mRNA_C-australica_Contig_1002.2.4 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1002.2.4
Unique NamemRNA_C-australica_Contig_1002.2.4
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 7.330e-100
Identity = 157/243 (64.61%), Postives = 186/243 (76.54%), Query Frame = 3
Query:  210 RPPLTVL-GRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPT--EGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRK-------KCHQI 908
            +PPL V+ GRAGPTDA P+YD  D+ P +  LLG FRSKLA+E GG       GYDGLM+MI  LN KF S+ +TQ+ASRR L++LFPSWLP +FAVMFSKPFP FS+RLNAWVT  ASQWLMGPS+LN++E  +DG+ G G GLLV R     CRFLE +GCASVC+N CK+PTEEFFAKDMGL LEM P+YEDFSCQFSF K P  R+ D+ F VACFEQCPS+G+LR+       +CHQI
Sbjct:   76 KPPLKVIRGRAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIE-IDDGTVGVGHGLLVER-----CRFLEAAGCASVCMNTCKVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQI 310          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA)

HSP 1 Score: 254 bits (648), Expect = 2.650e-79
Identity = 126/205 (61.46%), Postives = 152/205 (74.15%), Query Frame = 3
Query:  300 LLGYFRSKLADECGGQSPTEGYDGLMEMILALNSK--FMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKKCHQI 908
            LLG FR KLA E        GY GL+EMI +LN    + +  +TQQA+R+ LQ+LFP WLPGAFAVMFSKPFP FS R+NAWVT  ASQWLMGPS++N+VE  + G  G G GLLV R     CR+LE +GCASVC+N CKIPT+EFF KDMGL L+M PDY+DFSCQFSFGK P   E D+VF VACFEQCP++ S ++ CH++
Sbjct:    2 LLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVE-IDGGQMGVGHGLLVKR-----CRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKV 200          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE)

HSP 1 Score: 251 bits (642), Expect = 2.100e-77
Identity = 126/252 (50.00%), Postives = 159/252 (63.10%), Query Frame = 3
Query:  156 SAPRQARTRVVMSAEQ-PRRPPLTVLGRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKKCHQI 908
            SAP  +R+ +V      P  P    L +AGP DA P Y   DS P N  ++  FR K+ +  G  S   GYD ++++   LN+KF +  ETQ+A+R  L ALFPSWLPGAF VMFS+P P FS RLNA  T    QWLMGP ++N+VE  + G  G G G+LV R     CR+LE +GCASVC+N+CK+PT+ FF KDMGL L M P+Y+DFSCQFSFGK P+P + D  F   CF QCPS+ S    C  I
Sbjct:   23 SAPCSSRSTIVTRVSSAPGAPSPANLRQAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKLSGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVE-IDGGKVGTGHGVLVER-----CRYLEQAGCASVCINSCKVPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPSKRSRTPVCGGI 268          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO)

HSP 1 Score: 247 bits (631), Expect = 6.140e-76
Identity = 121/214 (56.54%), Postives = 146/214 (68.22%), Query Frame = 3
Query:  237 AGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ 878
            AGPTD  PSY   DS P N  ++  FR K+    G  S   GYD ++++   LNSKF +  ETQ+A+R  L ALFPSWLPGAF VMFSKPFP FS RLNA  T    QWLMGP ++N+VE  + G  GKG G+LV R     CR+LE +GCASVC+N+CKIPT+ FF+KDMGL L M P+YEDFSCQF+FGK P   E D+ F   CF QCPS+
Sbjct:   42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELYGYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVE-IDGGIVGKGHGVLVER-----CRYLEQAGCASVCINSCKIPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPSK 249          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC)

HSP 1 Score: 243 bits (619), Expect = 1.320e-74
Identity = 118/217 (54.38%), Postives = 147/217 (67.74%), Query Frame = 3
Query:  228 LGRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ 878
              +AGP    PSY++ DS P N A++  FR K+    G  S  EGYD ++++   LNSK  +  +TQ  +R+ L +LFPSWLP AF VMFSKP P  S +LNAWVT    QWLMGP ++N+VE  + G  G GQG+LV R     CR+LE +GCASVCLN+CKIPT+EFFAKDMGL L M P+YEDFSCQFSFG  P+P   D+ F   CF QCPS+
Sbjct:    5 FSKAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSDKEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVE-LDGGRIGSGQGVLVER-----CRYLEETGCASVCLNSCKIPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSK 215          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO)

HSP 1 Score: 243 bits (619), Expect = 1.500e-74
Identity = 112/222 (50.45%), Postives = 152/222 (68.47%), Query Frame = 3
Query:  234 RAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKKC 899
            +AGP +  P Y A DS P N  ++  FR K+    G  S   GY+ ++++   LN+ +    + Q  +R+ L++LFPSWLPGAFAVMFSKP P FS +LNA  T    QWLMGP ++N+VE  +DGS G+G G+LV R     CR+LE +GCAS+C+N+CK+PT+EFF KDMGL L M P+YEDFSCQF+FGKAP P++ D+ F+  CF+QCPS+ +    C
Sbjct:    1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQLSGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVE-LDDGSVGQGMGVLVER-----CRYLEQAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAARYSDC 216          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO)

HSP 1 Score: 241 bits (616), Expect = 2.460e-73
Identity = 120/255 (47.06%), Postives = 156/255 (61.18%), Query Frame = 3
Query:  156 SAPRQARTRVVMSAEQPRRPPLTVLGRAGPTDAP--------------PSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ 878
            SAPR+           PRRP LT+   AGP D                PSY   D+ P N  ++  FR K+ +  G  S  +GY  ++++   LN ++ +  +TQ A+RR L +LFPSWLPGAF VMFS P P FS RLNA  T    QWLMGP ++N+VE  + G  G G G+LV R     CR+LE +GCAS+C+N+CK+PT+EFF KDMGL L M P+YEDFSCQF+FGK P P+  D+ F+  CF QCPS+
Sbjct:   24 SAPRRGAASSRPCPRAPRRPRLTLARAAGPLDGAAATQLRQAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQLQGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVE-LDSGEVGSGMGVLVER-----CRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPSK 272          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A835YAW5_9CHLO (D27-like_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YAW5_9CHLO)

HSP 1 Score: 235 bits (600), Expect = 3.900e-71
Identity = 121/245 (49.39%), Postives = 162/245 (66.12%), Query Frame = 3
Query:  186 VMSAEQPRRPPLTVLGRAGPTDAP-PSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ---GSLRKKCHQI 908
            + S E P  PP T   +AGP D P PSY+  D    N  ++  FR K+ D  G  S  +GY G++++   LN+K+ + V+TQ+A+R  L+ALFPSWL  AF ++F+KP P FS RLNA  T    QWLMGP ++N+VE  +DG+ GKGQG+ V R     CR+LE +GCASVC+N+CK+PT+ FFA+DMG+ L M P+Y+DFSCQFSFGKAP   + D  F  ACF QCPS+   G++   C  I
Sbjct:   37 ISSVEAPT-PPATR--QAGPADVPAPSYEEIDRKAMNVLVMSLFRRKMVDALGVDSQQQGYAGIVDLTRKLNNKYRNPVDTQEATRAILKALFPSWLLPAFRMLFAKPMPDFSCRLNAVATALTCQWLMGPCKVNDVE-FDDGTVGKGQGVFVER-----CRYLEETGCASVCINSCKVPTQTFFARDMGIPLTMTPNYDDFSCQFSFGKAPPSVKLDGAFTTACFNQCPSKKARGAVATACGGI 272          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A2J8AIV6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO)

HSP 1 Score: 238 bits (607), Expect = 9.470e-71
Identity = 112/217 (51.61%), Postives = 151/217 (69.59%), Query Frame = 3
Query:  249 DAP-PSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGLMEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQGSLRKK 896
            D+P PSY A D  P N  ++  FR K+    G  SP  GYD ++++   LN+KF +  ETQ+A+R  L ALFPSWLPGAF VMF++P P  S R+NA  T    QWLMGP ++N+VE T+DG+ G+G G+LV R     CR+LE +GCA+VC+N+CK+PT+ FFAKDMGL L M P+Y+DFSCQF+FGK P P  +D+ +  +CF QCPS+ + R +
Sbjct:  168 DSPTPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPLSGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVE-TDDGTVGEGHGVLVER-----CRYLEQAGCAAVCINSCKVPTQSFFAKDMGLALTMTPNYDDFSCQFAFGKTPLPVSADEAYTTSCFAQCPSKKARRNQ 378          
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Match: A0A4D9DA54_9STRA (D27-like_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA54_9STRA)

HSP 1 Score: 233 bits (594), Expect = 3.370e-70
Identity = 122/236 (51.69%), Postives = 156/236 (66.10%), Query Frame = 3
Query:  222 TVLGRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQ-SPTEGYDGLMEMILALNSKFMS--QVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSNRLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFLEHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEPRESDQVFNVACFEQCPSQ----GSLRKKCHQI 908
            T L R GP DAPP Y      PF+  L  +FR+KL  + GG  + ++ + GL+E+I  LN+ F +  +V TQ+A++  L++LFPSWLP AFAVMFSKPFP FS R+NA +T   + WLMG SE+ +V+ T  GS G GQGLLV R     CR+LE +GCAS+C+N CKIPT+ FF +DMGL L M PDY+DFSC F+FG  P P   D+   VACF QCP+     G L   CHQI
Sbjct:   53 TRLQRRGPIDAPPEY-GMQRRPFDGLLYAFFRAKLVQQLGGSDTASKDFAGLIELIRKLNTHFPASGKVGTQKAAQNILRSLFPSWLPAAFAVMFSKPFPAFSARMNAIITGLTTYWLMGESEIIDVDVTG-GSVGVGQGLLVKR-----CRYLEEAGCASICVNTCKIPTQNFFCQDMGLPLTMTPDYDDFSCTFAFGLTPPPEVDDEAMRVACFSQCPTAKAPTGEL-SNCHQI 280          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1002.2.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW1_ECTSI7.330e-10064.61D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A835ZDY9_9STRA2.650e-7961.46D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
A8IC34_CHLRE2.100e-7750.00Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
A0A8J4BT63_9CHLO6.140e-7656.54D27-like_C domain-containing protein n=2 Tax=Volvo... [more]
I0YX40_COCSC1.320e-7454.38D27-like_C domain-containing protein n=1 Tax=Cocco... [more]
A0A7J7QQS2_9CHLO1.500e-7450.45D27-like_C domain-containing protein n=1 Tax=Scene... [more]
A0A0D2MYG1_9CHLO2.460e-7347.06D27-like_C domain-containing protein n=1 Tax=Monor... [more]
A0A835YAW5_9CHLO3.900e-7149.39D27-like_C domain-containing protein n=1 Tax=Edaph... [more]
A0A2J8AIV6_9CHLO9.470e-7151.61D27-like_C domain-containing protein n=1 Tax=Tetra... [more]
A0A4D9DA54_9STRA3.370e-7051.69D27-like_C domain-containing protein n=1 Tax=Nanno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1002contigC-australica_Contig_1002:2176..4360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEW1
PFAMsDUF4033
Model size1367
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons7
Evalue2.17e-103
EggNOG OGs28YJ7@1|root,2R5D2@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-21_005770.1
DescriptionDomain of unknown function (DUF4033)
Cds size849
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1002.2.4prot_C-australica_Contig_1002.2.4Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1002 2620..4286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586736.930547-UTR-C-australica_Contig_1002:2175..26191682586736.930547-UTR-C-australica_Contig_1002:2175..2619Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1002 2176..2619 -
1682586737.0341973-UTR-C-australica_Contig_1002:4286..43601682586737.0341973-UTR-C-australica_Contig_1002:4286..4360Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1002 4287..4360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586736.9477851-CDS-C-australica_Contig_1002:2619..27601682586736.9477851-CDS-C-australica_Contig_1002:2619..2760Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1002 2620..2760 -
1682586736.965469-CDS-C-australica_Contig_1002:2996..30531682586736.965469-CDS-C-australica_Contig_1002:2996..3053Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1002 2997..3053 -
1682586736.9770098-CDS-C-australica_Contig_1002:3170..32491682586736.9770098-CDS-C-australica_Contig_1002:3170..3249Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1002 3171..3249 -
1682586736.9868846-CDS-C-australica_Contig_1002:3380..34451682586736.9868846-CDS-C-australica_Contig_1002:3380..3445Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1002 3381..3445 -
1682586736.9962325-CDS-C-australica_Contig_1002:3644..39851682586736.9962325-CDS-C-australica_Contig_1002:3644..3985Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1002 3645..3985 -
1682586737.006229-CDS-C-australica_Contig_1002:4060..41301682586737.006229-CDS-C-australica_Contig_1002:4060..4130Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1002 4061..4130 -
1682586737.016113-CDS-C-australica_Contig_1002:4190..42861682586737.016113-CDS-C-australica_Contig_1002:4190..4286Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1002 4191..4286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1002.2.4

>prot_C-australica_Contig_1002.2.4 ID=prot_C-australica_Contig_1002.2.4|Name=mRNA_C-australica_Contig_1002.2.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=283bp
MKVAALVGCAMFMQSCSAWVGLPGPHLSAPRQARTRVVMSAEQPRRPPLT
VLGRAGPTDAPPSYDAADSNPFNAALLGYFRSKLADECGGQSPTEGYDGL
MEMILALNSKFMSQVETQQASRRTLQALFPSWLPGAFAVMFSKPFPGFSN
RLNAWVTWWASQWLMGPSELNNVEETNDGSSGKGQGLLVTRPPFDSCRFL
EHSGCASVCLNNCKIPTEEFFAKDMGLLLEMKPDYEDFSCQFSFGKAPEP
RESDQVFNVACFEQCPSQGSLRKKCHQIVASK*
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mRNA from alignment at C-australica_Contig_1002:2176..4360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1002.2.4 ID=mRNA_C-australica_Contig_1002.2.4|Name=mRNA_C-australica_Contig_1002.2.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2185bp|location=Sequence derived from alignment at C-australica_Contig_1002:2176..4360- (Chrysoparadoxa australica CS_1217)
CCCACCCCCGCGCCCTTAGCTATTGAGCTATCCTCCCACTTGCCGCTCTG TGCTCTTCTCTCGTTCCCTTCCCCATGAAGGTCGCAGCTCTTGTAGGTTG CGCTATGTTCATGCAATCATGCTCTGCTTGGGTTGGGCTCCCTGGCCCTC ATCTGTCAGCTCCTCGTCAAGTAAGCCCGCCTGCCCACAAAGCTTTCCTT ATGCAGCACAGACTGAGTCCCATTGCCCAGGCGAGGACAAGGGTAGTGAT GAGCGCAGAGCAGCCTCGAAGACCGCCTCTCACAGTGCTGGGGCGAGCAG GTAAGAGGTTCCTTGATGCATGAGTTGCTGCAGAAGAGCGTTCTCTCACA CCCCTCTCCACCTCCTGCTGCATAGGCCCTACTGATGCCCCTCCCTCCTA CGACGCGGCCGACAGCAACCCTTTCAACGCAGCGCTCCTTGGCTACTTCC GCAGCAAACTTGCTGATGAGTGCGGCGGACAGAGCCCCACTGAGGGATAC GATGGCCTGATGGAAATGATCTTGGCGCTGAACAGCAAGTTTATGTCTCA AGTTGAGACCCAACAAGCGTCACGTCGGACGCTTCAGGCTCTCTTTCCCA GTTGGCTCCCAGGAGCCTTTGCTGTAATGTTTTCCAAGCCGTTCCCTGGC TTCAGCAACCGCCTTAATGCCTGGGTTACTTGGTGGGCTAGCCAATGGTT GATGGGGCCAAGCGAGGTATTGTAAGCACTAAAGCAAAACTGAGTTAGTT GAGTGGTCCTTGGTTGTGTTGTGAAGAATCAAAGCCTTTAGAAACCTTTA AGCCTGAATTTCTCCAAGACGTGGGCAAGCAGGAAGTGGCACCACGTCAT TATGCGCGCGCGCAGCACGTAATACTCTGCGTTATGACACTGACCCTCCG CTGTCTGACTGATAGCTGAACAATGTGGAAGAAACTAATGACGGAAGCAG TGGCAAGGGCCAAGGGCTTCTAGTCACGCGGTGAAAGTCAACCCCATCCC TCTCTCCTGCGCCATTCCCATGCTCTCTCTTTCGCTTCCTCACTGATAGT GAGCTCTCGCCTCCCTTCTGGCCCGACCTGCATGACAAACCCTTGATGGA CTAACCGTAAGTCCACCGTTTGACAGTTGTCGATTCCTGGAGCACTCAGG TTGTGCTAGCGTTTGCCTAAACAACTGCAAGATTCCTACGGTATGCAGCT TTACGTAACCAAGCAAATAGTGACCTGAAGTGACAGTCCCTTAACCCGGA TGCTTGCACCACTTTTGACACCCTCTGACTGGTCCAACACGGCACCACTT TTACCAGGAAGAATTCTTTGCCAAGGATATGGGGTTACTATTAGAGATGA AGCCTGACTATGAGGTAGGGCTAGCTCGACAAGTTATCACTGGTACCCCC CTAATGCGAGCACAGGCCCCCTAACCCATTCACAAGCTGACATCATACAC AGCGAAAAAACGATAGGCTCTTCTTATCCTCCAGGCCCCACACCTCGCCA CGTCCTGCTGGGTACCTCATTCATTCTCCTCACTCCCTAGCCTTCTCTCA ATCACAATCACGCCCCCTCACATCGTCCCATCCCCTCCCACCTCTGGAAG GACTTCTCCTGTCAGTTCTCATTCGGCAAGGCCCCAGAGCCGCGCGAGAG CGACCAGGTCTTCAACGTGGCCTGCTTCGAGCAGTGCCCCAGCCAGGGCA GCTTGAGGAAGAAGTGCCACCAGATCGTTGCAAGCAAGTGAGTAGTGACC ACTCCAAGGTGGCTTCAATTGCCACCGCAGGCAGGTTGGTTGCTAGTTCC CGTGACTGCAAGGTCAAGAGTAGGAAATTTCTCAGGACTGAGGAAATTTC TCAAGAAGCTCAAGAAAGTTCCTCAAGGTCAAGACTGATGCTGTGGGCTC CGCAACTGGGTGGGCCTTCCACAAGAGTGTCGAGCTACTGGACGAGGCAC CTCAGGAGTTCCAGGACTATACACATCGATTCAGCAGGACCTAATTGGTA TGGACTTCCCAAAGCTTGATGCTCCCGTGCCCAGCTCCATATTCAAGGGA GCATCAAGTGATGGTACGGCCATATCAATTAAGTCTGTTGAGTACAAAAG GATGGAGCAAGTGACTGAGAGACTCCAACAGAGGGTCTAATGCACATTTT GCCCACTAGCTTTCGCTGATTCAGCATAACCTCCA
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Coding sequence (CDS) from alignment at C-australica_Contig_1002:2176..4360-

>mRNA_C-australica_Contig_1002.2.4 ID=mRNA_C-australica_Contig_1002.2.4|Name=mRNA_C-australica_Contig_1002.2.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=849bp|location=Sequence derived from alignment at C-australica_Contig_1002:2176..4360- (Chrysoparadoxa australica CS_1217)
ATGAAGGTCGCAGCTCTTGTAGGTTGCGCTATGTTCATGCAATCATGCTC
TGCTTGGGTTGGGCTCCCTGGCCCTCATCTGTCAGCTCCTCGTCAAGCGA
GGACAAGGGTAGTGATGAGCGCAGAGCAGCCTCGAAGACCGCCTCTCACA
GTGCTGGGGCGAGCAGGCCCTACTGATGCCCCTCCCTCCTACGACGCGGC
CGACAGCAACCCTTTCAACGCAGCGCTCCTTGGCTACTTCCGCAGCAAAC
TTGCTGATGAGTGCGGCGGACAGAGCCCCACTGAGGGATACGATGGCCTG
ATGGAAATGATCTTGGCGCTGAACAGCAAGTTTATGTCTCAAGTTGAGAC
CCAACAAGCGTCACGTCGGACGCTTCAGGCTCTCTTTCCCAGTTGGCTCC
CAGGAGCCTTTGCTGTAATGTTTTCCAAGCCGTTCCCTGGCTTCAGCAAC
CGCCTTAATGCCTGGGTTACTTGGTGGGCTAGCCAATGGTTGATGGGGCC
AAGCGAGCTGAACAATGTGGAAGAAACTAATGACGGAAGCAGTGGCAAGG
GCCAAGGGCTTCTAGTCACGCGTCCACCGTTTGACAGTTGTCGATTCCTG
GAGCACTCAGGTTGTGCTAGCGTTTGCCTAAACAACTGCAAGATTCCTAC
GGAAGAATTCTTTGCCAAGGATATGGGGTTACTATTAGAGATGAAGCCTG
ACTATGAGGACTTCTCCTGTCAGTTCTCATTCGGCAAGGCCCCAGAGCCG
CGCGAGAGCGACCAGGTCTTCAACGTGGCCTGCTTCGAGCAGTGCCCCAG
CCAGGGCAGCTTGAGGAAGAAGTGCCACCAGATCGTTGCAAGCAAGTGA
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