mRNA_C-australica_Contig_1010.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1010.1.1
Unique NamemRNA_C-australica_Contig_1010.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A8K1FLY0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLY0_PYTOL)

HSP 1 Score: 62.4 bits (150), Expect = 8.820e-7
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:  879 RDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            +D K  ++C S     +KS+  +PCRHLCLCQ CSQH  +++CPICR  ++   +VY
Sbjct:  857 QDHKLCVICLSN----EKSILCLPCRHLCLCQECSQHQELDKCPICRLGVDNMLLVY 909
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A7S4DHZ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHZ0_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.580e-6
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 3 
Query:  882 DAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            +  + ++C+ ENA   KS+ ++PCRHLCLCQ CS++  +  CP+CR DI+ T  V+
Sbjct:  148 EQNQCVICQ-ENA---KSILILPCRHLCLCQSCSENPRLKSCPLCRNDIKETLQVF 199
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A7S3H223_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H223_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.600e-6
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 3 
Query:  882 DAKEALLCRSE--NAVEQ----------KSVFLIPCRHLCLCQPCSQHDGMNRCPICREDI 1028
            +AK+A+L R++  N  EQ          KSV L+PCRHLC+C  CS HD +  CP+CRE I
Sbjct:   66 EAKKAVLIRNQIGNQKEQRVCVVCQEHEKSVVLLPCRHLCVCDVCSTHDLLKMCPLCREPI 126
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A485KWE6_9STRA (Aste57867_12514 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWE6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.310e-6
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 3 
Query:  846 RRSLFS*EEMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            R++L    E+ ++ K  ++C +     +K++  +PCRH+C+C+ C+ H+ M RCPICR +IE   ++Y
Sbjct:  623 RQALDRQVEVHQELKLCVVCMAT----EKTILCLPCRHVCMCEACANHEQMQRCPICRLEIEEKMLIY 686
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A1V9Z0G8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z0G8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.960e-6
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E  ++ K  ++C S     +K++  +PCRH+C+CQ CS H+ + RCPICR +IE   ++Y
Sbjct:  473 EEQQELKLCVICLSA----EKTILCLPCRHVCMCQECSNHNEVVRCPICRLEIEEKMVIY 528
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A482S6W3_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6W3_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 8.030e-6
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 3 
Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDI 1028
            E  ++ +  ++C+ EN   +K+V L+PCRHLCLC  CS H  ++ CP+CRE I
Sbjct:   81 EAQKEQRLCVICQ-EN---EKTVVLLPCRHLCLCDGCSVHSALDMCPLCREAI 129
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A067D9C5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D9C5_SAPPC)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-5
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E+ ++ K  ++C +     +K++  +PCRH+C+CQ CS H  + RCPICR DI+   ++Y
Sbjct:  633 EVQQELKLCVICLTA----EKTILCLPCRHVCMCQACSGHAEVTRCPICRLDIQEKMLIY 688
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BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: T0S2N8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S2N8_SAPDV)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-5
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E+ ++ K  ++C +     +K++  +PCRH+C+CQ CS H  + RCPICR DI+   ++Y
Sbjct:  636 EVQQELKLCVICLTA----EKTILCLPCRHVCMCQACSGHAEVTRCPICRLDIQEKMLIY 691
[Close]
BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: K3X4I9_GLOUD (RING-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4I9_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-5
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 3 
Query:  870 EMPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIEITQIVY 1049
            E  ++ K  ++C S     +KS+  +PCRHLCLC+ CS H+ + +CPICR  I+   +VY
Sbjct:  877 EEQQELKLCVICLSN----EKSILCLPCRHLCLCESCSAHEEVEKCPICRLHIDEMLLVY 932
[Close]
BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Match: A0A7S3XJT7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJT7_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  930 KSVFLIPCRHLCLCQPCSQHDGMNRCPICREDIE 1031
            KSV ++PCRHLCLCQ CS++  +  CP+CRE+IE
Sbjct:  138 KSVLILPCRHLCLCQGCSENQLLRTCPLCRENIE 171
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A8K1FLY0_PYTOL8.820e-745.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4DHZ0_HETAK1.580e-644.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3H223_9STRA1.600e-647.54Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A485KWE6_9STRA4.310e-635.29Aste57867_12514 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z0G8_9STRA4.960e-640.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A482S6W3_9ARCH8.030e-645.28RING-type domain-containing protein n=1 Tax=archae... [more]
A0A067D9C5_SAPPC1.010e-538.33Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0S2N8_SAPDV1.010e-538.33Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
K3X4I9_GLOUD1.120e-541.67RING-type domain-containing protein n=1 Tax=Globis... [more]
A0A7S3XJT7_HETAK1.270e-561.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1010contigC-australica_Contig_1010:381..2033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000021592
PFAMsRRM_1,zf-C3HC4_3
Model size1184
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.4e-09
EggNOG OGs28YBZ@1|root,2R55T@2759|Eukaryota,1MATW@121069|Pythiales
DescriptionZinc finger, C3HC4 type (RING finger)
Cds size186
COG categoryA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1010.1.1prot_C-australica_Contig_1010.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1010 1412..1907 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.1982353-UTR-C-australica_Contig_1010:380..8321682586746.1982353-UTR-C-australica_Contig_1010:380..832Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1010 381..832 +
1682586746.2080066-UTR-C-australica_Contig_1010:991..14111682586746.2080066-UTR-C-australica_Contig_1010:991..1411Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1010 992..1411 +
1682586746.2502458-UTR-C-australica_Contig_1010:1907..20331682586746.2502458-UTR-C-australica_Contig_1010:1907..2033Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1010 1908..2033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586746.216202-CDS-C-australica_Contig_1010:1411..14941682586746.216202-CDS-C-australica_Contig_1010:1411..1494Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 1412..1494 +
1682586746.2254484-CDS-C-australica_Contig_1010:1606..16691682586746.2254484-CDS-C-australica_Contig_1010:1606..1669Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 1607..1669 +
1682586746.2366915-CDS-C-australica_Contig_1010:1867..19071682586746.2366915-CDS-C-australica_Contig_1010:1867..1907Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1010 1868..1907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1010.1.1

>prot_C-australica_Contig_1010.1.1 ID=prot_C-australica_Contig_1010.1.1|Name=mRNA_C-australica_Contig_1010.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=62bp
MPRDAKEALLCRSENAVEQKSVFLIPCRHLCLCQPCSQHDGMNRCPICRE
DIEITQIVYIS*
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mRNA from alignment at C-australica_Contig_1010:381..2033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1010.1.1 ID=mRNA_C-australica_Contig_1010.1.1|Name=mRNA_C-australica_Contig_1010.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1653bp|location=Sequence derived from alignment at C-australica_Contig_1010:381..2033+ (Chrysoparadoxa australica CS_1217)
GGATGAGCATGGGCATGCTGTCAACCGTGCCTTTGGGCTGTCATGCTTTG
TTGAGAGGGACGGAGGGGAGCACACGCCAGAGACCGGAACATAAAATGGA
TGGGCGAGTAATTATTAATTAGGAGAGAGAATACCTTATTCATGCCAGAA
GGGAATGAGCTCGGCTGAAATTGCACTACCTTGTTCTTTGCAGCCCCAGA
GATGATTCAACACGAGCCTTATAGCGAGGGTGCTGATGTCTACAGCTATG
GCATTGTACATTTTCATTTGCTCTGCTCTTGCCTTGTTGGGTTAGGGTTA
GGGCAATAGGCAACTGGCAGCTTGTGTGACTTTGGCACCGTTACCCTTCA
GGGTTACGACCCAGGCTACCTCCTGTTACACCTGATGCATTAGCCAAGCT
GGTGCGAAGTTGCTGGCATGGGGTAGCTAGCCGAAGACCATCCTTTGATC
AGGTGAGAGAGAATACTTGAGTCAAGCAAACAAACTGACCCTCTCCTCGC
CTTGCTCAAGCCCTTTGCTTGATGCATTCACAGACGCATTTACTAAAGCC
TTTGCTATATATGTGCCTTTCTTCCCTCGGATCTGCCAAATGATTCCTGA
CGTGACATTAGTGGCGCAACACAGTGATTTGCCTCAGCAAGGACTGCTTG
GGGGCACACATTCATCAGACAGCCACCTAAACCAGTGCTTGGGCCCGCCG
GCCACAAGCTTGGGACACTATCTTTCAGCTGCTGACAGGGCTTTTGTGAT
TTGTGAAAACAACAAGCAAAAATACTAATATGGTGGCAGCTCTACATGGG
AAGCTGAATACATTGCTTGAATATACCACCATGCTGCCACCTACTGGTGT
AAAATCTCCACCTCTTGCTCCGATGCCTCCTCCTCCTGCTGGTGCTGCTG
GTGCTGCTGGTGCTGCTGTGCTGCCAGGTTAGGCCTTGCTGTCACGCAAG
ATTTGCTTCATGATGCGTGTGACACGCTGCATCATGAACATGACCCTCTT
CTGGCGCCGGTCTTTATTCTCTTAAGAGGAAATGCCGAGAGATGCAAAGG
AAGCTTTGCTTTGCAGATCAGAAAATGCAGTTGAGCAGAAGAGTGTGTTC
CTCATCCCCTGCAGGTAGCTGCCTGAGAGAACAAGCCCTATAGAGTAGCC
ACAGCTTAGCTAACCAATAGATACCCAAGTATATAACCCACGTGAAGTCC
TAGCAAGCTCCCTGTCTTCCCTGCAGACACTTATGTTTATGCCAGCCCTG
CTCTCAGCATGATGGCATGAACAGATGTCCAATCTGCAGGTAGCTCTGGT
CTTTTGAGCCCACCTCCTGAACAGCTCAACCACCCTCAATAGCTCACTCA
TTCAAACTGTGGTGAGCCTCGCTCGCCTCATCATTTCCCCTATAATCGCA
GCCGTATCAAACCATCTCCTATCTCTCTTGCCATTCACCTCTAATCTAAC
ACTAACCCTTCCCTTACCCTTTTACCCTCACCCTTAGGGAAGATATTGAG
ATTACTCAGATTGTATACATCAGCTGAGGAATGTGAGGCCCCTGCAAAGG
GAGTATTATAGCTACCAACTGAATCAAGACCTTTATTGAAGAGTTTGGAG
CTTTCATTTACATCAGGATCAAGAGTTGAGGGTGTTGTGGTACCACCTCT
CAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1010:381..2033+

>mRNA_C-australica_Contig_1010.1.1 ID=mRNA_C-australica_Contig_1010.1.1|Name=mRNA_C-australica_Contig_1010.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=186bp|location=Sequence derived from alignment at C-australica_Contig_1010:381..2033+ (Chrysoparadoxa australica CS_1217)
ATGCCGAGAGATGCAAAGGAAGCTTTGCTTTGCAGATCAGAAAATGCAGT
TGAGCAGAAGAGTGTGTTCCTCATCCCCTGCAGACACTTATGTTTATGCC
AGCCCTGCTCTCAGCATGATGGCATGAACAGATGTCCAATCTGCAGGGAA
GATATTGAGATTACTCAGATTGTATACATCAGCTGA
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