mRNA_C-australica_Contig_101.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_101.2.1
Unique NamemRNA_C-australica_Contig_101.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_101.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_101contigC-australica_Contig_101:703..2523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size982
Hectar predicted targeting categoryother localisation
Exons11
Cds size867
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_101.2.1prot_C-australica_Contig_101.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_101 703..2408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586742.5878482-CDS-C-australica_Contig_101:702..7621682586742.5878482-CDS-C-australica_Contig_101:702..762Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 703..762 +
1682586742.5959175-CDS-C-australica_Contig_101:833..9121682586742.5959175-CDS-C-australica_Contig_101:833..912Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 834..912 +
1682586742.6036866-CDS-C-australica_Contig_101:1024..11431682586742.6036866-CDS-C-australica_Contig_101:1024..1143Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 1025..1143 +
1682586742.619395-CDS-C-australica_Contig_101:1237..13561682586742.619395-CDS-C-australica_Contig_101:1237..1356Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 1238..1356 +
1682586742.6303387-CDS-C-australica_Contig_101:1431..15601682586742.6303387-CDS-C-australica_Contig_101:1431..1560Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 1432..1560 +
1682586742.640075-CDS-C-australica_Contig_101:1630..17051682586742.640075-CDS-C-australica_Contig_101:1630..1705Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 1631..1705 +
1682586742.6498656-CDS-C-australica_Contig_101:1801..18461682586742.6498656-CDS-C-australica_Contig_101:1801..1846Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 1802..1846 +
1682586742.6601167-CDS-C-australica_Contig_101:1937..20131682586742.6601167-CDS-C-australica_Contig_101:1937..2013Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 1938..2013 +
1682586742.6699739-CDS-C-australica_Contig_101:2086..21331682586742.6699739-CDS-C-australica_Contig_101:2086..2133Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 2087..2133 +
1682586742.6878421-CDS-C-australica_Contig_101:2217..22861682586742.6878421-CDS-C-australica_Contig_101:2217..2286Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 2218..2286 +
1682586742.7001696-CDS-C-australica_Contig_101:2359..24081682586742.7001696-CDS-C-australica_Contig_101:2359..2408Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 2360..2408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586742.716814-UTR-C-australica_Contig_101:2408..25231682586742.716814-UTR-C-australica_Contig_101:2408..2523Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 2409..2523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_101.2.1

>prot_C-australica_Contig_101.2.1 ID=prot_C-australica_Contig_101.2.1|Name=mRNA_C-australica_Contig_101.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=289bp
MAPGLPDLLYKMETGDSHALALPPPAYGAASGKHEKPQSTQPHASPATGQ
GKEGDSSVAFDGLPGSVAPLPRGGPAPVPSGFEHAELASQLASLPLEAQG
KGKATGENFGKVLTAPTPMAGSSSSTSRAKKSRHVEFGPVYTTENSNFQK
PGHSRYFLFDEVYDYHTQGWYPARLKGVGSPAGKRRDFRVTASKYSVIQG
TFFTFILGRHGRVPSEPSETHRSPRSTVKILPRKDEIPKILEQYHNHTHS
GINKARELLSRSYKIEDFDRFYSETKQKCAQCNQSKDS*
back to top

mRNA from alignment at C-australica_Contig_101:703..2523+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_101.2.1 ID=mRNA_C-australica_Contig_101.2.1|Name=mRNA_C-australica_Contig_101.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1821bp|location=Sequence derived from alignment at C-australica_Contig_101:703..2523+ (Chrysoparadoxa australica CS_1217)
ATGGCTCCAGGGCTGCCTGACCTGCTGTACAAGATGGAGACAGGCGACTC
ACATGCCTTGGTGCGTAAGGACAATCAGAAGCTCCTTCCTCGGCTCTTCA
CTTCTCACCTTGACTGCTCTGTGTGACTCAGGCACTACCGCCGCCTGCGT
ATGGTGCTGCCAGCGGGAAGCATGAGAAGCCTCAGTCTACGCAGCCACAC
GCCAGTCCAGGTCATCTATCTATTCTCTACCAATTGCGACTGAATAGGAC
CAATAGGCTGCCTGCTTCCCACTCCCCTCATCTCCGGCCCTCACCTCTCC
CCTTACCTCAATTAAATAAAAGCAACAGGCCAAGGCAAAGAGGGAGATAG
TTCTGTGGCGTTTGACGGGCTGCCTGGCTCCGTGGCGCCTCTGCCCCGGG
GCGGCCCAGCTCCAGTGCCAAGTGGCTTTGAGCACGCGGAGGTAGGGAAG
TGCAAGTGCAAGTGCAAGTGCCTCCCATCACCCCCTCCTCTGACCTCCCT
CTGACTTGTCCTGACACTCTCCTCTCCTCTCTCAGCTGGCTTCTCAGCTA
GCATCCCTGCCCTTGGAGGCACAAGGAAAGGGCAAGGCGACGGGTGAAAA
CTTTGGGAAGGTCCTCACGGCCCCGACCCCAATGGCTGGCAGCAGCTCCT
CCACGTAAGATATCAAGATGTTAAGCTGTAGCTGAGCTCATGTGCCTGCT
CTAACCCTGGACTGGCTCTTGCTCATCAGGTCACGAGCCAAGAAAAGTCG
CCATGTAGAGTTTGGCCCTGTCTACACAACTGAAAACAGCAACTTTCAGA
AACCGGGCCACAGCCGCTACTTCCTTTTTGATGAAGTGTATGACTATCAT
ACGCAGGGGTAAGCTCTTGCTCATCTCTTGATTGAGGCTCACCTCTCTCT
AACTACGTGCTCTTGTGCTGCATGGCAGGTGGTACCCAGCGAGGCTCAAG
GGGGTAGGGAGCCCAGCAGGGAAGCGCAGGGACTTCCGTGTCACCGCCTC
CAAGTACAGTTGCAGCAAAATCTAGCCTGACTGGCTAGTTCCTCTCCTGA
TTGATGATTCATTCCCATTGCTCACTCTCTCTTCTTCTCTTCCCCTTAGG
TACAGCGTCATTCAAGGGACCTTCTTCACCTTCATACTGGGGAGGTGGGA
GAATTAATTGCACTCCGGCGGCGCTGACTTGGAACAGAGCTCTCACTCCT
TACCCCACTCATTGCCACTATTGCAACTACCACAGGCATGGCCGTGTGCC
ATCAGAACCATCAGAGACCCACCGCAGCCCAAGGAGCACTGTAAAAATAC
TTCCTCGCAAGGTGCTGCCGACTAGACTAGTACACGCGCCAGTTCAGCCT
TATGTAACACCATCTCCCCTCCCCTGCCACACAGGATGAGATTCCCAAGA
TCTTGGAGCAGTATCACAATCACACGCATAGGTAGGTGGTTGGCAAATAG
TGAGAGCATGTCTTGCGGCAGCTTGCCTTCTCACTACTTCCTCCTTCCTC
TACCCTCTCCTGCAGTGGTATCAACAAGGCTAGGGAGCTCTTGTCAAGAA
GCTATAAGATTGAAGACTTTGATCGGTTTTATAGGTATTCCAGCCCCCGC
CCCAACCTGGCTGGCTAACTTGACCTCACTTGAACCTCTCAATCCACCCA
CCCTTAGTGAGACAAAGCAGAAGTGCGCTCAGTGCAATCAGAGTAAGGAC
TCCTGAAGGAGCAGCCGTGGCTGGCTCTTCGCGAGTTACACTTTTGACCT
GGTACTGGAGCTACAGTTTTGCGCAAGATATGGATTTCATGAGATCTGCT
GGCATAGATCAGTGGCAAGGA
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_101:703..2523+

>mRNA_C-australica_Contig_101.2.1 ID=mRNA_C-australica_Contig_101.2.1|Name=mRNA_C-australica_Contig_101.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=867bp|location=Sequence derived from alignment at C-australica_Contig_101:703..2523+ (Chrysoparadoxa australica CS_1217)
ATGGCTCCAGGGCTGCCTGACCTGCTGTACAAGATGGAGACAGGCGACTC
ACATGCCTTGGCACTACCGCCGCCTGCGTATGGTGCTGCCAGCGGGAAGC
ATGAGAAGCCTCAGTCTACGCAGCCACACGCCAGTCCAGCAACAGGCCAA
GGCAAAGAGGGAGATAGTTCTGTGGCGTTTGACGGGCTGCCTGGCTCCGT
GGCGCCTCTGCCCCGGGGCGGCCCAGCTCCAGTGCCAAGTGGCTTTGAGC
ACGCGGAGCTGGCTTCTCAGCTAGCATCCCTGCCCTTGGAGGCACAAGGA
AAGGGCAAGGCGACGGGTGAAAACTTTGGGAAGGTCCTCACGGCCCCGAC
CCCAATGGCTGGCAGCAGCTCCTCCACGTCACGAGCCAAGAAAAGTCGCC
ATGTAGAGTTTGGCCCTGTCTACACAACTGAAAACAGCAACTTTCAGAAA
CCGGGCCACAGCCGCTACTTCCTTTTTGATGAAGTGTATGACTATCATAC
GCAGGGGTGGTACCCAGCGAGGCTCAAGGGGGTAGGGAGCCCAGCAGGGA
AGCGCAGGGACTTCCGTGTCACCGCCTCCAAGTACAGCGTCATTCAAGGG
ACCTTCTTCACCTTCATACTGGGGAGGCATGGCCGTGTGCCATCAGAACC
ATCAGAGACCCACCGCAGCCCAAGGAGCACTGTAAAAATACTTCCTCGCA
AGGATGAGATTCCCAAGATCTTGGAGCAGTATCACAATCACACGCATAGT
GGTATCAACAAGGCTAGGGAGCTCTTGTCAAGAAGCTATAAGATTGAAGA
CTTTGATCGGTTTTATAGTGAGACAAAGCAGAAGTGCGCTCAGTGCAATC
AGAGTAAGGACTCCTGA
back to top