mRNA_C-australica_Contig_1011.5.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1011.5.2
Unique NamemRNA_C-australica_Contig_1011.5.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: W7T312_9STRA (6-pyruvoyltetrahydropterin synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T312_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.860e-55
Identity = 90/132 (68.18%), Postives = 103/132 (78.03%), Query Frame = 3
Query:  168 FSLGVRDSIMIAHSFKGERFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFP-GENTTTEFMCRKIHEGIARE-CRNGESM--EGFNGEVCVKLWESHKAWACYKATV 551
            FSLG+RDSIMIAHSFKGE+FGPAQ +HGATYTVDV F S  L P+ NWV+DIG A  ALS++LS YNF+NLD++FP GENTTTEFMCR IH  +A   C N      E F G +CVKLWESHKAWACY+A V
Sbjct:   33 FSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAIV 164          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: D8LHK0_ECTSI (6-pyruvoyltetrahydropterin synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK0_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 9.520e-52
Identity = 79/129 (61.24%), Postives = 102/129 (79.07%), Query Frame = 3
Query:  165 GFSLGVRDSIMIAHSFKGERFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPGENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKATV 551
            G+SLG+RDSIMIAHSF+G +FGPAQ++HGATYTVD EF +  L  + NWVVDIGAA + L+ VLS YNF+NL+E+FPG+NTTTEFMC+ I + +A +C      + F+G +C+KLWESHKAW CY+  V
Sbjct:   32 GYSLGIRDSIMIAHSFEGPQFGPAQEMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLAAVLSKYNFKNLNEIFPGQNTTTEFMCKVIFDELAAKCG-----KDFHGTLCIKLWESHKAWGCYEGDV 155          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: A0A836CJP8_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP8_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.810e-51
Identity = 82/131 (62.60%), Postives = 100/131 (76.34%), Query Frame = 3
Query:  159 TAGFSLGVRDSIMIAHSFKGERFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPGENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKATV 551
            +A ++LG+RDSIMIAHSFKG  FGPAQ++HGATYT DVEF  P L P +NWV+DIG A + LS VL+ YNF+NL+E+FP ENTTTEFMCR+I +G+AR C        F G + VKLWESHKAWA Y+  V
Sbjct:    7 SALYTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGR-----FCGTIRVKLWESHKAWASYEGAV 132          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: A0A7S4DL62_HETAK (6-pyruvoyltetrahydropterin synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL62_HETAK)

HSP 1 Score: 176 bits (446), Expect = 1.020e-50
Identity = 88/144 (61.11%), Postives = 102/144 (70.83%), Query Frame = 3
Query:  120 LLGLLVALFFEATTAGFSLGVRDSIMIAHSFKGERFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPGENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKATV 551
            L  L++A F     A FSLGVRDSIMIAHSFKGE FGPAQ++HGATYTVDVEF +  L  + NWVVDIG A + LS VL  YNF+NL+ELFP +NTTTEFMC+ I + IA        +E F G +CVKL ESHKAWA Y   V
Sbjct:   13 LAALVLAFFASLAHAKFSLGVRDSIMIAHSFKGEEFGPAQQMHGATYTVDVEFEAEELVDKCNWVVDIGEASEILSNVLRKYNFKNLNELFPDDNTTTEFMCKAIFDDIAA------CLENFKGSMCVKLHESHKAWASYTGDV 150          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: A0A7S2V5M2_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5M2_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.280e-50
Identity = 85/143 (59.44%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  120 LLGLLVALFFEATT--AGFSLGVRDSIMIAHSFKGERFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPGENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYK 542
            ++G+L  +F  A     G++LGV+DSIMIAHSF+GE FGPAQKLHGATYTVDVEF +  LE + NWV+DIG A + L KVL+ YNF+NLDELFP +NTTTEFMC+ I + ++ E  N      F G + VKLWESHKAWA Y+
Sbjct:   12 IIGILCIMFTLAYAHKKGYTLGVKDSIMIAHSFQGEEFGPAQKLHGATYTVDVEFMADVLESKCNWVIDIGLASEILGKVLAKYNFKNLDELFPDDNTTTEFMCKVIFDDMSAELANK-----FKGSLSVKLWESHKAWASYQ 149          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: L1J9Q7_GUITC (6-pyruvoyltetrahydropterin synthase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1J9Q7_GUITC)

HSP 1 Score: 169 bits (428), Expect = 1.710e-47
Identity = 79/124 (63.71%), Postives = 91/124 (73.39%), Query Frame = 3
Query:  168 FSLGVRDSIMIAHSFKGERFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPGENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACY 539
            +SLG+RDSIMIAHSF G+ FGPAQ +HGATYTVDVEF    L P +NWV+DIG     L KVL  YNF+NL+ELFPGENTTTEFMC+KI EG+  E +       F G + VKLWESH AWA Y
Sbjct:   63 YSLGLRDSIMIAHSFTGKEFGPAQNMHGATYTVDVEFHVESLAPRLNWVLDIGEGMTMLKKVLGEYNFKNLNELFPGENTTTEFMCKKIFEGLCVELKGK-----FKGSITVKLWESHSAWASY 181          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: A0A7S2A892_TRICV (6-pyruvoyltetrahydropterin synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A892_TRICV)

HSP 1 Score: 163 bits (413), Expect = 2.480e-45
Identity = 86/146 (58.90%), Postives = 98/146 (67.12%), Query Frame = 3
Query:  120 LLGLLVALFFEATTAGFSLGVRDSIMIAHSFKGE-RFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFP-GENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKATV 551
            LL LL+     A    F+LGVRDS+MIAHSF G   FGPA  +HGATYT DVEF +  L PE NWV+DIG A D L+ VLS YN +NLDE+FP GE TTTEFMCR IHE + R  +  E    F GE+ VKLWESHKAW  Y   V
Sbjct:   42 LLPLLLPAAVGADRLPFALGVRDSLMIAHSFHGHPSFGPAGGMHGATYTCDVEFRTSHLHPECNWVIDIGLASDVLTSVLSRYNMKNLDEVFPDGEMTTTEFMCRVIHEDLCRRLK--EEGAEFEGEIRVKLWESHKAWGSYVGEV 185          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: A0A7S0FMK9_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMK9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 5.410e-45
Identity = 89/150 (59.33%), Postives = 103/150 (68.67%), Query Frame = 3
Query:  129 LLVAL--FFEATTAG-----FSLGVRDSIMIAHSFKGE-RFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPG-ENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKATV 551
            LLVAL  F  A+ A      F+LGVRDS+MIAHSF     FGPA  +HGATYT DVEFSS  L    NWV+DIG A D L+ VLS YN +NLDE+FPG E TTTEFMC+ IH+GIA+  R  E +  F GE+ VKLWESHKAWA +   V
Sbjct:    8 LLVALLAFASASIAAAERLPFTLGVRDSLMIAHSFHNHPSFGPAGGMHGATYTCDVEFSSANLVEGTNWVIDIGKASDILADVLSRYNLKNLDEVFPGGEMTTTEFMCKTIHDGIAQRIR--EDVGDFKGEIRVKLWESHKAWASFVGEV 155          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: A0A7S0WCE1_9CRYP (6-pyruvoyltetrahydropterin synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WCE1_9CRYP)

HSP 1 Score: 162 bits (410), Expect = 7.560e-45
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 3
Query:  165 GFSLGVRDSIMIAHSFKGERFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPGENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKATV 551
            G++LGVRDSIMIAHSFKG  FGPAQ +HGATYTVD+E S   L  ++NWVVDIG     L +VL  YN++NLDE+FPG NTTTEFM +KIHEG+A   +      G  G + VKLWESH AWA Y   +
Sbjct:   64 GYTLGVRDSIMIAHSFKGPEFGPAQGMHGATYTVDLEVSVEKLADKLNWVVDIGVLLGILKEVLGVYNYKNLDEVFPGVNTTTEFMSQKIHEGVAAALKK----HGVVGSMSVKLWESHNAWATYSNKI 188          
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Match: A0A7S2R056_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R056_9STRA)

HSP 1 Score: 158 bits (399), Expect = 6.480e-44
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  168 FSLGVRDSIMIAHSFKGE-RFGPAQKLHGATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPGEN-TTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKATV 551
            F+LGVRDSIMIAHSF     FGPA  +HGATYT DVEF+   L+ + NWV+DIG A D LS++L+ YN +NLDE+F  +  TTTEFMCR+I +GIA + R  E +  F+G++CVKLWESHKAWA Y+ ++
Sbjct:    9 FTLGVRDSIMIAHSFHNHPSFGPAGGMHGATYTCDVEFACEELDSDANWVIDIGKASDILSEILAKYNLKNLDEIFGDDILTTTEFMCREICQGIAEKVR--EQVPDFHGDLCVKLWESHKAWASYQQSI 136          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1011.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T312_9STRA1.860e-5568.186-pyruvoyltetrahydropterin synthase n=3 Tax=Monodo... [more]
D8LHK0_ECTSI9.520e-5261.246-pyruvoyltetrahydropterin synthase n=2 Tax=Ectoca... [more]
A0A836CJP8_9STRA1.810e-5162.606-pyruvoyltetrahydropterin synthase n=1 Tax=Tribon... [more]
A0A7S4DL62_HETAK1.020e-5061.116-pyruvoyltetrahydropterin synthase n=1 Tax=Hetero... [more]
A0A7S2V5M2_9STRA4.280e-5059.446-pyruvoyltetrahydropterin synthase n=1 Tax=Fibroc... [more]
L1J9Q7_GUITC1.710e-4763.716-pyruvoyltetrahydropterin synthase n=3 Tax=Guilla... [more]
A0A7S2A892_TRICV2.480e-4558.906-pyruvoyltetrahydropterin synthase n=1 Tax=Triere... [more]
A0A7S0FMK9_9STRA5.410e-4559.336-pyruvoyltetrahydropterin synthase n=1 Tax=Minuto... [more]
A0A7S0WCE1_9CRYP7.560e-4559.696-pyruvoyltetrahydropterin synthase n=1 Tax=Hemise... [more]
A0A7S2R056_9STRA6.480e-4458.466-pyruvoyltetrahydropterin synthase n=1 Tax=Eucamp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1011contigC-australica_Contig_1011:11412..12903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHK0
PFAMsPTPS
Model size1165
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.55e-55
EggNOG OGs2CYMG@1|root,2S557@2759|Eukaryota
Ec32 ortholog description6-pyruvoyl tetrahydropterin synthase/QueD family protein
Ec32 orthologEc-10_002190.1
Description6-pyruvoyl tetrahydropterin synthase
Cds size456
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1011.5.2prot_C-australica_Contig_1011.5.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1011 12023..12805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586747.0899003-UTR-C-australica_Contig_1011:11411..120221682586747.0899003-UTR-C-australica_Contig_1011:11411..12022Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1011 11412..12022 -
1682586747.1678116-UTR-C-australica_Contig_1011:12805..129031682586747.1678116-UTR-C-australica_Contig_1011:12805..12903Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1011 12806..12903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586747.1056128-CDS-C-australica_Contig_1011:12022..120521682586747.1056128-CDS-C-australica_Contig_1011:12022..12052Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 12023..12052 -
1682586747.124448-CDS-C-australica_Contig_1011:12241..124411682586747.124448-CDS-C-australica_Contig_1011:12241..12441Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 12242..12441 -
1682586747.1350322-CDS-C-australica_Contig_1011:12521..126031682586747.1350322-CDS-C-australica_Contig_1011:12521..12603Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 12522..12603 -
1682586747.155597-CDS-C-australica_Contig_1011:12661..128051682586747.155597-CDS-C-australica_Contig_1011:12661..12805Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1011 12662..12805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1011.5.2

>prot_C-australica_Contig_1011.5.2 ID=prot_C-australica_Contig_1011.5.2|Name=mRNA_C-australica_Contig_1011.5.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=152bp
MKGPHQLLLGLLVALFFEATTAGFSLGVRDSIMIAHSFKGERFGPAQKLH
GATYTVDVEFSSPGLEPEVNWVVDIGAAGDALSKVLSAYNFENLDELFPG
ENTTTEFMCRKIHEGIARECRNGESMEGFNGEVCVKLWESHKAWACYKAT
V*
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mRNA from alignment at C-australica_Contig_1011:11412..12903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1011.5.2 ID=mRNA_C-australica_Contig_1011.5.2|Name=mRNA_C-australica_Contig_1011.5.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1492bp|location=Sequence derived from alignment at C-australica_Contig_1011:11412..12903- (Chrysoparadoxa australica CS_1217)
TCCCTTTCCTTCGCCGTATCCTACTTCTTTTCTGGTCAAGGTGGTGGAGG CTGCTCTCTATTTCCTGTTGCCATCTTTTCCGTGCTACACAACTCATCAT GAAGGGCCCCCACCAGTTGCTGTTAGGCCTCTTGGTGGCACTCTTCTTTG AGGCTACCACAGCGGGATTCTCCCTTGGTGTACGAGATTCCATCATGATT GCCCACAGCTTTAAGGGGGAGCGCTTTGGCCCTGCACAAAAGGTATGGAT ACTGGTTCTCCTTTTTTGCGTGGCGTTTCACCCCTCTCCCGGCCTTCCAG CTACATGGAGCAACCTACACTGTCGATGTCGAGTTCTCCTCACCGGGTCT AGAACCAGAGGTCAACTGGGTTGTTGATATAGGTGCTCCAACTTGGGCCT GCATGGTGCAAACTCGGCACTTCTGCATGGCTTACACAAGACTTACATCT ATTTGCCTGCAGGAGCTGCTGGGGATGCGCTAAGCAAAGTTTTGTCTGCG TACAATTTTGAGAACTTGGATGAGCTGTTTCCTGGTGAGAACACCACCAC TGAGTTCATGTGCAGAAAGATCCATGAGGGTATTGCCAGGGAGTGCCGTA ACGGTGAGAGCATGGAAGGATTTAACGGAGAGGTTTGTGTCAAGCTTTGG GAAAGCCACAAGGTAGGTTAAAGCAGCTCATAACGTGCTATACTGCGTAT GTACGCTGTCTACTCCACTGCCTGTTACTTGGAGGGCGAGGTCATGCTTT TGTTTTATCTCGAGGCAAGCGCTGCAACCGGGCAACTGAGGGATGGGACC AAGCTGTGCTATTCCTGCTGTTCCTTACTACTCTAACTCTTTGCTGGGCA GGCGTGGGCATGCTACAAAGCCACTGTTTAAGGCACGTGAGCAGCAGCTC CCAGGGGTTAACAGGGTAACAGAGCAGGTGCCAATAACGTTGCCCCTCTC TCTAAAACCCTTGTGATGAAGCCCCTGCCAAGCTCGGAAAGGCTACTGAT TAGTGCAGGGCATAATTAGAAGGCATGCCACGTGCAGGAACAGATTATGG CCAGCAATGGCTTAGGGAAGTTCCCTATCCATACCCTTGGGATGAGTGGT CCTGCCCTGCTTGGGTAGCCAGGGAGTAGCTTCCTCGTTATTTTCAGTAT GCGGAAGATTCAAAGCAATTCACCTCTAAAATGAACGGGGTCCATGCAAA TAAATGGGCACCCATGTGACTGCTGGTAGATGGAAAGAAAAATGAAACGT TTTGCATTGATCCTGGTACCGGAAGCCCAGTGAGAAGAAGAGGGAACACA ATGGGCAGCACAGAGATTCTCCTTCCACTGCGGTGGGTTGACAAAATGAT GGGCTTGTCTATTCACTTATGCTTGGAGTTGATGACTTGTCAGGCTATTC CGGCCCTTCCATCCTGAGAGATGGAGCAAGGAGCTGGTTTTGAGAGATAA GCGAGTCAGTTGGAACAAGAGCAAAAAAGCTAGAATCTGTCA
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Coding sequence (CDS) from alignment at C-australica_Contig_1011:11412..12903-

>mRNA_C-australica_Contig_1011.5.2 ID=mRNA_C-australica_Contig_1011.5.2|Name=mRNA_C-australica_Contig_1011.5.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=456bp|location=Sequence derived from alignment at C-australica_Contig_1011:11412..12903- (Chrysoparadoxa australica CS_1217)
ATGAAGGGCCCCCACCAGTTGCTGTTAGGCCTCTTGGTGGCACTCTTCTT
TGAGGCTACCACAGCGGGATTCTCCCTTGGTGTACGAGATTCCATCATGA
TTGCCCACAGCTTTAAGGGGGAGCGCTTTGGCCCTGCACAAAAGCTACAT
GGAGCAACCTACACTGTCGATGTCGAGTTCTCCTCACCGGGTCTAGAACC
AGAGGTCAACTGGGTTGTTGATATAGGAGCTGCTGGGGATGCGCTAAGCA
AAGTTTTGTCTGCGTACAATTTTGAGAACTTGGATGAGCTGTTTCCTGGT
GAGAACACCACCACTGAGTTCATGTGCAGAAAGATCCATGAGGGTATTGC
CAGGGAGTGCCGTAACGGTGAGAGCATGGAAGGATTTAACGGAGAGGTTT
GTGTCAAGCTTTGGGAAAGCCACAAGGCGTGGGCATGCTACAAAGCCACT
GTTTAA
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