mRNA_C-australica_Contig_10129.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10129.1.1
Unique NamemRNA_C-australica_Contig_10129.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A222E361_9RHOB (HTH-type transcriptional repressor RspR n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E361_9RHOB)

HSP 1 Score: 132 bits (331), Expect = 6.570e-37
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSEND 216
            EK KV RLCTLG SKEDRMPQLVEDHREIATAVKDHD DRAVAAGMLHLSRLDDTIERISATNSTYFDSEND
Sbjct:  159 EKIKVDRLCTLGLSKEDRMPQLVEDHREIATAVKDHDADRAVAAGMLHLSRLDDTIERISATNSTYFDSEND 230          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A848W284_9RHOB (GntR family transcriptional regulator n=1 Tax=Silicimonas sp. TaxID=2058390 RepID=A0A848W284_9RHOB)

HSP 1 Score: 106 bits (265), Expect = 5.560e-27
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204
            EK KV RLC LG SKEDRMP+LVEDHR IA AVK HDP+RAV AGMLHLSRLD+TIERI ATN++YF+
Sbjct:  159 EKSKVDRLCMLGLSKEDRMPELVEDHRAIAAAVKAHDPERAVDAGMLHLSRLDETIERIGATNASYFE 226          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2C9CVF9_9RHOB (DNA-binding transcriptional regulator, GntR family n=1 Tax=Monaibacterium marinum TaxID=1690039 RepID=A0A2C9CVF9_9RHOB)

HSP 1 Score: 104 bits (259), Expect = 4.400e-26
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204
            EK KV RLC LG SKEDRMP+LVEDHR IA A+K HD DRA+ AGMLHLSRLDDTI RISATN+ YF+
Sbjct:  159 EKSKVDRLCVLGLSKEDRMPELVEDHRVIADALKAHDADRAIEAGMLHLSRLDDTIRRISATNANYFE 226          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2D8WYI8_PARSX (GntR family transcriptional regulator n=1 Tax=Paracoccus sp. TaxID=267 RepID=A0A2D8WYI8_PARSX)

HSP 1 Score: 100 bits (250), Expect = 9.770e-25
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSE 210
            EK KV RLCTLG SKEDRMP LV DHR IA AVK+HD ++AV  G+LHLSRLDDTI RISATN+ YF+ E
Sbjct:  159 EKSKVDRLCTLGLSKEDRMPHLVADHRGIAEAVKNHDAEKAVEIGVLHLSRLDDTIARISATNANYFEPE 228          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2M8J4S7_9RHOB (GntR family transcriptional regulator n=1 Tax=Pseudooceanicola lipolyticus TaxID=2029104 RepID=A0A2M8J4S7_9RHOB)

HSP 1 Score: 100 bits (249), Expect = 1.380e-24
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSE 210
            EK KV RLC LG +KE RMP+LVEDHR IA AVK HD +RAVAAG+LHLSRLD+TIERIS+ N+ YF+ E
Sbjct:  159 EKSKVDRLCVLGLAKESRMPELVEDHRAIAEAVKAHDAERAVAAGILHLSRLDETIERISSNNANYFEPE 228          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A6B3RRD9_9RHOB (GntR family transcriptional regulator n=2 Tax=Tabrizicola algicola TaxID=2709381 RepID=A0A6B3RRD9_9RHOB)

HSP 1 Score: 99.4 bits (246), Expect = 3.870e-24
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204
            EK KV RLC LG SKEDRMP+LVEDHR IA AVK +DP RAV  GMLHLSRLD TIERIS TN+ YF+
Sbjct:  159 EKSKVDRLCMLGLSKEDRMPELVEDHRAIAAAVKANDPARAVELGMLHLSRLDKTIERISVTNANYFE 226          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A2T0VTI5_9RHOB (DNA-binding GntR family transcriptional regulator n=1 Tax=Yoonia maritima TaxID=1435347 RepID=A0A2T0VTI5_9RHOB)

HSP 1 Score: 98.6 bits (244), Expect = 7.700e-24
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204
            EK KV RLC LG +KEDRMP+LV DH+ IA AVK HDPDRAV  GMLHLSRLD+TIE ISAT ++YF+
Sbjct:  159 EKSKVDRLCMLGLAKEDRMPELVADHKAIAEAVKKHDPDRAVEIGMLHLSRLDETIEGISATKASYFE 226          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A411YXG0_9RHOB (GntR family transcriptional regulator n=2 Tax=Tabrizicola alkalilacus TaxID=2305252 RepID=A0A411YXG0_9RHOB)

HSP 1 Score: 97.4 bits (241), Expect = 2.160e-23
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204
            EK KV RLC LG SKEDRMP+LV+DHR IA AVK +DP RAV  GMLHLSRLD TIERIS TN+ YF+
Sbjct:  159 EKAKVDRLCMLGLSKEDRMPELVQDHRAIAEAVKANDPVRAVEIGMLHLSRLDKTIERISVTNANYFE 226          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A4R6ATR9_9RHOB (GntR family transcriptional regulator n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A4R6ATR9_9RHOB)

HSP 1 Score: 97.1 bits (240), Expect = 3.040e-23
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFDSEND 216
            EK KV RLC LG SKEDRMP+LV DHR IA A+K HD + A+ AGMLHLSRLD TIERISA N++YF+   D
Sbjct:  159 EKSKVDRLCMLGLSKEDRMPELVADHRAIADAIKAHDAETAIKAGMLHLSRLDATIERISAINASYFEPSED 230          
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Match: A0A1Y5RCY6_9RHOB (Putative HTH-type transcriptional regulator YdfH n=1 Tax=Pacificibacter marinus TaxID=658057 RepID=A0A1Y5RCY6_9RHOB)

HSP 1 Score: 96.7 bits (239), Expect = 4.290e-23
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLSRLDDTIERISATNSTYFD 204
            EK KV RLC LG SKEDRMP+LV DHR IA A+KDHDP++A+  GM HLSRLD TIE ISAT ++YF+
Sbjct:  159 EKSKVDRLCMLGLSKEDRMPELVADHRAIADAIKDHDPEKAIEFGMRHLSRLDKTIESISATKASYFE 226          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E361_9RHOB6.570e-3794.44HTH-type transcriptional repressor RspR n=3 Tax=Ro... [more]
A0A848W284_9RHOB5.560e-2777.94GntR family transcriptional regulator n=1 Tax=Sili... [more]
A0A2C9CVF9_9RHOB4.400e-2676.47DNA-binding transcriptional regulator, GntR family... [more]
A0A2D8WYI8_PARSX9.770e-2572.86GntR family transcriptional regulator n=1 Tax=Para... [more]
A0A2M8J4S7_9RHOB1.380e-2471.43GntR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A6B3RRD9_9RHOB3.870e-2475.00GntR family transcriptional regulator n=2 Tax=Tabr... [more]
A0A2T0VTI5_9RHOB7.700e-2472.06DNA-binding GntR family transcriptional regulator ... [more]
A0A411YXG0_9RHOB2.160e-2373.53GntR family transcriptional regulator n=2 Tax=Tabr... [more]
A0A4R6ATR9_9RHOB3.040e-2368.06GntR family transcriptional regulator n=2 Tax=Rhod... [more]
A0A1Y5RCY6_9RHOB4.290e-2369.12Putative HTH-type transcriptional regulator YdfH n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10129contigC-australica_Contig_10129:11..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog314256.OG2516_05578
PFAMsFCD,GntR
Model size219
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.52e-23
EggNOG OGsCOG1802@1|root,COG1802@2|Bacteria,1MWG2@1224|Proteobacteria,2U3N6@28211|Alphaproteobacteria,2PFNW@252301|Oceanicola
DescriptionFCD
Cds size219
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586747.588218-CDS-C-australica_Contig_10129:10..2291682586747.588218-CDS-C-australica_Contig_10129:10..229Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10129 11..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10129.1.1prot_C-australica_Contig_10129.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10129 11..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10129.1.1

>prot_C-australica_Contig_10129.1.1 ID=prot_C-australica_Contig_10129.1.1|Name=mRNA_C-australica_Contig_10129.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=73bp
EKPKVARLCTLGGSKEDRMPQLVEDHREIATAVKDHDPDRAVAAGMLHLS
RLDDTIERISATNSTYFDSEND*
back to top

mRNA from alignment at C-australica_Contig_10129:11..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10129.1.1 ID=mRNA_C-australica_Contig_10129.1.1|Name=mRNA_C-australica_Contig_10129.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=219bp|location=Sequence derived from alignment at C-australica_Contig_10129:11..229+ (Chrysoparadoxa australica CS_1217)
GAAAAACCCAAGGTCGCCCGCCTGTGCACGCTGGGGGGCTCGAAAGAGGA CCGCATGCCGCAACTGGTCGAGGATCACCGAGAGATCGCAACAGCCGTCA AGGACCACGACCCCGACCGGGCTGTCGCGGCGGGCATGTTGCACCTGTCG CGATTGGACGACACGATTGAGCGCATCTCGGCGACCAACAGCACCTATTT CGACTCCGAAAACGACTGA
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_10129:11..229+

>mRNA_C-australica_Contig_10129.1.1 ID=mRNA_C-australica_Contig_10129.1.1|Name=mRNA_C-australica_Contig_10129.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=219bp|location=Sequence derived from alignment at C-australica_Contig_10129:11..229+ (Chrysoparadoxa australica CS_1217)
GAAAAACCCAAGGTCGCCCGCCTGTGCACGCTGGGGGGCTCGAAAGAGGA
CCGCATGCCGCAACTGGTCGAGGATCACCGAGAGATCGCAACAGCCGTCA
AGGACCACGACCCCGACCGGGCTGTCGCGGCGGGCATGTTGCACCTGTCG
CGATTGGACGACACGATTGAGCGCATCTCGGCGACCAACAGCACCTATTT
CGACTCCGAAAACGACTGA
back to top