mRNA_C-australica_Contig_1001.6.7 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI) HSP 1 Score: 298 bits (762), Expect = 4.640e-82 Identity = 177/499 (35.47%), Postives = 248/499 (49.70%), Query Frame = 3
Query: 498 MKRYLFRLDHGLRADRRLREAKDWIDAQQGAKAKFWSDIREVTAMKQEGAALHIQSCYRGYRGRLRASERRAQNAAATCVQRHXXXXXXXRIAEEKKWDKVRVTPTSYALKITLSRSHVTQTSKTGWREYYDPDTRGFFYYEPETRNSTWDPPTCFADSMICLWDPWPYPYSSPHDRPCRARFTTMHAYQSHRLSAHSWHCPACSSENTAMTFPVCEMCGNSRDENGEDLEKVLKAKLKQMLFEAHNPNQPDFTSAWEGAEHSMEVAVFASEPAPERMVQLPNSRSEAEDEFGAHEFSDAMSKGMQCPPQHSKDKEIKEQLSSDPISSTEQLSNFSRPALAFGARLRVCHCFLNGQCSLTTCPMAHPGVRDDAKISESEVPGLRSIMEV--------------------------------EICSEALRAMWGEGEE-CPHGGLCHKYHPYVRPATADIIKKIYPKKNGPRVRMYPSGAKMDGTVKNEVFEGWGVYTWP 1895
M+ +L R D RA RRL++A++W+D K +W D++ A ++E AA +Q+ YRG+ GR A++RRA XXXXXXX E++W +++V TSY+LK+ RS Q GW EY+DPDT F+Y E T++STW+ P F+DSM C+WDPWP PYSSP D+PCR FT M +Q+HRL+AH W C + N+ MTFP CE+ D + +L + P + D + + AV + + + + G P G LRVCH F G+C+L+TCP AHPG+RDDAK+ E G R + +V ++C AL A +G+GE CP G C YHPYVRP+T +I+ +IYP++NG R ++YPSGA + G V NEVF+G+GVY+WP
Sbjct: 1 MRAFLRRRDRDGRASRRLQQAREWVDGCSSTKMGYWEDLKAAEADRREQAATAMQAAYRGWEGRQIAADRRAXXXXXXXXXXXXXXXXXXXXXTEERWKQLQVVRTSYSLKLLTQRSRQVQ-EVGGWVEYFDPDTSAFWYLENSTKHSTWNAPKDFSDSMTCVWDPWPVPYSSPLDKPCRKVFTNMAEFQAHRLNAHPWQCASWGQRNSGMTFPRCELW---------DSKDILPTRSASKTTGV--PRRKDVANGVLADREGVGGAVLRAAXXXXXXXXXXXXXXXS--------ITTTIGSGATASP---------------------------------GMNLRVCHRFTQGRCNLSTCPHAHPGIRDDAKLQRLETKGSRGLFQVSQTYGSGVENDDDVESLLRRMGDGGVGTPPPPKVCPLALAAAFGDGEPPCPSGQGCKMYHPYVRPSTDEIVARIYPRRNGDRTKVYPSGASLKGRVVNEVFQGYGVYSWP 446
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Match: A0A7S3MGV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGV2_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 9.500e-19 Identity = 52/181 (28.73%), Postives = 86/181 (47.51%), Query Frame = 3
Query: 597 KFWSDIREVTAMKQEGAALHIQSCYRGYRGRLRASERRAQNAAATCVQRHXXXXXXXRIAEEKKWDKVRVTPTSYALKITLSRS-----HVTQTSKT-GWREYYDPDTRGFFYYEPETRNSTWDPPTCFADSMICLWDPWPYPYSSPHDRPCRARFTTMHAYQSHRLSAHSWHCPACSSEN 1121
K S +++ ++ AA IQ+ +G+ R + ++ +QR + + W + V + AL +SRS HV K W+E++DP T F+YY T+++TW P F ++C W+ +P PH +PCR F T+ AY++H H+W+C AC N
Sbjct: 15 KIASKSQQIHKAREYYAASKIQAIVKGFLDRKFCARKKKYQRVILLIQRVFKGKLGRLRWKREYWRSLSVVKSDSALHEIMSRSSKLREHVVPGKKPYKWKEFFDPLTESFWYYNTATKHNTWQVPLEFQKDLVCSWEGFPEAGGEPHVQPCRCTFDTVDAYRNHMRQGHAWYCVACHQRN 195
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Match: A0A7S3MJB2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJB2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.200e-13 Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3
Query: 1530 RLRVCHCFLNGQCSLTTCPMAHPGVRDDA----KISESEVPGLRSIME-VEICSEALRAMWGEGEECPHGGLCHKYHPYVRPATADIIKKIYPKKNGPRVRMYPSGAKMDGTVKNEVFEGWGVYTW 1892
+L VC FL G C+LTTCP+AHPG+RD + K V G + + V +C E C +G C YH Y+RP+T +II IYP G +++ + S A++ G V +F+G+GV T+
Sbjct: 60 KLTVCSKFLAGTCTLTTCPLAHPGLRDSSRPKQKTLRDPVSGEKVVTHYVYLCPEVTPLC----NNCHNGNACRNYHVYIRPSTQEIILAIYPILTGRKIKDFGS-ARLVGNVFRGLFDGYGVMTY 180 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1001.6.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1001.6.7 >prot_C-australica_Contig_1001.6.7 ID=prot_C-australica_Contig_1001.6.7|Name=mRNA_C-australica_Contig_1001.6.7|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=897bp MKRYLFRLDHGLRADRRLREAKDWIDAQQGAKAKFWSDIREVTAMKQEGAback to top mRNA from alignment at C-australica_Contig_1001:9789..17384- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1001.6.7 ID=mRNA_C-australica_Contig_1001.6.7|Name=mRNA_C-australica_Contig_1001.6.7|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=7596bp|location=Sequence derived from alignment at C-australica_Contig_1001:9789..17384- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1001:9789..17384- >mRNA_C-australica_Contig_1001.6.7 ID=mRNA_C-australica_Contig_1001.6.7|Name=mRNA_C-australica_Contig_1001.6.7|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=2691bp|location=Sequence derived from alignment at C-australica_Contig_1001:9789..17384- (Chrysoparadoxa australica CS_1217)back to top |