mRNA_C-australica_Contig_1004.10.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1004.10.1
Unique NamemRNA_C-australica_Contig_1004.10.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1004contigC-australica_Contig_1004:15997..16828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size610
Hectar predicted targeting categoryother localisation
Exons4
Cds size306
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1004.10.1prot_C-australica_Contig_1004.10.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1004 16175..16629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.1960058-UTR-C-australica_Contig_1004:15996..161741682586738.1960058-UTR-C-australica_Contig_1004:15996..16174Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 15997..16174 -
1682586738.2383935-UTR-C-australica_Contig_1004:16629..166951682586738.2383935-UTR-C-australica_Contig_1004:16629..16695Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 16630..16695 -
1682586738.2540503-UTR-C-australica_Contig_1004:16768..168281682586738.2540503-UTR-C-australica_Contig_1004:16768..16828Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 16769..16828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.2072136-CDS-C-australica_Contig_1004:16174..163001682586738.2072136-CDS-C-australica_Contig_1004:16174..16300Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 16175..16300 -
1682586738.2168114-CDS-C-australica_Contig_1004:16374..164771682586738.2168114-CDS-C-australica_Contig_1004:16374..16477Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 16375..16477 -
1682586738.2262945-CDS-C-australica_Contig_1004:16552..166291682586738.2262945-CDS-C-australica_Contig_1004:16552..16629Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 16553..16629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1004.10.1

>prot_C-australica_Contig_1004.10.1 ID=prot_C-australica_Contig_1004.10.1|Name=mRNA_C-australica_Contig_1004.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=102bp
MRRRKRRRQPLLASSRPGVSSGTGTGTGLPGLSATATNGATTTSRPGSPT
TPVTSGANTRTPTSPTAAVVVLPSALPCTRGLTGRAREFGLQIRGMRSGF
E*
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mRNA from alignment at C-australica_Contig_1004:15997..16828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1004.10.1 ID=mRNA_C-australica_Contig_1004.10.1|Name=mRNA_C-australica_Contig_1004.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=832bp|location=Sequence derived from alignment at C-australica_Contig_1004:15997..16828- (Chrysoparadoxa australica CS_1217)
ACAGCCAGAAGCAGGCCTGGATCACCGACTACCCCGGTGACTACAGGTGC
CAGTACAAGGGTAAGTCCACGGTGTGCATTGACTTGCCACTAGGAGCTGC
GGAGTGTTTCTTACGGCTTGTGCCTCTCCTCAGACCCAAACTTCTCCCAC
TGCTGCGGTGGTGGTGGTCCCCAGTGCGCTCCCATGTACCGCAAGCTGGA
TGAGGAGGAGAAAGAGGAGGAGACAGCCACTGTTGGCGAGCTCGAGACCA
GGCGTTTCCTCGGGGACTGGGACAGGGTAAGCTGGCCACCGATCTTCTCA
CAGGTCGCGAAATCTCTCTCTGACTTGCCACCTTTCTCTTGTCACTCTCA
GAACTGGCCTGCCTGGGTTGAGTGCGACAGCGACCAATGGTGCAACGACA
ACAAGCAGGCCTGGATCACCGACTACCCCGGTGACTTCAGGTGCCAATAC
AAGGGTGAGTCTGCTGTGGCCCTCCCCTTGCTTCACCTTGAAACCTCTCC
TAAAACCTTTTCTCTCCCCCTCTCACAGACCCCTACTTCTCCCACTGCTG
CGGTGGTGGTGCTCCCGAGTGCGCTCCCATGTACTAGAGGACTAACTGGG
AGGGCTAGAGAATTTGGTTTACAAATAAGGGGCATGCGCAGCGGGTTCGA
GTGAGCGACACGCACGCATGCCTTCGGGGGCATTGTTCGAGTAGTTCGAT
ATCATTTCAAGCAGCTCGGTGCATTAGGCGCGTCGGGCATTTTGGCCACT
CCTGGTCTTATGTATTTTTATGTTTGTATGGGAGAAATCAATCATGGATA
AATCAACGATGGATTCAGATCCTTACACCATT
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Coding sequence (CDS) from alignment at C-australica_Contig_1004:15997..16828-

>mRNA_C-australica_Contig_1004.10.1 ID=mRNA_C-australica_Contig_1004.10.1|Name=mRNA_C-australica_Contig_1004.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=306bp|location=Sequence derived from alignment at C-australica_Contig_1004:15997..16828- (Chrysoparadoxa australica CS_1217)
ATGAGGAGGAGAAAGAGGAGGAGACAGCCACTGTTGGCGAGCTCGAGACC
AGGCGTTTCCTCGGGGACTGGGACAGGAACTGGCCTGCCTGGGTTGAGTG
CGACAGCGACCAATGGTGCAACGACAACAAGCAGGCCTGGATCACCGACT
ACCCCGGTGACTTCAGGTGCCAATACAAGGACCCCTACTTCTCCCACTGC
TGCGGTGGTGGTGCTCCCGAGTGCGCTCCCATGTACTAGAGGACTAACTG
GGAGGGCTAGAGAATTTGGTTTACAAATAAGGGGCATGCGCAGCGGGTTC
GAGTGA
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