mRNA_C-australica_Contig_10101.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10101.1.1
Unique NamemRNA_C-australica_Contig_10101.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A4V2Q3X3_9RHOB (Uncharacterized protein YdeI (YjbR/CyaY-like superfamily) n=2 Tax=Shimia isoporae TaxID=647720 RepID=A0A4V2Q3X3_9RHOB)

HSP 1 Score: 110 bits (274), Expect = 1.820e-28
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    7 MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267
            MDA+  DR+EIT++  LW WLE NA+ R  LWLVTYKR QG  +V+ + V DAL+A+GW+DG+R+ LD ARTMQ+I P +Q  WA S
Sbjct:    1 MDADKFDRVEITNSQMLWDWLEANASRRSSLWLVTYKRHQGAAYVSRDEVLDALVAFGWIDGRRMALDDARTMQLIGPRKQNAWAES 87          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A0M6YLM2_9RHOB (Uncharacterized protein n=2 Tax=Jannaschia donghaensis TaxID=420998 RepID=A0A0M6YLM2_9RHOB)

HSP 1 Score: 98.2 bits (243), Expect = 1.030e-23
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   10 DAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267
            DA+ ++R+EI    ALWAWLE +     G+WLVT+K      +++ +AV DALIAYGW+DG+R+ LDA RTMQ+IAP +Q+ WAA+
Sbjct:   11 DADSVERVEIASEPALWAWLEAHYERDRGVWLVTWKAAHRDRYLSRDAVLDALIAYGWIDGRRMKLDADRTMQLIAPRKQQAWAAT 96          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A1H8JL10_9RHOB (Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family n=1 Tax=Loktanella fryxellensis TaxID=245187 RepID=A0A1H8JL10_9RHOB)

HSP 1 Score: 87.8 bits (216), Expect = 9.560e-20
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    7 MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWA 261
            MD E   R+E+  +  +W+WL+ N A  + +WLVT+K      +V  + V DALIAYGW+DG+R+ LD  RTMQ+I+P +Q+ WA
Sbjct:    1 MDHEKFARVEVRSSAEVWSWLDVNHAMLESVWLVTWKASHRDRYVGRDDVLDALIAYGWIDGRRLKLDEDRTMQLISPRKQQAWA 85          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A3V6W6_9RHOB (Uncharacterized protein n=2 Tax=Yoonia vestfoldensis TaxID=245188 RepID=A3V6W6_9RHOB)

HSP 1 Score: 87.4 bits (215), Expect = 1.470e-19
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 DIMDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267
            + MD E   ++EIT+A  LW W   N A  + +WLVT+K      +   + V DALIAYGW+DG+R+ LD  RTMQ+++  +Q+ WAAS
Sbjct:    4 EAMDQEKFAKVEITNADELWEWFAKNHAQDESIWLVTWKAVNRDKYTTRDQVLDALIAYGWIDGRRLKLDDDRTMQLLSKRKQQAWAAS 92          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: UPI001BC4E7F3 (YdeI/OmpD-associated family protein n=2 Tax=unclassified Jannaschia TaxID=2645469 RepID=UPI001BC4E7F3)

HSP 1 Score: 86.3 bits (212), Expect = 3.400e-19
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   22 IDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWA 261
            +DR+E+T   ALWAWL  +    DG+ LVT+K      +++ +AV DALIA+GW+DG+R  LDA RTMQ+I+P +++ WA
Sbjct:    4 MDRIEVTSEAALWAWLGAHHGRADGVLLVTWKATHRDKYLSRDAVLDALIAHGWIDGRRYKLDADRTMQLISPRREQTWA 83          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A0Q2XTK9_9RHOB (Uncharacterized protein n=2 Tax=Loktanella sp. 3ANDIMAR09 TaxID=1225657 RepID=A0A0Q2XTK9_9RHOB)

HSP 1 Score: 84.0 bits (206), Expect = 2.870e-18
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIW 258
            MD +   ++ I D  ALW WL  + A  D +WLVT+KR  GP  V+ +AV DAL+A+GW+DG+R+  D  RTMQ+I+P  Q+ W
Sbjct:    1 MDPDRFAQVMIDDDAALWDWLHQHHAQSDSVWLVTWKRGAGPT-VSRDAVLDALLAHGWIDGRRMARDDGRTMQLISPRSQQRW 83          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: W8S1I1_9RHOB (Uncharacterized protein n=1 Tax=Roseibacterium elongatum DSM 19469 TaxID=1294273 RepID=W8S1I1_9RHOB)

HSP 1 Score: 84.0 bits (206), Expect = 2.930e-18
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   13 AEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267
            A  ++R+EIT    LW WL  N      +WLVT+K     ++V+   V DAL+AYGW+DG+R+ LD  R+MQ+IAP +Q +WA S
Sbjct:    4 APALERIEITAPSQLWEWLAENHTG-PSVWLVTWKAAHRANYVSREQVLDALVAYGWIDGRRMKLDENRSMQLIAPRKQSVWARS 87          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A0C1JFK4_9RHOB (Uncharacterized protein n=1 Tax=Ruegeria sp. ANG-S4 TaxID=1577904 RepID=A0A0C1JFK4_9RHOB)

HSP 1 Score: 82.8 bits (203), Expect = 6.770e-18
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   22 IDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267
            +D +E+  A  LWAWLE N +S D + LVT+K      +V+   V DALIAYGW+DG+R  +D  RT Q+I+P +Q+ W+ S
Sbjct:    1 MDHLEVKSAIDLWAWLERNHSSSDSILLVTWKAAHQDKYVSREEVLDALIAYGWIDGRRFAVDDNRTSQLISPRKQQAWSKS 82          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A1Y5SXS3_9RHOB (Uncharacterized protein n=1 Tax=Pseudooctadecabacter jejudonensis TaxID=1391910 RepID=A0A1Y5SXS3_9RHOB)

HSP 1 Score: 82.0 bits (201), Expect = 1.350e-17
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   22 IDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS 267
            +D +EIT   ALW WL+ NAA  D L L+T+K+     +V    V DAL+A+GW+DG+R  +D  RT Q+I+P +Q+ W+ S
Sbjct:    1 MDDLEITTPDALWDWLDKNAAQPDSLRLITWKKHHPDKYVGREDVLDALLAHGWIDGRRFVVDDDRTAQLISPRKQQAWSQS 82          
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Match: A0A2D9Q3P7_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D9Q3P7_9EURY)

HSP 1 Score: 80.9 bits (198), Expect = 4.680e-17
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   10 DAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAVRDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWA 261
            D +  +R+E++ +  LW WL       + +WLVT+K      +V+ + V DALIA+GW+DG+R+ LD  RTMQ+IAP Q++ WA
Sbjct:    3 DLDDRERVEVSSSIQLWDWLLTAHTQHESVWLVTWKAANRDKYVSRDEVLDALIAFGWIDGRRMKLDEERTMQLIAPRQEQAWA 86          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10101.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V2Q3X3_9RHOB1.820e-2857.47Uncharacterized protein YdeI (YjbR/CyaY-like super... [more]
A0A0M6YLM2_9RHOB1.030e-2352.33Uncharacterized protein n=2 Tax=Jannaschia donghae... [more]
A0A1H8JL10_9RHOB9.560e-2045.88Uncharacterized conserved protein YdeI, YjbR/CyaY-... [more]
A3V6W6_9RHOB1.470e-1944.94Uncharacterized protein n=2 Tax=Yoonia vestfoldens... [more]
UPI001BC4E7F33.400e-1948.75YdeI/OmpD-associated family protein n=2 Tax=unclas... [more]
A0A0Q2XTK9_9RHOB2.870e-1847.62Uncharacterized protein n=2 Tax=Loktanella sp. 3AN... [more]
W8S1I1_9RHOB2.930e-1845.88Uncharacterized protein n=1 Tax=Roseibacterium elo... [more]
A0A0C1JFK4_9RHOB6.770e-1846.34Uncharacterized protein n=1 Tax=Ruegeria sp. ANG-S... [more]
A0A1Y5SXS3_9RHOB1.350e-1745.12Uncharacterized protein n=1 Tax=Pseudooctadecabact... [more]
A0A2D9Q3P7_9EURY4.680e-1742.86Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10101contigC-australica_Contig_10101:1..267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog314232.SKA53_07751
PFAMsOmdA
Model size267
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.16e-20
EggNOG OGsCOG4430@1|root,COG4430@2|Bacteria,1NEN6@1224|Proteobacteria,2U849@28211|Alphaproteobacteria
DescriptionBacteriocin-protection, YdeI or OmpD-Associated
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.643394-CDS-C-australica_Contig_10101:0..2611682586746.643394-CDS-C-australica_Contig_10101:0..261Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10101 1..261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.6547964-UTR-C-australica_Contig_10101:261..2671682586746.6547964-UTR-C-australica_Contig_10101:261..267Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10101 262..267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10101.1.1prot_C-australica_Contig_10101.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10101 1..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10101.1.1

>prot_C-australica_Contig_10101.1.1 ID=prot_C-australica_Contig_10101.1.1|Name=mRNA_C-australica_Contig_10101.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=87bp
MDAEIIDRMEITDAGALWAWLENNAASRDGLWLVTYKREQGPHHVAPNAV
RDALIAYGWVDGKRVTLDAARTMQMIAPWQQKIWAAS
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mRNA from alignment at C-australica_Contig_10101:1..267-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10101.1.1 ID=mRNA_C-australica_Contig_10101.1.1|Name=mRNA_C-australica_Contig_10101.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=267bp|location=Sequence derived from alignment at C-australica_Contig_10101:1..267- (Chrysoparadoxa australica CS_1217)
GACATTATGGATGCGGAAATTATTGACCGGATGGAAATCACAGATGCGGG TGCATTATGGGCCTGGCTGGAAAACAACGCGGCGAGCCGGGACGGCTTGT GGTTGGTCACTTACAAGAGAGAACAGGGGCCACACCATGTGGCCCCGAAT GCGGTGCGGGATGCGCTGATTGCCTATGGCTGGGTTGATGGAAAGCGGGT GACGTTGGACGCCGCGCGGACGATGCAGATGATCGCGCCGTGGCAGCAAA AGATTTGGGCTGCGAGT
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Coding sequence (CDS) from alignment at C-australica_Contig_10101:1..267-

>mRNA_C-australica_Contig_10101.1.1 ID=mRNA_C-australica_Contig_10101.1.1|Name=mRNA_C-australica_Contig_10101.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=261bp|location=Sequence derived from alignment at C-australica_Contig_10101:1..267- (Chrysoparadoxa australica CS_1217)
ATGGATGCGGAAATTATTGACCGGATGGAAATCACAGATGCGGGTGCATT
ATGGGCCTGGCTGGAAAACAACGCGGCGAGCCGGGACGGCTTGTGGTTGG
TCACTTACAAGAGAGAACAGGGGCCACACCATGTGGCCCCGAATGCGGTG
CGGGATGCGCTGATTGCCTATGGCTGGGTTGATGGAAAGCGGGTGACGTT
GGACGCCGCGCGGACGATGCAGATGATCGCGCCGTGGCAGCAAAAGATTT
GGGCTGCGAGT
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