mRNA_C-australica_Contig_10010.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10010.1.1
Unique NamemRNA_C-australica_Contig_10010.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: A0A2D6AXP6_9BACT (Acriflavin resistance protein n=3 Tax=Cytophagales TaxID=768507 RepID=A0A2D6AXP6_9BACT)

HSP 1 Score: 436 bits (1120), Expect = 7.630e-143
Identity = 224/281 (79.72%), Postives = 255/281 (90.75%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            + +N KAR F+VE  +IGNR G GLP+S+VLQ R+L++LKEVLPEF+ KA  S  F +VD++L+FNKPELGVRI+REKA+SMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQ+E++DRNEPLDLKSIY+K+ +G LVQ+DNLI  EERSTPPQL+HYNRFTSAT+SA+LA G +LG  ++EMDRIADEVLDDRFQTALSG S EFQ+SSGNLYFAF LAL+LIYLVLAAQFESFRDPL IMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL
Sbjct:  639 VAANTKARAFVVEPESIGNRRG-GLPVSFVLQARQLEDLKEVLPEFLEKANASPAFDFVDLNLKFNKPELGVRIDREKARSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQLERADRNEPLDLKSIYIKSGSGELVQMDNLISLEERSTPPQLYHYNRFTSATISASLANGYTLGMALQEMDRIADEVLDDRFQTALSGSSKEFQESSGNLYFAFALALLLIYLVLAAQFESFRDPLIIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 918          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: A0A654DWL2_9BACT (Multidrug efflux pump n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654DWL2_9BACT)

HSP 1 Score: 433 bits (1114), Expect = 5.940e-142
Identity = 225/281 (80.07%), Postives = 253/281 (90.04%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            +  N KAR FI E  +IG  FG G+P+S+V+Q R LD+LKEVLP F+AKA  +  FS+VD++L+FNKPE+GVRI+REKAQ+MGVSV+DIAQTLQLSLSGNRFGYFIMNGKQYYVIGQ+EKS+RNEPLDL+SIYVKA NG LVQLDNL+  EERSTPPQLFHYNRFTSATVSA LA G+SLGEG++EMD IA+EVLDDRFQTALSG SLEFQQS+ NLYFAF LALILIYLVLAAQFESFRDPL IMFTVPLALSGALL+LWYFNE+LNIFSQIGMIMLIGL
Sbjct:  639 VAKNTKARAFINEPESIGRSFG-GMPVSFVIQARNLDQLKEVLPAFLAKASANPHFSFVDLNLKFNKPEIGVRIDREKAQTMGVSVKDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQLEKSNRNEPLDLRSIYVKASNGELVQLDNLVTLEERSTPPQLFHYNRFTSATVSAKLAEGVSLGEGLKEMDLIAEEVLDDRFQTALSGTSLEFQQSASNLYFAFALALILIYLVLAAQFESFRDPLIIMFTVPLALSGALLSLWYFNESLNIFSQIGMIMLIGL 918          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: A0A3D9L3X4_MARFU (Multidrug efflux pump n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9L3X4_MARFU)

HSP 1 Score: 431 bits (1108), Expect = 4.620e-141
Identity = 223/281 (79.36%), Postives = 252/281 (89.68%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            + +N KAR F+ E  +IG  FG G+P+S+V+Q R L++LKEVLP F+ KA  ++ FS+VD++L+FNKPELGVRI+REKAQSMGVSVRDIAQTLQLSLSG RFGYFIMNGKQYYVIGQ+ + DR+EPLDLKSIYVK+K+G LVQLDNL+  EERSTPPQLFHYNRFTSATVSA LA G+SLG+G+E+M+ IADEVLDDRFQTALSG SLEFQQSS NLYFAF LALILIYLVLAAQFESFRDPL IMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL
Sbjct:  639 VAANTKARAFVSEPESIGRSFG-GMPVSFVIQARNLEQLKEVLPGFLEKANGNEAFSFVDLNLKFNKPELGVRIDREKAQSMGVSVRDIAQTLQLSLSGTRFGYFIMNGKQYYVIGQLAREDRDEPLDLKSIYVKSKSGDLVQLDNLLSLEERSTPPQLFHYNRFTSATVSARLAEGVSLGQGLEQMNLIADEVLDDRFQTALSGTSLEFQQSSSNLYFAFALALILIYLVLAAQFESFRDPLIIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 918          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: UPI0012BD0E5E (efflux RND transporter permease subunit n=3 Tax=Fulvivirga TaxID=396811 RepID=UPI0012BD0E5E)

HSP 1 Score: 380 bits (977), Expect = 1.110e-121
Identity = 192/281 (68.33%), Postives = 235/281 (83.63%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            I  N +AR F+ +  TIG+R G GLP+ +V+Q   L++LK VLPEF  KA+ S +F +VD+DL+FNKPEL V INR+KA+ +GVSVR++AQTLQL+LSG RFGYF+ +GKQYY+IGQVE+ +RN+PLDL+SIYVK   G +VQ+DNL+  EE+STPPQLF YNRF SAT SA+LAPG +LG G++EMDRIA EVLD  F TAL+G SLE+Q+S+ NLYFAFG ALILIYLVLAAQFESFRDPL IMFTVPLAL+G LL+LW+F ETLNIFSQIG+IMLIGL
Sbjct:  639 IAKNTRARAFVTQPQTIGDRRG-GLPVQFVIQAPNLEQLKNVLPEFQEKAQASSIFDFVDLDLKFNKPELNVTINRDKARDLGVSVRNVAQTLQLTLSGQRFGYFVKDGKQYYIIGQVERENRNDPLDLRSIYVKNDEGEIVQMDNLVTLEEKSTPPQLFRYNRFASATFSASLAPGYTLGAGLDEMDRIAAEVLDGSFSTALAGSSLEYQESANNLYFAFGFALILIYLVLAAQFESFRDPLIIMFTVPLALAGTLLSLWFFGETLNIFSQIGIIMLIGL 918          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: UPI0012BC6320 (efflux RND transporter permease subunit n=1 Tax=Fulvivirga aurantia TaxID=2529383 RepID=UPI0012BC6320)

HSP 1 Score: 377 bits (969), Expect = 1.700e-120
Identity = 192/281 (68.33%), Postives = 234/281 (83.27%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            +  N +AR F+ E  +IGNR G GLP+ YVLQ   L++LKEV+P FI +A  + VF +VDVDL+FNKPE+ + I+R+KA+ +GVSVR++AQTLQLSLSG RFGYFI +GKQY VIGQVE+ DR++PLDLKSIYV+  +GGL+Q+DNL+   E+STPPQL+ YNRF SAT+SA+L PG SLGEGI  MD +A +VLD  F TAL+G SLEFQQSSGNLYFAFG ALILIYLVL+AQFESFRDPL IMFTVPLAL+G LL+L++F ETLNIFSQIG+IMLIGL
Sbjct:  639 VSQNTRARAFVSEPQSIGNRRG-GLPVQYVLQAPNLEKLKEVIPSFIEEANATGVFGFVDVDLKFNKPEINIEIDRDKARDLGVSVRNVAQTLQLSLSGQRFGYFIKDGKQYQVIGQVERDDRDDPLDLKSIYVQNSDGGLIQMDNLVTLSEKSTPPQLYRYNRFASATISASLNPGYSLGEGINTMDAVAAKVLDGSFSTALAGNSLEFQQSSGNLYFAFGFALILIYLVLSAQFESFRDPLIIMFTVPLALAGTLLSLYFFGETLNIFSQIGIIMLIGL 918          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: UPI001923B449 (efflux RND transporter permease subunit n=1 Tax=Fulvivirga sediminis TaxID=2803949 RepID=UPI001923B449)

HSP 1 Score: 370 bits (951), Expect = 7.130e-118
Identity = 188/281 (66.90%), Postives = 237/281 (84.34%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            I  N +AR FI +  TIG+  G GLP+ YV+Q   +++LK+VLP F  +A++S+VF ++D+DL+FNKPEL V I+R+KA+ MGVSVR+IAQTLQLSLSG RFGYF+ +GKQY +IGQVE+ +RN+PLDLKSIYVK+ +G L+Q+DNL+   E+STPPQL+ YNRF SAT SA+LAPG SLG GIEEM+RIADE+LD  + T+LSG SLE+Q+S+ NLYFAFG ALILIYLVL+AQFESFRDPL IMFTVPLAL+GAL +LW F+++LNIFSQIG+IMLIGL
Sbjct:  637 IAKNTRARAFISQPQTIGDSRG-GLPVQYVVQANTVEQLKKVLPAFQERAQQSEVFDFIDLDLKFNKPELNVTIDRDKARDMGVSVRNIAQTLQLSLSGQRFGYFVKDGKQYQIIGQVERDNRNDPLDLKSIYVKSDDGQLIQMDNLVTLTEQSTPPQLYRYNRFASATFSASLAPGYSLGAGIEEMNRIADEILDSSYSTSLSGSSLEYQESASNLYFAFGFALILIYLVLSAQFESFRDPLIIMFTVPLALAGALGSLWLFDQSLNIFSQIGIIMLIGL 916          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: UPI001F35CF57 (efflux RND transporter permease subunit n=1 Tax=Fulvivirga sp. W9P-11 TaxID=2904246 RepID=UPI001F35CF57)

HSP 1 Score: 369 bits (948), Expect = 1.970e-117
Identity = 187/281 (66.55%), Postives = 233/281 (82.92%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            I  N +AR F+ +  TIG R G GLP+ YV+Q   LD+LK VLP+F  KA+ S +F +VD+DL+FNKPEL V I+R+KA+ +GVSVR+IAQTLQL+LSG RFGYF+ +GKQYY+IGQVE+ +RN+PLDLKSIYV++  G L+Q+DNL+   E STPPQL+ YNRF SAT SA+LAPG +LG GIEEM+RIADEVLD  + TAL+G SLE+Q+S+ NLYFAFG AL+LIYLVL+AQFESFRDPL IMFTVPLAL+GAL +LW + ++LNIFSQIG+IMLIGL
Sbjct:  637 IAKNTRARAFVSQPQTIGGR-GGGLPVQYVIQATTLDKLKAVLPQFREKAQASGIFDFVDLDLKFNKPELNVTIDRDKARDLGVSVRNIAQTLQLTLSGQRFGYFVKDGKQYYIIGQVERDNRNDPLDLKSIYVESDEGELIQMDNLVTLTEESTPPQLYRYNRFASATFSASLAPGYTLGAGIEEMNRIADEVLDGSYSTALAGSSLEYQESASNLYFAFGFALVLIYLVLSAQFESFRDPLIIMFTVPLALAGALGSLWIYGQSLNIFSQIGIIMLIGL 916          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: L8K1L6_9BACT (RND multidrug efflux transporter n=1 Tax=Fulvivirga imtechensis AK7 TaxID=1237149 RepID=L8K1L6_9BACT)

HSP 1 Score: 368 bits (944), Expect = 7.920e-117
Identity = 187/281 (66.55%), Postives = 234/281 (83.27%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            I  N +AR F+ +  TIG+R G GLP+ +V+Q   L++LKEVLPEF   A+ES VF +VD+DL+FNKPEL V I+REKA+++ VSVR+IAQTLQLSLSG RFGYF+ +GKQYY+IGQVE+ +RN+PLDL+SIYVK     ++Q+DNL+  +E+STPPQL+ YNRF SAT SA+L+PG +LG G++EM RI+DEVLD  F TAL+G SLE+Q+S+ NLYFAF  ALILIYLVL+AQFESFRDPL IMFTVPLAL+G LL+LW+F ETLNIFSQIG+IMLIGL
Sbjct:  639 IARNTRARAFVTQPQTIGDRRG-GLPVQFVIQAPNLEKLKEVLPEFQQIAQESKVFDFVDLDLKFNKPELNVTIDREKARNLKVSVRNIAQTLQLSLSGQRFGYFVKDGKQYYIIGQVERDNRNDPLDLRSIYVKNSEDDIIQMDNLVTLQEQSTPPQLYRYNRFASATFSASLSPGYTLGAGLDEMYRISDEVLDGSFSTALAGSSLEYQESANNLYFAFAFALILIYLVLSAQFESFRDPLIIMFTVPLALAGTLLSLWFFGETLNIFSQIGIIMLIGL 918          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: UPI00197A773A (efflux RND transporter permease subunit n=1 Tax=Fulvivirga lutea TaxID=2810512 RepID=UPI00197A773A)

HSP 1 Score: 367 bits (943), Expect = 1.110e-116
Identity = 188/281 (66.90%), Postives = 230/281 (81.85%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            +  N +AR F+ +  TIG+R G GLP+ YVLQ   LD+L EV+P F+ +A+ S VF +V VDL+FNKPE+ + I+REKA+ +GVSVR+IAQTLQLSLSG RFGYFI NGKQY +IGQVE+ DRN+PLDLKSIYV+  NG L+Q+DNL+   ER+TPPQL+ YNRF SAT+SA+L  G SLG+G+ +MD I+ +VLD    TAL+G SLEF+QSSGNLYFAFG ALILIYLVLAAQFESFRDPL IMFTVPLAL+G LL+L+ F ET+NIFSQIG+IMLIGL
Sbjct:  639 VAQNTRARAFVTQPQTIGDRRG-GLPVQYVLQAGTLDKLNEVIPAFLDEAQNSGVFDFVQVDLKFNKPEISIEIDREKARDLGVSVRNIAQTLQLSLSGQRFGYFIKNGKQYQIIGQVERQDRNDPLDLKSIYVQNDNGTLIQMDNLVTLTERTTPPQLYRYNRFASATISASLKEGYSLGDGLNKMDEISQKVLDGSVSTALAGTSLEFKQSSGNLYFAFGFALILIYLVLAAQFESFRDPLIIMFTVPLALAGTLLSLYLFGETMNIFSQIGIIMLIGL 918          
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Match: A0A553FQF5_9BACT (Efflux RND transporter permease subunit n=1 Tax=Fulvivirga sp. M361 TaxID=2594266 RepID=A0A553FQF5_9BACT)

HSP 1 Score: 365 bits (938), Expect = 6.030e-116
Identity = 186/281 (66.19%), Postives = 234/281 (83.27%), Query Frame = 1
Query:    1 IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKAKESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGNRFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDTEERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQTALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVPLALSGALLTLWYFNETLNIFSQIGMIMLIGL 843
            +  N +AR F+ +  TIGNR G  LP+ YVLQ   LD+LKEV+P FI +A ++ VF +V+VDL+FNKPE+ + I+R KA+ +GVSV++IAQTLQLSLSG RFGYFI +GKQY +IGQ+E+SDR++PLDLKSIY++ ++G L+Q+DNL+  EE+STPPQL+ YNRF SAT+SA+LA G SLG+GIE MD +A +VLD  F TAL+G SLEF QSSGNLYFAFG AL+LIYLVLAAQFESFRDPL IMFTVPLAL+G LL+L+ F ET+NIFSQIG+I+LIGL
Sbjct:  639 VAKNTRARAFVSQPQTIGNRRGR-LPVQYVLQAPNLDKLKEVIPSFIKEANQTGVFDFVNVDLKFNKPEINIAIDRNKARDLGVSVQNIAQTLQLSLSGQRFGYFIKDGKQYQIIGQMERSDRDDPLDLKSIYIENEDGELIQMDNLVTLEEKSTPPQLYRYNRFASATISASLAAGNSLGDGIEAMDEVAAKVLDGSFSTALAGTSLEFTQSSGNLYFAFGFALVLIYLVLAAQFESFRDPLIIMFTVPLALAGTLLSLYAFGETINIFSQIGIIVLIGL 918          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6AXP6_9BACT7.630e-14379.72Acriflavin resistance protein n=3 Tax=Cytophagales... [more]
A0A654DWL2_9BACT5.940e-14280.07Multidrug efflux pump n=1 Tax=Marinoscillum sp. 10... [more]
A0A3D9L3X4_MARFU4.620e-14179.36Multidrug efflux pump n=1 Tax=Marinoscillum furves... [more]
UPI0012BD0E5E1.110e-12168.33efflux RND transporter permease subunit n=3 Tax=Fu... [more]
UPI0012BC63201.700e-12068.33efflux RND transporter permease subunit n=1 Tax=Fu... [more]
UPI001923B4497.130e-11866.90efflux RND transporter permease subunit n=1 Tax=Fu... [more]
UPI001F35CF571.970e-11766.55efflux RND transporter permease subunit n=1 Tax=Fu... [more]
L8K1L6_9BACT7.920e-11766.55RND multidrug efflux transporter n=1 Tax=Fulvivirg... [more]
UPI00197A773A1.110e-11666.90efflux RND transporter permease subunit n=1 Tax=Fu... [more]
A0A553FQF5_9BACT6.030e-11666.19Efflux RND transporter permease subunit n=1 Tax=Fu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10010contigC-australica_Contig_10010:3..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1237149.C900_01424
Preferred namebepE_4
PFAMsACR_tran
Model size843
Max annot lvl976|Bacteroidetes
KEGG koko:K03296,ko:K18138
KEGG TC2.A.6.2
KEGG Pathwayko01501,ko01503,map01501,map01503
KEGG ModuleM00647,M00699,M00718
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-117
EggNOG OGsCOG0841@1|root,COG0841@2|Bacteria,4NDZG@976|Bacteroidetes,47K8C@768503|Cytophagia
DescriptionBelongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Cds size843
COG categoryV
BRITEko00000,ko00001,ko00002,ko01504,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586736.689867-CDS-C-australica_Contig_10010:2..8451682586736.689867-CDS-C-australica_Contig_10010:2..845Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10010 3..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10010.1.1prot_C-australica_Contig_10010.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10010 3..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10010.1.1

>prot_C-australica_Contig_10010.1.1 ID=prot_C-australica_Contig_10010.1.1|Name=mRNA_C-australica_Contig_10010.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=281bp
IQSNPKARDFIVEVPTIGNRFGTGLPLSYVLQCRELDELKEVLPEFIAKA
KESDVFSYVDVDLRFNKPELGVRINREKAQSMGVSVRDIAQTLQLSLSGN
RFGYFIMNGKQYYVIGQVEKSDRNEPLDLKSIYVKAKNGGLVQLDNLIDT
EERSTPPQLFHYNRFTSATVSAALAPGISLGEGIEEMDRIADEVLDDRFQ
TALSGQSLEFQQSSGNLYFAFGLALILIYLVLAAQFESFRDPLTIMFTVP
LALSGALLTLWYFNETLNIFSQIGMIMLIGL
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mRNA from alignment at C-australica_Contig_10010:3..845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10010.1.1 ID=mRNA_C-australica_Contig_10010.1.1|Name=mRNA_C-australica_Contig_10010.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=843bp|location=Sequence derived from alignment at C-australica_Contig_10010:3..845- (Chrysoparadoxa australica CS_1217)
ATCCAGTCTAATCCCAAAGCCAGGGATTTTATCGTGGAAGTACCAACAAT TGGAAATCGATTTGGCACAGGTCTCCCATTAAGTTACGTGCTCCAATGCC GGGAGCTTGATGAGCTTAAGGAAGTGCTCCCTGAATTCATTGCTAAAGCA AAAGAAAGTGATGTTTTCAGTTACGTAGACGTTGATTTAAGATTTAATAA ACCGGAACTTGGTGTAAGGATTAACCGGGAAAAAGCACAAAGCATGGGCG TTTCAGTTCGTGACATCGCCCAAACCCTTCAATTGAGTCTAAGTGGAAAT CGATTTGGCTACTTTATCATGAATGGTAAGCAATACTATGTAATTGGACA GGTGGAGAAAAGTGACCGAAATGAGCCCCTCGACCTCAAATCCATCTATG TGAAAGCCAAAAATGGAGGACTCGTGCAATTAGATAACCTGATCGATACG GAAGAAAGATCTACCCCTCCTCAACTATTCCATTACAATCGTTTCACCTC TGCTACAGTTTCTGCTGCTTTGGCACCTGGTATTTCACTTGGTGAGGGGA TCGAGGAGATGGATCGCATAGCTGATGAAGTACTGGATGATCGTTTCCAG ACGGCATTATCCGGACAATCGCTTGAGTTTCAGCAAAGCTCAGGAAATCT CTACTTTGCCTTTGGCTTGGCACTCATTCTCATCTATCTGGTATTAGCTG CTCAATTTGAAAGCTTTAGGGATCCATTGACCATTATGTTTACCGTGCCA CTGGCACTTTCAGGTGCCCTACTTACTTTATGGTATTTCAATGAAACCCT CAATATTTTCTCCCAAATTGGAATGATCATGCTCATCGGCCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_10010:3..845-

>mRNA_C-australica_Contig_10010.1.1 ID=mRNA_C-australica_Contig_10010.1.1|Name=mRNA_C-australica_Contig_10010.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=843bp|location=Sequence derived from alignment at C-australica_Contig_10010:3..845- (Chrysoparadoxa australica CS_1217)
ATCCAGTCTAATCCCAAAGCCAGGGATTTTATCGTGGAAGTACCAACAAT
TGGAAATCGATTTGGCACAGGTCTCCCATTAAGTTACGTGCTCCAATGCC
GGGAGCTTGATGAGCTTAAGGAAGTGCTCCCTGAATTCATTGCTAAAGCA
AAAGAAAGTGATGTTTTCAGTTACGTAGACGTTGATTTAAGATTTAATAA
ACCGGAACTTGGTGTAAGGATTAACCGGGAAAAAGCACAAAGCATGGGCG
TTTCAGTTCGTGACATCGCCCAAACCCTTCAATTGAGTCTAAGTGGAAAT
CGATTTGGCTACTTTATCATGAATGGTAAGCAATACTATGTAATTGGACA
GGTGGAGAAAAGTGACCGAAATGAGCCCCTCGACCTCAAATCCATCTATG
TGAAAGCCAAAAATGGAGGACTCGTGCAATTAGATAACCTGATCGATACG
GAAGAAAGATCTACCCCTCCTCAACTATTCCATTACAATCGTTTCACCTC
TGCTACAGTTTCTGCTGCTTTGGCACCTGGTATTTCACTTGGTGAGGGGA
TCGAGGAGATGGATCGCATAGCTGATGAAGTACTGGATGATCGTTTCCAG
ACGGCATTATCCGGACAATCGCTTGAGTTTCAGCAAAGCTCAGGAAATCT
CTACTTTGCCTTTGGCTTGGCACTCATTCTCATCTATCTGGTATTAGCTG
CTCAATTTGAAAGCTTTAGGGATCCATTGACCATTATGTTTACCGTGCCA
CTGGCACTTTCAGGTGCCCTACTTACTTTATGGTATTTCAATGAAACCCT
CAATATTTTCTCCCAAATTGGAATGATCATGCTCATCGGCCTG
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