mRNA_C-australica_Contig_1001.2.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1001.2.3
Unique NamemRNA_C-australica_Contig_1001.2.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1001.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1001contigC-australica_Contig_1001:3626..6802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1491
Hectar predicted targeting categoryother localisation
Exons14
Cds size987
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1001.2.3prot_C-australica_Contig_1001.2.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1001 3757..5924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.9175324-UTR-C-australica_Contig_1001:3625..36701682586735.9175324-UTR-C-australica_Contig_1001:3625..3670Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1001 3626..3670 +
1682586735.9260576-UTR-C-australica_Contig_1001:3732..37561682586735.9260576-UTR-C-australica_Contig_1001:3732..3756Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1001 3733..3756 +
1682586736.0309894-UTR-C-australica_Contig_1001:5924..62091682586736.0309894-UTR-C-australica_Contig_1001:5924..6209Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1001 5925..6209 +
1682586736.0408263-UTR-C-australica_Contig_1001:6325..63601682586736.0408263-UTR-C-australica_Contig_1001:6325..6360Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1001 6326..6360 +
1682586736.0517356-UTR-C-australica_Contig_1001:6492..65551682586736.0517356-UTR-C-australica_Contig_1001:6492..6555Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1001 6493..6555 +
1682586736.063242-UTR-C-australica_Contig_1001:6750..68021682586736.063242-UTR-C-australica_Contig_1001:6750..6802Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1001 6751..6802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.9340858-CDS-C-australica_Contig_1001:3756..38241682586735.9340858-CDS-C-australica_Contig_1001:3756..3824Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 3757..3824 +
1682586735.9481847-CDS-C-australica_Contig_1001:3972..40461682586735.9481847-CDS-C-australica_Contig_1001:3972..4046Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 3973..4046 +
1682586735.9588814-CDS-C-australica_Contig_1001:4195..42611682586735.9588814-CDS-C-australica_Contig_1001:4195..4261Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 4196..4261 +
1682586735.9668424-CDS-C-australica_Contig_1001:4323..44881682586735.9668424-CDS-C-australica_Contig_1001:4323..4488Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 4324..4488 +
1682586735.9768977-CDS-C-australica_Contig_1001:4603..47071682586735.9768977-CDS-C-australica_Contig_1001:4603..4707Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 4604..4707 +
1682586735.9893796-CDS-C-australica_Contig_1001:4860..49081682586735.9893796-CDS-C-australica_Contig_1001:4860..4908Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 4861..4908 +
1682586735.997594-CDS-C-australica_Contig_1001:5095..51851682586735.997594-CDS-C-australica_Contig_1001:5095..5185Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 5096..5185 +
1682586736.0056226-CDS-C-australica_Contig_1001:5279..53151682586736.0056226-CDS-C-australica_Contig_1001:5279..5315Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 5280..5315 +
1682586736.0137506-CDS-C-australica_Contig_1001:5505..55621682586736.0137506-CDS-C-australica_Contig_1001:5505..5562Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 5506..5562 +
1682586736.0217242-CDS-C-australica_Contig_1001:5645..59241682586736.0217242-CDS-C-australica_Contig_1001:5645..5924Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 5646..5924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1001.2.3

>prot_C-australica_Contig_1001.2.3 ID=prot_C-australica_Contig_1001.2.3|Name=mRNA_C-australica_Contig_1001.2.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=329bp
MAAAKRDSEAAFHEDERRRKEERAVASSGKTRSRRSSKEGHGEDKPPGKS
GTEKQKNSCRRSTASGGAGGPRKRSTDPAAAAATVAPAEDILSANPAVFA
IATDNGSFDPLDCGVSSVSASASKVDSAAVLQLGMSFSSVNVSYQDMIQQ
QCLPEPPAEGAPMPDQDEAKKDLWELAKHSSFVNFDDITDTRDKKSVQKQ
LRVTPDNRTLAELAASKQQHQKGTESQPAMMQPIDSVNGMSAPLQQQPQQ
QQQQYIQQQQLQYGQQLPMHPQQFMMQQQSTMSVDAAFHPEYRVNAVAQQ
HNQVCVCPSCFSPPPPKATDSQIRVDPS*
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mRNA from alignment at C-australica_Contig_1001:3626..6802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1001.2.3 ID=mRNA_C-australica_Contig_1001.2.3|Name=mRNA_C-australica_Contig_1001.2.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3177bp|location=Sequence derived from alignment at C-australica_Contig_1001:3626..6802+ (Chrysoparadoxa australica CS_1217)
TACGAGTTCTCCTTGGACTCCAAGCCCTTTAGCAGCTGGCCAAGGGTGAG
TAATGCATCCCGCTGTACCCGGCACGTACTGACCTCATACCCCTTGCTTT
GGACTAGGTTGACCCCCACCTGGCAGCATCAATGGCAGCGGCAAAGCGAG
ACAGTGAGGCTGCATTCCATGAAGATGAGAGAAGGCGAAAGGAGGAGAGG
TCCTCCTGACCTCATCCACGACTCTTGACCCTTGCCTTGGCCTGGCCTCC
AGCACTGGGACTTGACTGTTCCCGTGTGAGCCAACTGAATGCGGACCTAG
AGCTGTATTACGCCGGGCTTTCTTGTCCTGACTTGAATCTCTTACAGGGC
GGTGGCATCTTCAGGAAAGACTAGGTCACGGCGATCCAGTAAAGAGGGCC
ATGGAGAGGACAAGCCTCCAGGTCATGGAACAAAAGACTGGGCCTTTGGC
AGCAGTGATAACGCATAACTGGCATGATGAAAATGCAGTCCCTTGAACAG
GCTTTGCCTTGTCCTGGACTTGGGCCGCTCAAGCTCATGTGTTTCCTATT
CCCTGCTTCCACCTGCGCAGGCAAGTCAGGGACAGAGAAGCAAAAGAACA
GCTGTAGACGCAGCACTGCATCTGGAGGTGCAGGAGGTAATTGTGAGCTC
TCACTTCCCTAGGTATTCTTTTACCCATTCTTTCATCTTTCATCTTAGGT
CCCCGCAAGCGCTCGACTGACCCTGCTGCGGCTGCTGCAACTGTTGCTCC
TGCGGAGGACATCCTATCTGCCAACCCAGCTGTTTTTGCTATTGCTACAG
ATAATGGATCTTTTGATCCACTGGATTGCGGCGTTTCCAGTGTCAGTGCC
TCTGCAAGCAAAGGTGAAGCAGTTGTCCATGAGAAGTATGAAGGCTTGGG
CAGATATCGAGGCTCTCCTGCATAGTGCAGCTGTGCTCTAGCCTGATTTA
CCCTGCTTGCCTCTTTTGTGCACTTTAGTGGACAGTGCAGCTGTGCTCCA
GCTCGGAATGAGTTTCTCTTCCGTGAATGTAAGCTATCAGGACATGATCC
AACAACAGTGCCTTCCCGAGCCTCCAGCAGAGGTCAGTAGCGGGTGATCT
TTATCTCCCCATGCTCTGGTAGGAGGTTTAGCCTTTTTGGTGTATGGTGC
TTCTGCTTTACCATTTCCCACTGTTTATATTCTTTGGCTTTTGCCTCTCT
GCCCCCTATCCTCTGTATCTCATGTGCGCTATCAGGGAGCACCTATGCCA
GACCAAGATGAAGCGAAAAAGGATTTATGGGAGGTGAGACCTGGTGCCCT
AGCTCAACATCAGCTGCAGGCCTGCCCCACGTCACCTACCCTAGGTGGAG
GTTGGCTGTGGACATGTCGTCTACTTTACTGGAGTATCCAAAACAAAAAG
CTCACTGTTAGTTCATTGGGTGGACACGCTGACCTCAGACGCCAAATCCC
ATTAATACGGCTTTCCTCAGCTGGCAAAGCACAGCAGCTTTGTCAACTTT
GATGACATTACGGACACGAGGGACAAGAAGAGTGTGCAAAAGCAACTCAG
GGTTACACCGGTAAGGGCAGGGATAAGCATATTGGCGCACCGGGTTCAGC
TTTCTACTGCAACATTGTTGAACCAGCGAAGTCACTAAGTCATTGTTTTG
GCAGGACAATCGCACCCTAGCCGAGCTAGCAGCAAGCAAGGTTTGGCCTT
GCCGGATCTTCTTCTCTCCGCCCCTTACCTCGCTTTGTTATGCGAAGCGC
TAACTTCAGCTTTGTTGTGCTTCGCTGACAAATTGTGTAACTTTTCTTCA
ACCTCACCTTACTTGCCTTTTCAGCTACTTGCCTTTGCTTGTCCAGTTGA
CAGTTATATTTTGATTTTATGCCTTTCCAGCAGCAGCACCAAAAGGGCAC
GGAGTCGCAACCTGCTATGATGCAACCTATAGACTCGGTAGGTGCAAAGC
AACGGTTGGAAAGCGCACTCTTGTGGTGCAGAGCCACACCTTGCCTCACC
ATCTTCCCTACTCTTCATAGGTTAATGGCATGAGCGCTCCATTGCAGCAG
CAGCCGCAGCAGCAGCAGCAGCAATATATCCAGCAGCAACAGCTGCAGTA
CGGACAGCAGCTGCCTATGCACCCCCAGCAATTCATGATGCAGCAGCAAT
CAACCATGTCTGTTGATGCAGCCTTCCACCCGGAATACCGAGTGAATGCT
GTTGCGCAGCAACACAACCAAGTATGTGTCTGCCCCTCTTGCTTCAGCCC
GCCACCCCCCAAGGCAACTGACTCCCAGATTCGCGTAGATCCTAGCTAAT
TCGGATTTTCTGATTTTCTTCTAGGCTTGGGCGTATTCACCGAACCAACC
CTATCCTGGACAGCGTTAAATGGCTTTAGGTGAAAGCCCAAGTCAAGGAA
TGCCATTGAGTTCCCTGAACATTTGCAGCATTCCCATTTCTTGCTGGGAA
GCAACATTCCAGCGAGCCGGGTCACAAGCTTTTGGCTTCTGAGTCGGCAA
TGCTTTGGCGCAAGCTCAAAAAGAAAATCCAATTACTTTTCGCTCTTCCG
TGCTCTGTTTCCTTTCCGCCTTTCCTCCAGCCTTGCTCTCCTAGGAAAAG
AATCGGGCTTGGGTACTCATGTTTAGGCTCGTTTGGCAACACTATCTGAG
CTGGGTTCCTCCTATCTTCCCACTTTTAACTCGCCCATGCCTCACTCCAG
CTTACCTATTGTCGGCCCCTCCCTTCCTGGTGCCTCCTGTAAGGTTAAAA
CGGTTACAGGAGAGGGGAGAACTGGGGTCAGTGTCAAATACTATGATAAA
ACCAGCTCAAGAATGTAGAGCTTGGCAGGATTGTTAAGGAGCCCGGATCA
GCTAAACATCTGGCTCACCTATCTTGGATGAGGTCTTTTTTTCTCGCACT
TTACTGGTGGCAGCTTGCTTTGCCTTAAAGCTGAGATTTAGTGCATGCGT
CAGGGTTACGGCCTGTACGATGTCAATTCATGGACAGCTAAAAGCTTCCG
GCTTAGGGTGGCGCCAGGACAGGGCGCAGGTGGGTCATGGCCATCTGCAC
TAACACCAAATAACCTAGTCAGGATGCTGTTTGGGGGCAGCGGTCCTGAG
CTGACGGAGGAACCATAAGTCTCACCGCCTATATTCCTCAGTCTCTGTAT
TGAGTGTTCTCATTGCAAGGATCCTCG
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Coding sequence (CDS) from alignment at C-australica_Contig_1001:3626..6802+

>mRNA_C-australica_Contig_1001.2.3 ID=mRNA_C-australica_Contig_1001.2.3|Name=mRNA_C-australica_Contig_1001.2.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=987bp|location=Sequence derived from alignment at C-australica_Contig_1001:3626..6802+ (Chrysoparadoxa australica CS_1217)
ATGGCAGCGGCAAAGCGAGACAGTGAGGCTGCATTCCATGAAGATGAGAG
AAGGCGAAAGGAGGAGAGGGCGGTGGCATCTTCAGGAAAGACTAGGTCAC
GGCGATCCAGTAAAGAGGGCCATGGAGAGGACAAGCCTCCAGGCAAGTCA
GGGACAGAGAAGCAAAAGAACAGCTGTAGACGCAGCACTGCATCTGGAGG
TGCAGGAGGTCCCCGCAAGCGCTCGACTGACCCTGCTGCGGCTGCTGCAA
CTGTTGCTCCTGCGGAGGACATCCTATCTGCCAACCCAGCTGTTTTTGCT
ATTGCTACAGATAATGGATCTTTTGATCCACTGGATTGCGGCGTTTCCAG
TGTCAGTGCCTCTGCAAGCAAAGTGGACAGTGCAGCTGTGCTCCAGCTCG
GAATGAGTTTCTCTTCCGTGAATGTAAGCTATCAGGACATGATCCAACAA
CAGTGCCTTCCCGAGCCTCCAGCAGAGGGAGCACCTATGCCAGACCAAGA
TGAAGCGAAAAAGGATTTATGGGAGCTGGCAAAGCACAGCAGCTTTGTCA
ACTTTGATGACATTACGGACACGAGGGACAAGAAGAGTGTGCAAAAGCAA
CTCAGGGTTACACCGGACAATCGCACCCTAGCCGAGCTAGCAGCAAGCAA
GCAGCAGCACCAAAAGGGCACGGAGTCGCAACCTGCTATGATGCAACCTA
TAGACTCGGTTAATGGCATGAGCGCTCCATTGCAGCAGCAGCCGCAGCAG
CAGCAGCAGCAATATATCCAGCAGCAACAGCTGCAGTACGGACAGCAGCT
GCCTATGCACCCCCAGCAATTCATGATGCAGCAGCAATCAACCATGTCTG
TTGATGCAGCCTTCCACCCGGAATACCGAGTGAATGCTGTTGCGCAGCAA
CACAACCAAGTATGTGTCTGCCCCTCTTGCTTCAGCCCGCCACCCCCCAA
GGCAACTGACTCCCAGATTCGCGTAGATCCTAGCTAA
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