mRNA_C-australica_Contig_1008.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1008.2.1
Unique NamemRNA_C-australica_Contig_1008.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.110e-37
Identity = 103/284 (36.27%), Postives = 155/284 (54.58%), Query Frame = 3
Query:   96 MGVLSIQADETALSLFRRCNTVPFSTGISFLDGA------------GIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEMGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRA-----------GTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLVVAIDSLGSLVGKSKLSDS----ALVLQNAALRATARLASERSVVVMAAKPALFANLGWGQGMGNRSGSKMEHWEYMPSAWQKVVSHRVMLQR 866
            M  LS+Q DETAL LFRR +  P  TG++F D              G+  GDVVE+YGPS SGKSE+L+NVV + V+P  +GG    AV  D DG LS+LR+EQ+L+ ++  +  F+            GT+     A P+ +     +  +  V++ C++R++ V      +L+AA+EVL +E      +VV +D +GS   + K++ S    A+ +Q    +A  RL  ER VV+ AAK         G+ +G+ +    EH EY+P  WQ+ V+ RV+LQR
Sbjct:    1 MMALSVQDDETALELFRRAHHKPLLTGLAFFDEVPAGSGSSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIH----ASPSRLQ--QLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVV-VDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKN--------GKDLGDAA---TEHREYLPQIWQRAVTFRVLLQR 266          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.180e-28
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 3
Query:   96 MGVLSIQADETALSLFRRCNTVPFSTGISFLDGA------------GIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEMGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRA-----GTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLVVAIDSLGSLVGKSKL 647
            M  LS+Q DETAL LFRR N  P  TG++F D              G+  GDVVE+YGPS SGKSE+L+NVV + V+P  +GG    AV  D DG LS+LR+EQ+L+ ++  +  F+      G          +   P   +  +  V++ C++R++ V      +L+AA+EVL +E      +VV +D +GS   + K+
Sbjct:    1 MMALSVQDDETALELFRRANHKPLLTGLAFFDEVPAGSGGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVV-VDGMGSFFWQDKV 200          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A1Y1IMM9_KLENI (DNA recombination and repair protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMM9_KLENI)

HSP 1 Score: 92.4 bits (228), Expect = 3.400e-17
Identity = 87/341 (25.51%), Postives = 143/341 (41.94%), Query Frame = 3
Query:  111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEM-----GGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQ-------EATLVVAIDSLGSLVGKSK-----------LSDSALVLQNAALRATARLASERSVVVMAAKPALFANLGW---GQGMGNRSGSKME---------------------HWEYMPSAWQKVVSHRVMLQ--RVPDQGEGQ-----GFTLFNACVVQPHEGRAAEALVMSADP 971
            +Q DE+      R    P  T + F+D A I  G+VVE++G S SGK+E+L   V   +LP E+     GG    A+  DLDG   +LR+ ++L  R+  +   + G           + D       ++ V    ++R + + C N   L+AA+++L  E  Q       ++  ++ IDS+G+     K           L+ S L    A +     +      +++A K A+ A   W   G G    SG   +                     H EYMP+ WQ  V+HR++LQ    PD G        G  +F+A   +P     A+ +++  +P
Sbjct:   16 LQPDESMRDFLLRTFVEPLGTSVPFIDSAAIRPGNVVEIFGASGSGKTEILTQAVATCILPSEVDGVGYGGAGGAALFFDLDGRFDILRLVRILESRINEAQVAQGG----------GDAD------ALSQVFTASLRRFRLLHCHNSFHLLAALKMLQPEIRQIVQNHGPDSLHLICIDSIGAFHWLDKGLHLWAGHRDALTQSGL--SKAVVTELKHIMKRHRPLMLATKSAIGAPNRWRPYGSGSTTASGRSPQEGARGSHEDEDPELPQKAVLYHKEYMPAVWQDFVTHRLVLQGPASPDPGGPHQQALLGPPVFSAQWEKPPGSDIAKFVILDVNP 338          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: W7U480_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U480_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.570e-17
Identity = 98/310 (31.61%), Postives = 138/310 (44.52%), Query Frame = 3
Query:  192 GAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEMGGRASRAVCVDLDGNLSVLRIEQMLRERV------------------------GASAC-----------FRAGTMP---IPDVALPAEVDPGSPEGRVTSVMLQC-MQRIKFVSCQNHLQLIAAMEVLHY-----ESAQEATLVVAIDSLGSLVGKSKLSDSALVLQNA----ALRATARLASERSVVVMAAKPALFANL----------GWGQGMGNRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPDQGEGQGFTLFNACVV-----QPHE 932
            G G++ G V+E+YG S SGK+E+ LN V   VLP++  G    AV VD+D  + V R+  +L  R+                        G S             FRA TM     PD A   +    +P      V  Q  M ++  V C + L+  + +E L Y     E A   TLVV +DSLGS   + K ++S    Q+       R   R+A  ++V V+A KPALFA            G  +G G      +EH EYMP  W ++V+HR+ L  V + GEG    +F+A  V     QPH+
Sbjct:   68 GGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQGTKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTP-----FVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVV-LDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTL--VKEGGEGGREAVFSARAVLLGALQPHQ 369          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A445A873_ARAHY (RECA_2 domain-containing protein n=11 Tax=Arachis TaxID=3817 RepID=A0A445A873_ARAHY)

HSP 1 Score: 90.9 bits (224), Expect = 6.480e-17
Identity = 77/287 (26.83%), Postives = 127/287 (44.25%), Query Frame = 3
Query:  111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEM-----GGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQE-----ATLVVAIDSLGSLVGKSKLS---------DSALVLQN---AALRATARLASERSVVVMAAKPALFANL---------GWGQGMGNRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPDQ 878
            I  DETA  + RR + +  +  +  L    +  G+V+E++GPSPS K+++L+ V +  VLPKE      GG     + +DLD    + R  QML  R+            + D+                     CMQR  +  C N  + +  ++ LHY   +E     +  ++ IDS+G+     + S            L LQ+   A ++   +L     ++V+A K  +F N          G  + +  RS   +++ EYMPS WQ  V+HR++L+R  DQ
Sbjct:   16 IDGDETAHYMLRRISALRSTLLVPPLHRVPLRLGNVIEIFGPSPSAKTQILIQVAINCVLPKEWNGVRYGGFDHSVLFLDLDCRFDISRFSQMLTHRIMEGNAIGDCDKTLYDL---------------------CMQRFLYARCSNSFEFLQTLKSLHYRLKREKDHGVSVQLLLIDSIGAFHWVDRASMFLSLKEHNRKKLFLQSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNTYSTASEEVNGCSRNV-TRSPQHIQYREYMPSVWQSFVTHRILLRRSDDQ 280          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A059Q132_9POAL (RECA_2 domain-containing protein n=2 Tax=Saccharinae TaxID=1648026 RepID=A0A059Q132_9POAL)

HSP 1 Score: 90.5 bits (223), Expect = 9.210e-17
Identity = 87/279 (31.18%), Postives = 128/279 (45.88%), Query Frame = 3
Query:  111 IQADETALS-LFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQC----------MQRIKFVSCQNHLQLIAAMEVLHYESAQEAT----LVVAIDSLGSLVGKSKLSDSALVLQNAALRATARLASERSVVVMAAKPALFANLG---WGQGMG-----NRSGSKMEHWEYMPSAWQKVVSHRVMLQ 863
            +  +ETA++ L R  ++ P  T    L  A +  G+VVE+ GPS SGKS LLL   +Q +LPKE      GG     + +DLD    VLR+ Q+LR R+ A  C  A             +  G PE   T    QC          MQR  +  C N L+ IAA++ +  +S +E +      V IDS+G+     + S  A   +   L++           ++  +PAL        +G+G       NR   ++ + EYMPS WQ  V+HR+ LQ
Sbjct:   13 LAVNETAVAFLSRSLSSRPPITLPPPLHRAPLRPGNVVEIAGPSNSGKSHLLLMAAVQCILPKEWEGIYFGGLGRAVMYLDLDCRFDVLRLVQILRNRI-AKGCRSA------------HLRNGDPENDGTKDEFQCSLENTLFSDCMQRFLYARCCNSLEFIAALKTVQSQSRREVSGAGIYFVMIDSIGAFYWIDRGSQPARENKGRTLQSITESVVHELRKLLQLQPALVLVTKAPIYGEGTTTANDFNRGKKELSNREYMPSIWQSFVTHRINLQ 278          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A8B7BQY3_PHODC (DNA repair protein XRCC2 homolog isoform X5 n=5 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7BQY3_PHODC)

HSP 1 Score: 90.1 bits (222), Expect = 1.010e-16
Identity = 86/300 (28.67%), Postives = 137/300 (45.67%), Query Frame = 3
Query:  111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSV-------MLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLV------VAIDSLGSL-----------VGKSKLSDSALVLQNAA---LRATARLASERSVVVMAAKPALF--------ANLGWGQGMGNRS---------GSKMEHWEYMPSAWQKVVSHRVMLQ 863
            I  DETA ++  R  T      +  L    +  G+VVE+ GPSPS KS++LL+  +  +LP+E      GG     +  DLD    VLR+ Q+L+ R+   A   A +    D     + D       +T +        L CM+R  ++ C +  + +AA++ +H+   +E+  +      + IDS+G+            +G SK  +  L LQN A   ++   +L   + V+V+A K  +F        A   +G+    R          G K+ + EYMPSAWQ  V+HRV LQ
Sbjct:    9 IHGDETAKAMLARVLTERPFLFLPPLHRVPLRVGNVVEIAGPSPSAKSQILLHAAVHCILPEEWKGIRFGGLERMVMYFDLDCRFDVLRLSQILKHRI-MEAYKSANSTYWEDNGEYQKYD----ATEITQMCFCDDELFLACMRRFLYIRCYSSFEFLAALKAMHFHLQRESEALGVGLHFLMIDSIGAFYWIDRACQPMPIGGSKRKN--LSLQNVAEAVVQEICKLLQTQPVLVLATKATIFGAGTSGNDAQRAFGKWCSERKMDSRTLSKEGEKLLYREYMPSAWQSFVTHRVRLQ 301          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A6G1CQT2_9ORYZ (RECA_2 domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A6G1CQT2_9ORYZ)

HSP 1 Score: 88.6 bits (218), Expect = 5.630e-16
Identity = 87/301 (28.90%), Postives = 134/301 (44.52%), Query Frame = 3
Query:  111 IQADETALS-LFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLV------VAIDSLGSLVGKSKLSDSALVLQNAALRATARLASE------------RSVVVMAAKPALFANLGWGQG-------------------MGNRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPDQGE 884
            +  DETA + L R  +  P       L  A +  G+VVE+ GPS SGKS+LLL   +Q +LPKE     +GG     + +DLD    VLR+ QMLR R+ A  C    T    +     +   GS E  + S    CM+R  +  C N    IAA++ +H +S  ++ ++      + IDS+GS     +  DS  + +N     + +  +E            + V+VMA K  ++   G+  G                    G      + + E+MPS WQ  V+HR+ LQ +  + E
Sbjct:   13 LSVDETAAAFLSRSLSARPPILLPPPLHRAPLRPGNVVEIAGPSNSGKSQLLLTAAVQCILPKEWKGAYLGGLGKAVMYLDLDCRFDVLRLAQMLRNRI-AECC--GSTNSTNEEFAKDDATNGSAENTLFS---DCMKRFLYARCYNSSDFIAALQNMHSQSQAKSKVLSVGIYFLMIDSIGSFYWMDR--DSQPITENKGRTLSLQSMTEIVVQKLRNFLQLQPVLVMATKAPIYGE-GFMAGNDFPRGTSKQTSEDSTMRCAGQEEEKNISYREFMPSVWQSFVTHRIKLQDLGQEAE 304          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A2G9GVI2_9LAMI (DNA repair protein, member of the recA/RAD51 family n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GVI2_9LAMI)

HSP 1 Score: 87.8 bits (216), Expect = 7.120e-16
Identity = 79/291 (27.15%), Postives = 129/291 (44.33%), Query Frame = 3
Query:  111 IQADETAL-SLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKEM-----GGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQE------ATLVVAIDSLGSLVGKSKLSDSA---------LVLQNAA---LRATARLASERSVVVMAAKPALFANLGWGQGMGNRS--GSKMEHWEYMPSAWQKVVSHRVMLQRVPDQGEGQGFTLF 905
            I+ADETA  +L R     P       L    +  G+VVE+ GPSPS K+ +L+   +  +LPKE      GG     + VDL+    VL   + L  R+  +   R+                G+ +     +   CM+R  +  C N  + +A ++ LHY   +E      A  ++ IDS+G+     + + S+         L LQ  A   ++   RL     ++V+AAK  + A    G+    ++       H +YMPS WQ +VSHR++L+   D+ + Q   +F
Sbjct:    8 IKADETAKEALVRILTERPVVVLPPPLHRLPLRVGNVVEIVGPSPSAKTLILIQAAISCILPKEWKSEQYGGLERAVLFVDLECRFDVLSFSRALERRIIGANGLRSSMK-------------GNEKDYDKELFAACMKRFLYTRCYNSFEFLATLKTLHYRLQKEKEKQGGAVYMLMIDSIGAFYWVDRAAPSSSTGKNNRKSLSLQTVAESVVQEIQRLLLVNPMLVLAAKSTIEAIRNPGKWSDEKAVGARNQSHRDYMPSVWQSLVSHRILLRGSDDERKYQNHPIF 285          
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Match: A0A6J0PF77_ELAGV (DNA repair protein XRCC2 homolog isoform X1 n=3 Tax=Cocoseae TaxID=169705 RepID=A0A6J0PF77_ELAGV)

HSP 1 Score: 83.6 bits (205), Expect = 3.500e-14
Identity = 83/319 (26.02%), Postives = 140/319 (43.89%), Query Frame = 3
Query:  111 IQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPSGKSELLLNVVLQTVLPKE-----MGGRASRAVCVDLDGNLSVLRIEQMLRERVGASACFRAGTMPIPDVALPAEVDPGSPEGRVT-------SVMLQCMQRIKFVSCQNHLQLIAAMEVLHYESAQEATLV------VAIDSLGSL-----------VGKSKLSDSALV-LQNAALRATARLASERSVVVMAAKPALFA---------------NL----------GWGQGMG---------NRSGSKMEHWEYMPSAWQKVVSHRVMLQRVPD 875
            I  DETA ++  R  T      +  L    +  G+VVE+ GPSPS KS++LL+  +  +LP+E      GG     +  DLD    VLR+ Q+L+ R+     +R+      +     + +    +   T        + L CM+R  ++ C N  + +AA++ +H  S +E+  +      + IDS+G+            +G SK  + +L  L  A ++   +L   + V+V+A K  +F                NL           +G+            +R G K+ + EYMPS+WQ  V+HRV LQ + +
Sbjct:    9 IHGDETAKAMLSRILTERPFLFLPPLHRVPLRVGNVVEIAGPSPSAKSQILLHAAVNCILPEEWKGIRFGGLGRMVMYFDLDCRFDVLRLSQILKHRI--MEAYRSTN----NTYWKEKGEHQKNDAPTTHMYLCDDELFLDCMRRFLYIRCYNSFEFLAALKAMHSHSQRESEALGVSVHFLMIDSIGAFYWMDRACQPMPIGGSKRKNVSLQSLAEAVVQEICKLLQMQPVLVLATKATIFGAGTSGNDAQRLAHDVNLPILRSTSSTRAFGKWCSEGKMDSRTSSREGEKLMYREYMPSSWQSFVTHRVHLQALDE 321          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE1.110e-3736.27Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI3.180e-2836.82Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A1Y1IMM9_KLENI3.400e-1725.51DNA recombination and repair protein n=1 Tax=Klebs... [more]
W7U480_9STRA3.570e-1731.61Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A445A873_ARAHY6.480e-1726.83RECA_2 domain-containing protein n=11 Tax=Arachis ... [more]
A0A059Q132_9POAL9.210e-1731.18RECA_2 domain-containing protein n=2 Tax=Saccharin... [more]
A0A8B7BQY3_PHODC1.010e-1628.67DNA repair protein XRCC2 homolog isoform X5 n=5 Ta... [more]
A0A6G1CQT2_9ORYZ5.630e-1628.90RECA_2 domain-containing protein n=2 Tax=Oryza Tax... [more]
A0A2G9GVI2_9LAMI7.120e-1627.15DNA repair protein, member of the recA/RAD51 famil... [more]
A0A6J0PF77_ELAGV3.500e-1426.02DNA repair protein XRCC2 homolog isoform X1 n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1008contigC-australica_Contig_1008:6702..9292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPE2
Preferred nameXRCC2
PFAMsRad51
Model size1124
Max annot lvl2759|Eukaryota
KEGG rclassRC00561
KEGG koko:K00454,ko:K10879,ko:K17890,ko:K21052
KEGG ReactionR03626,R07864,R07869
KEGG Pathwayko00515,ko00591,ko00592,ko01100,ko01110,ko03440,ko04136,ko04138,ko04140,ko04621,map00515,map00591,map00592,map01100,map01110,map03440,map04136,map04138,map04140,map04621
KEGG ModuleM00113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000226,GO:0000278,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001756,GO:0003002,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007127,GO:0007131,GO:0007275,GO:0007389,GO:0007399,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009952,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010720,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035264,GO:0035282,GO:0035825,GO:0040007,GO:0042148,GO:0042623,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045003,GO:0045595,GO:0045597,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051321,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060429,GO:0060548,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901214,GO:1901215,GO:1901360,GO:1901363,GO:1903046,GO:2000026,GO:2000269
Exons11
Evalue6.46e-30
EggNOG OGsKOG2859@1|root,KOG2859@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_004600.1
EC1.13.11.12
Descriptionmeiotic DNA recombinase assembly
Cds size918
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029,ko03400,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1008.2.1prot_C-australica_Contig_1008.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1008 6797..9181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586741.4886441-UTR-C-australica_Contig_1008:6701..67961682586741.4886441-UTR-C-australica_Contig_1008:6701..6796Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1008 6702..6796 +
1682586741.587951-UTR-C-australica_Contig_1008:9181..92921682586741.587951-UTR-C-australica_Contig_1008:9181..9292Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1008 9182..9292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586741.5026624-CDS-C-australica_Contig_1008:6796..69191682586741.5026624-CDS-C-australica_Contig_1008:6796..6919Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 6797..6919 +
1682586741.5104797-CDS-C-australica_Contig_1008:6988..71091682586741.5104797-CDS-C-australica_Contig_1008:6988..7109Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 6989..7109 +
1682586741.5182672-CDS-C-australica_Contig_1008:7192..73051682586741.5182672-CDS-C-australica_Contig_1008:7192..7305Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 7193..7305 +
1682586741.5260372-CDS-C-australica_Contig_1008:7413..74791682586741.5260372-CDS-C-australica_Contig_1008:7413..7479Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 7414..7479 +
1682586741.5337923-CDS-C-australica_Contig_1008:7691..77361682586741.5337923-CDS-C-australica_Contig_1008:7691..7736Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 7692..7736 +
1682586741.5415866-CDS-C-australica_Contig_1008:7948..80231682586741.5415866-CDS-C-australica_Contig_1008:7948..8023Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 7949..8023 +
1682586741.5492449-CDS-C-australica_Contig_1008:8164..82381682586741.5492449-CDS-C-australica_Contig_1008:8164..8238Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 8165..8238 +
1682586741.5569968-CDS-C-australica_Contig_1008:8447..85061682586741.5569968-CDS-C-australica_Contig_1008:8447..8506Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 8448..8506 +
1682586741.5647435-CDS-C-australica_Contig_1008:8673..87461682586741.5647435-CDS-C-australica_Contig_1008:8673..8746Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 8674..8746 +
1682586741.572355-CDS-C-australica_Contig_1008:8939..90041682586741.572355-CDS-C-australica_Contig_1008:8939..9004Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 8940..9004 +
1682586741.5798419-CDS-C-australica_Contig_1008:9077..91811682586741.5798419-CDS-C-australica_Contig_1008:9077..9181Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1008 9078..9181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1008.2.1

>prot_C-australica_Contig_1008.2.1 ID=prot_C-australica_Contig_1008.2.1|Name=mRNA_C-australica_Contig_1008.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=306bp
MGVLSIQADETALSLFRRCNTVPFSTGISFLDGAGIVAGDVVEVYGPSPS
GKSELLLNVVLQTVLPKEMGGRASRAVCVDLDGNLSVLRIEQMLRERVGA
SACFRAGTMPIPDVALPAEVDPGSPEGRVTSVMLQCMQRIKFVSCQNHLQ
LIAAMEVLHYESAQEATLVVAIDSLGSLVGKSKLSDSALVLQNAALRATA
RLASERSVVVMAAKPALFANLGWGQGMGNRSGSKMEHWEYMPSAWQKVVS
HRVMLQRVPDQGEGQGFTLFNACVVQPHEGRAAEALVMSADPTRWLVSDR
GVHNA*
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mRNA from alignment at C-australica_Contig_1008:6702..9292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1008.2.1 ID=mRNA_C-australica_Contig_1008.2.1|Name=mRNA_C-australica_Contig_1008.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2591bp|location=Sequence derived from alignment at C-australica_Contig_1008:6702..9292+ (Chrysoparadoxa australica CS_1217)
CAAAGTCAGGGGTCATGGGGATGCGGGGTGGTGGGGTGGTCAGGGCTTGG CTCAATTGATCTCTCAGCTTCTTGGTTTGTTGCGAAAGAAGGCAAATGGG TGTGCTGTCTATCCAAGCCGATGAGACAGCCCTCTCGCTCTTCCGGAGAT GCAACACTGTACCCTTTTCGACAGGCATCAGCTTCCTTGATGGTGCAGGG ATCGTCGCTGGGGATGTGGTATGAGATTTGCTATGCTGCACCAGTCCTCT CTCCAACTCCTGATATTCTGCTGCACGCTCCCTCAAGGTGGAAGTGTATG GTCCCAGTCCTTCGGGCAAGAGCGAGCTGCTGCTGAACGTAGTGCTGCAA ACGGTGCTTCCCAAGGAAATGGGGGGGAGAGCCTCGAGAGCCGTCTGCGT TGACCTAGGTGGAGCACCAACCATGCCCCCTACCCCACCTCACACTTCTA TACCCCTAATGCAGTGACTTGGCGTCTCAACACCCGCTCAGATGGCAACC TGAGCGTGTTACGCATAGAGCAGATGCTGCGCGAGAGGGTGGGTGCAAGC GCGTGCTTCAGGGCAGGTACCATGCCCATTCCAGATGTTGCGCTGCCTGC AGAGGTAAGGGGCAGGAACCTCTCCGGCAAGCAAGCGGCTGCATGAACTC GAGTTGTCACAAGCAGTCTTGATTGTCAACCCCTCACCCTCGTCCCTCAC CCTAACCTGCAGGTGGATCCTGGGAGTCCAGAAGGTAGGGTGACTAGTGT GATGTTGCAGTGCATGCAGCGCATCAAGGTGAGTAGTTTGTTGGCCGAGT TGTACTGGGCTGGCCTCTAGGCTTTTTTACCTCGTATCTTTATGAAGGGC GCGGTAGTTGAGCAGCTGCAGCAAAGTTTGACCTCGATGCAGATGATGAA ATTTGAGGCTCATTGAGGAGGGATTGGATTTGAGTTAGATGATGGGGAGT TCACCACCTTTAATACCAAACACCTGCTCTTTTGCTCTAGTTTGTGTCAT GCCAGAATCATCTGCAGCTTATTGCAGCTATGGAGGTATGCCAGGGCCTG GAACCAACCCTTAATACCTCATTCCCTCACCCCTCATTTGAACCTCCAAG CTTTGCATGACGCTGCTGAGCTGAGGAGTCTCGTCCAGAAGCCTCTTCAC ACCTCATCCAGTCACTCTCTTTTTTCACTCGCTGACATGGTAGGAGCCCC CCCCAGAGCTTGCTGGCCACTTAAAACCTAATCAGTAGCCCACTCAGGTT CTCCACTACGAATCGGCCCAGGAAGCAACCCTGGTGGTTGCCATTGACAG CTTGGGGTCACTTGTTGGGAAGGTCAGTGACCTGCACTAACGGTAGTGGT GCAAGTCACTGACAACAGCCAGCCGTGTTCGCTGCGCATCCAAAGCCACA GTGAACGAAAGGACAGGGTCCTCCCTCTCCCTCCTGACTGGCTGCTCTTC CTCGTCCCGCCAGAGCAAGCTGTCTGACTCGGCGCTGGTGCTGCAGAACG CAGCGCTCAGGGCGACAGCACGCCTGGCCAGCGAGAGGTAACTTATGACC ATATGCCTATGGAGCTGACCTGACCTGACTTGAGCTTGCCAGGAAGCCTC CGTATACTAATGCTGTCAGAAGCATGCTGTGGCCGTGTCTGAATGAGTTT CACAGCTTCATGAGCTGGCAGCCATCATTTGTATTAAAAATCAGGGCGCC CTTTTGCTGTTGCCAATTCGCTCTCTCAGCTCAACCCCTCCCACAGGTCG GTGGTGGTGATGGCTGCCAAGCCAGCTCTCTTTGCCAACTTAGGCTGGGG CCAAGGTGACAGACCTTCAACTTCAACCAGCCTGACCAGCCTGACTTGAT GCAACATAGCTGGACCATCCCTCATCATGACCAGTCTCATGTCGCGAAAG GATCTCTAAGTGATTTATTCTAACTCTTCACGCCTGAGCTGTGCCGTTGG CTGACTGTGCACTGATCATTAGGGATGGGCAACAGATCCGGCAGCAAGAT GGAGCATTGGGAGTACATGCCATCTGCATGGCAAAAGGTTGTGAGGTGAG TGATGCAGCTCAGCATGATGGAAGTGACTTAAACTTAGATAGACCTGCTA CAGCTCAGCCCCCCCTCGAGCTCCCCCTGCATTTCTTATCACATCAGCCT CCTATGCCGTTTTGGCTTCTACTTGTTGCTTTGGTTCACCAACTACAACC ACCCTTGCACCCTTGCCTTGCCCTCCTGGCACCCACAGCCACAGGGTTAT GCTCCAGAGGGTGCCTGACCAGGGAGAGGGCCAGGGTTTCACCCTGTTCA ATGGTGGGTGCTCTCCCTCCTCCCTCCCTCGCTGAGCTGCGCTGAGCTGA CCAGGTTGATCTCTCTGCCATGGCAGCGTGCGTGGTGCAGCCTCACGAGG GCAGGGCGGCAGAAGCACTGGTCATGTCAGCCGACCCGACGAGGTGGCTG GTGAGTGATAGAGGCGTGCATAACGCTTGATGAGGTGGGAGATGCTATGA GCATTTGTTAAAGCTTCAGCCGCTCACCCTTGCCACACTGCTATAAGTTC CCAAATGACCCCAGCTGTGGGTTAGAGGCTTGTAATGAATA
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Coding sequence (CDS) from alignment at C-australica_Contig_1008:6702..9292+

>mRNA_C-australica_Contig_1008.2.1 ID=mRNA_C-australica_Contig_1008.2.1|Name=mRNA_C-australica_Contig_1008.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=918bp|location=Sequence derived from alignment at C-australica_Contig_1008:6702..9292+ (Chrysoparadoxa australica CS_1217)
ATGGGTGTGCTGTCTATCCAAGCCGATGAGACAGCCCTCTCGCTCTTCCG
GAGATGCAACACTGTACCCTTTTCGACAGGCATCAGCTTCCTTGATGGTG
CAGGGATCGTCGCTGGGGATGTGGTGGAAGTGTATGGTCCCAGTCCTTCG
GGCAAGAGCGAGCTGCTGCTGAACGTAGTGCTGCAAACGGTGCTTCCCAA
GGAAATGGGGGGGAGAGCCTCGAGAGCCGTCTGCGTTGACCTAGATGGCA
ACCTGAGCGTGTTACGCATAGAGCAGATGCTGCGCGAGAGGGTGGGTGCA
AGCGCGTGCTTCAGGGCAGGTACCATGCCCATTCCAGATGTTGCGCTGCC
TGCAGAGGTGGATCCTGGGAGTCCAGAAGGTAGGGTGACTAGTGTGATGT
TGCAGTGCATGCAGCGCATCAAGTTTGTGTCATGCCAGAATCATCTGCAG
CTTATTGCAGCTATGGAGGTTCTCCACTACGAATCGGCCCAGGAAGCAAC
CCTGGTGGTTGCCATTGACAGCTTGGGGTCACTTGTTGGGAAGAGCAAGC
TGTCTGACTCGGCGCTGGTGCTGCAGAACGCAGCGCTCAGGGCGACAGCA
CGCCTGGCCAGCGAGAGGTCGGTGGTGGTGATGGCTGCCAAGCCAGCTCT
CTTTGCCAACTTAGGCTGGGGCCAAGGGATGGGCAACAGATCCGGCAGCA
AGATGGAGCATTGGGAGTACATGCCATCTGCATGGCAAAAGGTTGTGAGC
CACAGGGTTATGCTCCAGAGGGTGCCTGACCAGGGAGAGGGCCAGGGTTT
CACCCTGTTCAATGCGTGCGTGGTGCAGCCTCACGAGGGCAGGGCGGCAG
AAGCACTGGTCATGTCAGCCGACCCGACGAGGTGGCTGGTGAGTGATAGA
GGCGTGCATAACGCTTGA
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