGTGAGCAGTGCAACACTCTCCA CCAACTAGAGCAAGAGACCCACTTGTAAGGCTCAATGGTCAATGCTCTCC AGGCACAGTTGATGTCAAGTCCTCAATACAAGCACTGGAGGATGTGCGTG ACAGCGTCGAGTCCAGCACGCTAGAGCCAAAGCCATTCGCTTTCAGCAAG CAACATACCCTGACCGAGTGAGTTTGTTGCTGGCTGCTTGCTGTGCTTGC TCATTGGTCCTACTTCATCTTACCTTGCGCTGCCATTCATTGCTACAGGC AATTCCTCGTTATTAAAGGCGAGCTGGCAACCAATTTTCTGCTGGTTCTG GCTGCCGTATTTGGTCTAAGCCTGCTAATTCTGGGTTACCTACGTCATGC ACTGCTGGTCTGCACACACCCTCACGGATCAAAACAAACCAACTACAATT ATCTCACATGTCTAGTTATAATCAGCCTCAAAGATCACCCCCAGTCACTC TCAGTCGCCCTCAATCGCTGCCACGTGCCGTCTACAGGCTGTAGCCCTCA TCGCTGTTGTGGACTTTGAGATCCTGGGATCTATATACTACTGGCAGCTG GAGGTGGGACAGTGACAGTAACCCACATATTTATTTGCTCTCTCAGCTTC TCTCAGCTTGCATGCATTGATCCGCTCTTTGTGTTCTGCGGTTTATGCTG TCTTGCTAGCAAGCCAAGACAGCTTCTTTCAGCTGCTGGTATTGGGGATG GCTTACTCATCCCCAACCATAAAGTTGTGAATGTAAGCCTGAGTCTGACT GCCTTTTTCTTACCCCTGCAGGTTTCAAGCATCACAGGCATTGCCCTTAT TATGGCAGTGGGCCTTGTTGTCGATTACCAGGCAAGTCTCTCTCCACACT TGGTTGCCCCCACACATCCAGGCATTGCACTGCACTCATTGCCTCAGCCT CCTCCCCTCACTTACTCACTCACTCACTCGCCGCTGACTCTGGCTCCTGC ACCTTGCCTACAGGTGCATACCCTCTTCTACTTCTTGCACCAAGACCCAA CAATCTCACGTGAGGAGCGAGCTGCAGCAGCCCTAGTGGAGGTCGGGGCA TCGGTATTTCAGGGGGGCTGCACCACCTTCCTGAGCATTCTTGCACTGGC TTTCTCTGGCAACCAGGTCTTTCGGGTAAGCTGAGTGGAGATTGAGCTCT TAACCTGCCAGTCAACCACTACCGTCACCACGGACATCTCCCCACACACC CACACTATCCCTCAGGTCTTCTTCCGCATGTTTTTTTCCATTGTTGTGCT GGCCGTAATCCATGGATTGGTAATGATCCTAGCGCCAGCCACTCCCATGC TACCAGCACGTCACCTAACCAAACCTTTGCACCTTTGCTGCGGTTTTGCC TTGTACTTGTGGGACACTCAAAGGTGGTGCTCCCTGTACTGTTGACGTTC ATCCCAGTCAGCGACGATGAGCAAGTAGCCTCGCCCAAGGCGAGCACGAC ACCAAAGGTACCAGCATGGCAGATAGATTTGCATAACTCTTGCTGTTCTC ATCAACCCACGCTGCTGCCATCAACATGGTGCATGATGGTACTTTTTAAC TGTAACCAATGCAATACCGCTAGGTTGTCACTCCCCCGCCTAATGAGAGC CAGCTGGGCGTGACCTGGAGTGAAGCCGTCCGAGACATGGTGAGCTTGTG GTCGTAACCTGAGGCCTAGGAACCTGAGCAGAGAGTTCTGGGCACTGCAG TGAGCTGAGAGTCCATGGGCAGCTAGCTAAACTAGCCAACCAACACTGTC TCAGTTTGTCTTCTGTCAGCCTCTTTCTACATGATCATGTCGTACCCAGG GGCTGTAACAGCACTGTATACACTTCATATTGGCATGTGCATGCCTCTCA TTTTGACACTGCTGGCTTTGCACCCTCAGGTCTTTCCAACAGAAGAAGAA GATGTTCTTGACATGGCTGAGATGTTTAGCAATGAGGTGCCTGAGGTAGG CGCTGACGACTGATACGTGGTGACCTCTTTGGAGAGTGGAGGGGCAGAGC AAAGAGCCCTATGAGCTTGGGATGGGTCGATTGACATGACCTGCTGCTGC AGATGAAGCAAGCAGGGTGAATGCGTATTTGTGTGTTTATCTTTGGATGT GGTAAAAGAACATGACTTTTTTTGTGCCCTTTCTGTGCCTCCTGCAGGCC TGTGAGATAGAAAGTGGCCAAGATCCCTTTGCCACAACCCTTGGGGCCCA TGAGGCTGATGGGGTAGGGGAAGCAGTCATCCGTTCAGAGTTAGGGATGA AGAACCTAGGCAGAGCGAGGTTTGGCTTTACGAGGTAGAGCTCTGGCTTA GGCGGCCCGTTCTGCAGCAGCTTGGCTGCTTGTGTGCGTTGTAAATATAT GTGTGGGTGCTTTTTTTTGACGCCTCGAGAAGGCTAATAAAA
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Coding sequence (CDS) from alignment at C-australica_Contig_979:10768..15159-

>mRNA_C-australica_Contig_979.5.1 ID=mRNA_C-australica_Contig_979.5.1|Name=mRNA_C-australica_Contig_979.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1038bp|location=Sequence derived from alignment at C-australica_Contig_979:10768..15159- (Chrysoparadoxa australica CS_1217)
ATGAGACGTTTGCAGGCGTCTGTGGTTGCAGGAGAACATGCCAGTGGCCC
TGTGCTTAGTTGGATGGAAAGCTTTCTCCGCTGGGCCGGTCCTGCAGCAA
CGTTTGACACACCTACCAAGTTTTACCAATCTCTGGCTGTTTTTCTCGGG
TCGGCAGTTGGGAAGAGATTTAACACTGATATTGACTTCCAGGAGGATGG
CACCATTGGCATCAGCCGGGTGCATTTCTTCCACCAAGGCACAGTTGATG
TCAAGTCCTCAATACAAGCACTGGAGGATGTGCGTGACAGCGTCGAGTCC
AGCACGCTAGAGCCAAAGCCATTCGCTTTCAGCAAGCAACATACCCTGAC
CGAGCAATTCCTCGTTATTAAAGGCGAGCTGGCAACCAATTTTCTGCTGG
TTCTGGCTGCCGTATTTGGTCTAAGCCTGCTAATTCTGGGTTACCTACGT
CATGCACTGCTGGCTGTAGCCCTCATCGCTGTTGTGGACTTTGAGATCCT
GGGATCTATATACTACTGGCAGCTGGAGGTTTCAAGCATCACAGGCATTG
CCCTTATTATGGCAGTGGGCCTTGTTGTCGATTACCAGGTGCATACCCTC
TTCTACTTCTTGCACCAAGACCCAACAATCTCACGTGAGGAGCGAGCTGC
AGCAGCCCTAGTGGAGGTCGGGGCATCGGTATTTCAGGGGGGCTGCACCA
CCTTCCTGAGCATTCTTGCACTGGCTTTCTCTGGCAACCAGGTCTTTCGG
GTCTTCTTCCGCATGTTTTTTTCCATTGTTGTGCTGGCCGTAATCCATGG
ATTGGTGGTGCTCCCTGTACTGTTGACGTTCATCCCAGTCAGCGACGATG
AGCAAGTAGCCTCGCCCAAGGCGAGCACGACACCAAAGGTTGTCACTCCC
CCGCCTAATGAGAGCCAGCTGGGCGTGACCTGGAGTGAAGCCGTCCGAGA
CATGGTCTTTCCAACAGAAGAAGAAGATGTTCTTGACATGGCTGAGATGT
TTAGCAATGAGGTGCCTGAGGTAGGCGCTGACGACTGA
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