mRNA_C-australica_Contig_973.6.3 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A835YNM3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM3_9STRA) HSP 1 Score: 122 bits (307), Expect = 3.990e-28 Identity = 73/156 (46.79%), Postives = 90/156 (57.69%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGG--TPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLTSFPACLTKLT 602
MFIKKD RKI EILAD +D R++L+LGRRS EFKG L+++ + + L L LSVYD L++SI G+GLLG T + HLNLG RNQLR +P ELGL+ LETLWLDDN L FP +T+LT
Sbjct: 1 MFIKKDLRKINEILADREDSREELRLGRRSGEFKGGLRVICSPHNIPALAQLRSLSVYDNLLTSIEGVGLLGNGATALLHLNLG----------------------------------RNQLRTLPQELGLVSTLETLWLDDNLLDEFPLPVTELT 122
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: D7G880_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G880_ECTSI) HSP 1 Score: 122 bits (306), Expect = 6.100e-28 Identity = 67/158 (42.41%), Postives = 93/158 (58.86%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEF-KGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLTSFPACLTKLTELR 611
MF+KKD RKIP+ILAD DER++L LGRRS+EF +K++ + + RLQ L+KLS+YD ++S + GIG L TP++HLNLG RNQL+++P ELG + LETLW+DDN +T FP + +L L+
Sbjct: 1 MFVKKDTRKIPDILADEGDEREELHLGRRSSEFVSNGIKVVCSSRHIPRLQKLQKLSLYDNMLSHVKGIGALSATPLKHLNLG----------------------------------RNQLKSLPPELGKVGTLETLWVDDNAITDFPRSVLQLKRLQ 124
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: W4FL85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FL85_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.300e-19 Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWL 554
MF+ KD RK+PEI+AD D+R+QL+LGRRS EF G+L++L + + L+KLS+YD +SSI GIGLL TP+ L+LG +NQL ++P E+G LR L+ LWL
Sbjct: 1 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGNLRILCSPVNIPAFSRLQKLSLYDNQLSSIDGIGLLSSTPLSILDLG----------------------------------QNQLDHLPHEIGSLRHLKELWL 104
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A024TAP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAP0_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.400e-18 Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDD 560
MF+ KD RK+ EI+AD KD R+Q++LGRRS+EF+G+L++L + L KLS+YD ++SI GIGLL TP+ L+LG +N+L ++PDE+G LR L+ LWL +
Sbjct: 1 MFVVKDLRKVAEIVADPKDAREQMRLGRRSSEFQGNLRILCTPANIPAFSRLTKLSLYDNQLTSIEGIGLLESTPLSILDLG----------------------------------QNRLEHLPDEIGCLRHLKELWLSN 106
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: W4FJA0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJA0_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.580e-18 Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPD-------ELGLLRKLETLWLDDNQLTSFP 581
MF+ KD RK+PEI+AD D+R+QL+LGRRS EF G+L++L + + L+KLS+YD +SSI GIGLL TP+ L+LG + L+ H ++ QP N P ++G LR L+ LWL +N LTS P
Sbjct: 1 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGNLRILCSPVNIPAFSRLQKLSLYDNQLSSIDGIGLLSSTPLSILDLG------QNQLDHLPH----------EVHSMQPRIGNSCNLTPILVLGRIVQIGSLRHLKELWLSNNWLTSVP 138
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A3R7BQF1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BQF1_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.290e-17 Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPD-------ELGLLRKLETLWLDDNQLTSFP 581
MF+ KD RK+PEI+AD D+R+QL+LGRRS EF G+L++L + + L+KLS+YD ++SI GIGLL TP+ L+LG + L+ H ++ QP N P ++G LR L+ LWL +N LTS P
Sbjct: 358 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGNLRILCSPVNIPAFSRLQKLSLYDNQLTSIDGIGLLSSTPLSILDLG------QNQLDHLPH----------EVHSMQPRIGNSCNLTPILVLGRIVQIGSLRHLKELWLSNNWLTSVP 495
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A7S2LF17_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LF17_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.140e-14 Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILAD---------GKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGG-TPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRK-LETLWLDDNQLT-SFPACLTKLTELREVRLPG 629
MF+KKD RKIPEIL+ D +L+L RR EF G+L +L + NL KLS+YDC + ++ GIG+LG + ++ LNLG RN ++ +P E LL + L+ LWLDD ++ + P C+ +L L+ +R+PG
Sbjct: 1 MFVKKDLRKIPEILSSCDRSTEDDLTDDPLTELKLARRQGEFHGTLNVLCDTQYTNHFSNLTKLSLYDCGLVNLKGIGMLGEHSRLEELNLG----------------------------------RNMIKELPPEFALLAESLKVLWLDDCEIEGTMPECIYQLINLQTLRMPG 141
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A7S2RIN2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIN2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.670e-11 Identity = 55/147 (37.41%), Postives = 70/147 (47.62%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGS--LKLLANEGAVARLQ-NLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLT 572
MF+KKD RKI EIL D +DER L L RR NEF +L V L NLE +S+Y+C +SS+ GIG +L S L + D GRN L ++PDEL LR L++L +DN T
Sbjct: 1 MFVKKDSRKIKEILQDPEDERTSLYLSRRKNEFPNGQIANILTRPAQVEALAPNLEHMSLYNCGLSSLRGIG--------NLEPCSKLITLD-------------------------IGRNNLYDLPDELSQLRSLQSLIAEDNHFT 114
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A7S3V8F1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8F1_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.000e-11 Identity = 62/185 (33.51%), Postives = 86/185 (46.49%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQ---------LQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSL-------------LFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRK-LETLWLDDNQLTS-FPACLTKLTELREVRL 623
MFIKKD RKIP I AD E K+ L+L RR EF L +L L++L LS+YDC IS++ GIG +G + AD+ N S L + G+N + +IP +LGLL+ L LWLDD Q+ P C+ +LT+L+ +R+
Sbjct: 1 MFIKKDLRKIPLIFADAAREAKEKADAPPMTELRLARRPAEFASCLTVLCQPHYAPTLKHLVSLSLYDCEISNLDGIGFFASAMEDGKKIGDXXXXXXXXXXXXXXVTMADNNRNS-------GSICCPNLAELN-LGKNPITSIPSDLGLLKNSLTHLWLDDCQIQGQLPPCIYELTKLKTLRI 177
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A5A8DB09_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DB09_CAFRO) HSP 1 Score: 75.5 bits (184), Expect = 2.150e-11 Identity = 54/157 (34.39%), Postives = 73/157 (46.50%), Query Frame = 3
Query: 141 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGG-TPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLTSFPACLTKLTEL 608
MFIK+D RK+PEIL D D RK+L+LGRR EF GS ++L ARL NLE LS+Y ++ + L T + LNLG+ SA +P +G L L LW++DN L P + +L +L
Sbjct: 1 MFIKRDTRKVPEILVDEDDSRKELKLGRREAEFGGSTEMLLRPANAARLANLEYLSLYHNKLARLDHFETLCDCTALTGLNLGNNAISA----------------------------------LPAAIGDLASLRRLWVEDNCLGELPDEVCRLEKL 123 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_973.6.3 >prot_C-australica_Contig_973.6.3 ID=prot_C-australica_Contig_973.6.3|Name=mRNA_C-australica_Contig_973.6.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=356bp MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQback to top mRNA from alignment at C-australica_Contig_973:11515..13716+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_973.6.3 ID=mRNA_C-australica_Contig_973.6.3|Name=mRNA_C-australica_Contig_973.6.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2202bp|location=Sequence derived from alignment at C-australica_Contig_973:11515..13716+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_973:11515..13716+ >mRNA_C-australica_Contig_973.6.3 ID=mRNA_C-australica_Contig_973.6.3|Name=mRNA_C-australica_Contig_973.6.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1068bp|location=Sequence derived from alignment at C-australica_Contig_973:11515..13716+ (Chrysoparadoxa australica CS_1217)back to top |