prot_C-australica_Contig_973.6.3 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-australica_Contig_973.6.3
Unique Name	prot_C-australica_Contig_973.6.3
Type	polypeptide
Organism	Chrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length	356

Homology

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A835YNM3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.090e-28
Identity = 73/156 (46.79%), Postives = 90/156 (57.69%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGG--TPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLTSFPACLTKLT 154
            MFIKKD RKI EILAD +D R++L+LGRRS EFKG L+++ +   +  L  L  LSVYD L++SI G+GLLG   T + HLNLG                                  RNQLR +P ELGL+  LETLWLDDN L  FP  +T+LT
Sbjct:    1 MFIKKDLRKINEILADREDSREELRLGRRSGEFKGGLRVICSPHNIPALAQLRSLSVYDNLLTSIEGVGLLGNGATALLHLNLG----------------------------------RNQLRTLPQELGLVSTLETLWLDDNLLDEFPLPVTELT 122

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: D7G880_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G880_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.210e-28
Identity = 67/158 (42.41%), Postives = 93/158 (58.86%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEF-KGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLTSFPACLTKLTELR 157
            MF+KKD RKIP+ILAD  DER++L LGRRS+EF    +K++ +   + RLQ L+KLS+YD ++S + GIG L  TP++HLNLG                                  RNQL+++P ELG +  LETLW+DDN +T FP  + +L  L+
Sbjct:    1 MFVKKDTRKIPDILADEGDEREELHLGRRSSEFVSNGIKVVCSSRHIPRLQKLQKLSLYDNMLSHVKGIGALSATPLKHLNLG----------------------------------RNQLKSLPPELGKVGTLETLWVDDNAITDFPRSVLQLKRLQ 124

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: W4FL85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FL85_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.840e-19
Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWL 138
            MF+ KD RK+PEI+AD  D+R+QL+LGRRS EF G+L++L +   +     L+KLS+YD  +SSI GIGLL  TP+  L+LG                                  +NQL ++P E+G LR L+ LWL
Sbjct:    1 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGNLRILCSPVNIPAFSRLQKLSLYDNQLSSIDGIGLLSSTPLSILDLG----------------------------------QNQLDHLPHEIGSLRHLKELWL 104

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A024TAP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAP0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.120e-18
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDD 140
            MF+ KD RK+ EI+AD KD R+Q++LGRRS+EF+G+L++L     +     L KLS+YD  ++SI GIGLL  TP+  L+LG                                  +N+L ++PDE+G LR L+ LWL +
Sbjct:    1 MFVVKDLRKVAEIVADPKDAREQMRLGRRSSEFQGNLRILCTPANIPAFSRLTKLSLYDNQLTSIEGIGLLESTPLSILDLG----------------------------------QNRLEHLPDEIGCLRHLKELWLSN 106

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: W4FJA0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJA0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.250e-18
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPD-------ELGLLRKLETLWLDDNQLTSFP 147
            MF+ KD RK+PEI+AD  D+R+QL+LGRRS EF G+L++L +   +     L+KLS+YD  +SSI GIGLL  TP+  L+LG       + L+   H          ++   QP   N     P        ++G LR L+ LWL +N LTS P
Sbjct:    1 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGNLRILCSPVNIPAFSRLQKLSLYDNQLSSIDGIGLLSSTPLSILDLG------QNQLDHLPH----------EVHSMQPRIGNSCNLTPILVLGRIVQIGSLRHLKELWLSNNWLTSVP 138

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A3R7BQF1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BQF1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.630e-17
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPD-------ELGLLRKLETLWLDDNQLTSFP 147
            MF+ KD RK+PEI+AD  D+R+QL+LGRRS EF G+L++L +   +     L+KLS+YD  ++SI GIGLL  TP+  L+LG       + L+   H          ++   QP   N     P        ++G LR L+ LWL +N LTS P
Sbjct:  358 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGNLRILCSPVNIPAFSRLQKLSLYDNQLTSIDGIGLLSSTPLSILDLG------QNQLDHLPH----------EVHSMQPRIGNSCNLTPILVLGRIVQIGSLRHLKELWLSNNWLTSVP 495

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A7S2LF17_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LF17_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-14
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILAD---------GKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGG-TPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRK-LETLWLDDNQLT-SFPACLTKLTELREVRLPG 163
            MF+KKD RKIPEIL+            D   +L+L RR  EF G+L +L +        NL KLS+YDC + ++ GIG+LG  + ++ LNLG                                  RN ++ +P E  LL + L+ LWLDD ++  + P C+ +L  L+ +R+PG
Sbjct:    1 MFVKKDLRKIPEILSSCDRSTEDDLTDDPLTELKLARRQGEFHGTLNVLCDTQYTNHFSNLTKLSLYDCGLVNLKGIGMLGEHSRLEELNLG----------------------------------RNMIKELPPEFALLAESLKVLWLDDCEIEGTMPECIYQLINLQTLRMPG 141

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A7S2RIN2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIN2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.880e-11
Identity = 55/147 (37.41%), Postives = 70/147 (47.62%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGS--LKLLANEGAVARLQ-NLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLT 144
            MF+KKD RKI EIL D +DER  L L RR NEF       +L     V  L  NLE +S+Y+C +SS+ GIG        +L   S L + D                          GRN L ++PDEL  LR L++L  +DN  T
Sbjct:    1 MFVKKDSRKIKEILQDPEDERTSLYLSRRKNEFPNGQIANILTRPAQVEALAPNLEHMSLYNCGLSSLRGIG--------NLEPCSKLITLD-------------------------IGRNNLYDLPDELSQLRSLQSLIAEDNHFT 114

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A7S3V8F1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8F1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.110e-11
Identity = 62/185 (33.51%), Postives = 86/185 (46.49%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQ---------LQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSL-------------LFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRK-LETLWLDDNQLTS-FPACLTKLTELREVRL 161
            MFIKKD RKIP I AD   E K+         L+L RR  EF   L +L        L++L  LS+YDC IS++ GIG           +G               +  AD+  N         S     L +    G+N + +IP +LGLL+  L  LWLDD Q+    P C+ +LT+L+ +R+
Sbjct:    1 MFIKKDLRKIPLIFADAAREAKEKADAPPMTELRLARRPAEFASCLTVLCQPHYAPTLKHLVSLSLYDCEISNLDGIGFFASAMEDGKKIGDXXXXXXXXXXXXXXVTMADNNRNS-------GSICCPNLAELN-LGKNPITSIPSDLGLLKNSLTHLWLDDCQIQGQLPPCIYELTKLKTLRI 177

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BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Match: A0A5A8DB09_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DB09_CAFRO)

HSP 1 Score: 74.7 bits (182), Expect = 2.330e-11
Identity = 54/157 (34.39%), Postives = 73/157 (46.50%), Query Frame = 0

Query:    1 MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQNLEKLSVYDCLISSISGIGLLGG-TPMQHLNLGSLLFSADSALNPPQHRSIPTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLTSFPACLTKLTEL 156
            MFIK+D RK+PEIL D  D RK+L+LGRR  EF GS ++L      ARL NLE LS+Y   ++ +     L   T +  LNLG+   SA                                  +P  +G L  L  LW++DN L   P  + +L +L
Sbjct:    1 MFIKRDTRKVPEILVDEDDSRKELKLGRREAEFGGSTEMLLRPANAARLANLEYLSLYHNKLARLDHFETLCDCTALTGLNLGNNAISA----------------------------------LPAAIGDLASLRRLWVEDNCLGELPDEVCRLEKL 123

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot

BLAST of mRNA_C-australica_Contig_973.6.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
A0A835YNM3_9STRA	2.090e-28	46.79	Leucine rich repeat protein n=1 Tax=Tribonema minu...	[more]
D7G880_ECTSI	3.210e-28	42.41	Hypothetical leucine rich repeat protein n=2 Tax=E...	[more]
W4FL85_9STRA	1.840e-19	40.58	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A024TAP0_9STRA	1.120e-18	38.57	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
W4FJA0_9STRA	1.250e-18	40.26	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]
A0A3R7BQF1_9STRA	1.630e-17	39.61	Uncharacterized protein n=4 Tax=Aphanomyces astaci...	[more]
A0A7S2LF17_9STRA	1.080e-14	33.14	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7S2RIN2_9STRA	1.880e-11	37.41	Hypothetical protein n=1 Tax=labyrinthulid quahog ...	[more]
A0A7S3V8F1_9STRA	2.110e-11	33.51	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A5A8DB09_CAFRO	2.330e-11	34.39	Uncharacterized protein n=3 Tax=Cafeteria roenberg...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 268..291 e-value: 4.8 score: 15.9 coord: 199..221 e-value: 6.2 score: 15.0 coord: 222..245 e-value: 17.0 score: 11.4 coord: 130..152 e-value: 5.4 score: 15.5 coord: 176..197 e-value: 14.0 score: 12.0 coord: 49..73 e-value: 110.0 score: 4.8 coord: 153..175 e-value: 23.0 score: 10.2
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 22..337 e-value: 1.0E-45 score: 157.6
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 178..235 e-value: 3.4E-9 score: 36.3
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 132..154 score: 7.773561
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..355
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..355
None	No IPR available	PANTHER	PTHR16083:SF32	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28	coord: 118..238 coord: 154..349 coord: 118..191
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 118..238 coord: 118..191
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 154..349
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 46..288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-australica_Contig_973	contig	C-australica_Contig_973:11655..13635 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Chrysoparadoxa australica CS_1217 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_973.6.3	mRNA_C-australica_Contig_973.6.3	Chrysoparadoxa australica CS_1217	mRNA	C-australica_Contig_973 11515..13716 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-australica_Contig_973.6.3 ID=prot_C-australica_Contig_973.6.3|Name=mRNA_C-australica_Contig_973.6.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=356bp
MFIKKDGRKIPEILADGKDERKQLQLGRRSNEFKGSLKLLANEGAVARLQ
NLEKLSVYDCLISSISGIGLLGGTPMQHLNLGSLLFSADSALNPPQHRSI
PTSTAASKLPQPQPTGRNQLRNIPDELGLLRKLETLWLDDNQLTSFPACL
TKLTELREVRLPGNRISSLPADMSQLDKLQILDLGNNQLEEVGATLGTLS
ALQVLILRQNDISVLPEALSKLKRLKMLAVSTNKLRALTPALGEMECMEE
LYANSNTIIVVPKELAALKALRKVNLSANDIKELPKELRQAWQVKVQGEK
LVLRSGFSLTGNPIAKPKLKTKSRKPAKMLGAVEESHLMEESEEVDAEKE
KEGEK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt