mRNA_C-australica_Contig_1001.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1001.1.1
Unique NamemRNA_C-australica_Contig_1001.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1001.1.1 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.440e-18
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 SSYYNAPVSINICQCEEVIPGTYNRVVELQISGHKFCTAHSIIALHSDACIEAVRGKSIGIGQLFRSCE 207
            SSYYNAPV ++I QC+      Y R+V L + G +FC A SI+ LHSDACIEAV  KS+GIGQLFR  +
Sbjct:  142 SSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLD 210
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNG4_9STRA3.440e-1857.97Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1001contigC-australica_Contig_1001:136..375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr48906
Model size240
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.96e-05
EggNOG OGs2DIV6@1|root,2RWUQ@2759|Eukaryota,2XDTI@2836|Bacillariophyta
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586736.0938144-CDS-C-australica_Contig_1001:135..3751682586736.0938144-CDS-C-australica_Contig_1001:135..375Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 136..375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1001.1.1prot_C-australica_Contig_1001.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1001 136..375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1001.1.1

>prot_C-australica_Contig_1001.1.1 ID=prot_C-australica_Contig_1001.1.1|Name=mRNA_C-australica_Contig_1001.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=80bp
SSYYNAPVSINICQCEEVIPGTYNRVVELQISGHKFCTAHSIIALHSDAC
IEAVRGKSIGIGQLFRSCELAWHFSSRCS*
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mRNA from alignment at C-australica_Contig_1001:136..375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1001.1.1 ID=mRNA_C-australica_Contig_1001.1.1|Name=mRNA_C-australica_Contig_1001.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=240bp|location=Sequence derived from alignment at C-australica_Contig_1001:136..375+ (Chrysoparadoxa australica CS_1217)
AGCTCCTACTACAATGCACCAGTATCTATCAACATCTGCCAGTGCGAAGA
GGTCATCCCAGGCACTTACAATAGAGTTGTAGAGCTCCAAATTAGTGGTC
ACAAGTTTTGCACGGCTCACTCCATTATTGCACTGCACAGTGATGCATGT
ATCGAAGCTGTCAGGGGCAAGAGCATAGGAATTGGGCAGCTCTTCAGGTC
ATGTGAGCTGGCATGGCACTTCTCCAGTCGTTGCTCATAA
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Coding sequence (CDS) from alignment at C-australica_Contig_1001:136..375+

>mRNA_C-australica_Contig_1001.1.1 ID=mRNA_C-australica_Contig_1001.1.1|Name=mRNA_C-australica_Contig_1001.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=240bp|location=Sequence derived from alignment at C-australica_Contig_1001:136..375+ (Chrysoparadoxa australica CS_1217)
AGCTCCTACTACAATGCACCAGTATCTATCAACATCTGCCAGTGCGAAGA
GGTCATCCCAGGCACTTACAATAGAGTTGTAGAGCTCCAAATTAGTGGTC
ACAAGTTTTGCACGGCTCACTCCATTATTGCACTGCACAGTGATGCATGT
ATCGAAGCTGTCAGGGGCAAGAGCATAGGAATTGGGCAGCTCTTCAGGTC
ATGTGAGCTGGCATGGCACTTCTCCAGTCGTTGCTCATAA
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