mRNA_C-australica_Contig_10009.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10009.1.1
Unique NamemRNA_C-australica_Contig_10009.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A2D7DV46_9FLAO (Spheroidene monooxygenase (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D7DV46_9FLAO)

HSP 1 Score: 72.0 bits (175), Expect = 4.330e-15
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   13 GLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSILK 183
            G+GEWP     T S+W+ LDD KNFAY++++H+   +  R  +W+ ED+F RF++ K
Sbjct:   18 GIGEWPLIQQATFSIWKSLDDVKNFAYKNIDHSSIVKKTRKRNWYSEDMFTRFAVRK 74          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: UPI001ABACBD2 (spheroidene monooxygenase n=1 Tax=Pseudaestuariivita rosea TaxID=2763263 RepID=UPI001ABACBD2)

HSP 1 Score: 68.2 bits (165), Expect = 3.220e-12
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSIL 180
            LF  G+GE P+ H +T S+W   D    FA     HA+A Q+ RDG+WFKE+L+ RF+I+
Sbjct:  158 LFKIGIGEVPWLHQVTFSIWPDTDSMARFARRDGPHARAIQAVRDGNWFKEELYARFAIV 217          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A2E8XAW9_9RHOB (Spheroidene monooxygenase n=1 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A2E8XAW9_9RHOB)

HSP 1 Score: 68.2 bits (165), Expect = 3.670e-12
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSILK 183
            LF  GLGE P+ H +T S+W + +   NFA +   HAKA +S R+G+WF E+L+ RF + K
Sbjct:  176 LFKMGLGEIPWFHQVTFSIWPNAESMSNFARKDGPHAKAIKSVREGNWFSEELYARFKVEK 236          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A2E0YH47_9RHOB (Spheroidene monooxygenase (Fragment) n=1 Tax=Aestuariivita sp. TaxID=1872407 RepID=A0A2E0YH47_9RHOB)

HSP 1 Score: 64.7 bits (156), Expect = 1.330e-11
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSIL 180
            +F  G+GE PF H IT S+W        FA +   HA+A QS R+G WFKE+L+ RF ++
Sbjct:   62 MFKIGIGEVPFFHQITFSIWPDAISMAEFARKDGPHARAIQSVREGLWFKEELYARFKVI 121          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A4R0NEH6_9SPHI (DUF3291 domain-containing protein n=1 Tax=Pedobacter frigidisoli TaxID=2530455 RepID=A0A4R0NEH6_9SPHI)

HSP 1 Score: 66.2 bits (160), Expect = 1.510e-11
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSIL 180
            +FSAG+GE PFS   T S+WR  +  KN+AY+  +H+   +  R+  W+ E+LF RF I+
Sbjct:  156 IFSAGVGENPFSDQATFSIWRDAESMKNYAYKSFDHSDVIKLTRERQWYSEELFARFEII 215          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A1P8N1I6_9RHOB (Spheroidene monooxygenase n=1 Tax=Tateyamaria omphalii TaxID=299262 RepID=A0A1P8N1I6_9RHOB)

HSP 1 Score: 65.9 bits (159), Expect = 2.360e-11
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSIL 180
            LF  G+GE P  H +T S+W    +   FA  +  HA+A Q+ RDG+WF+E+L+ RF+IL
Sbjct:  158 LFKIGIGEVPMLHQVTFSIWPGAHEMAQFARHNGPHAEAIQAVRDGAWFREELYARFTIL 217          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A7X0A7X5_9SPHI (Heme-degrading monooxygenase HmoA n=1 Tax=Mucilaginibacter sp. FT3.2 TaxID=2723090 RepID=A0A7X0A7X5_9SPHI)

HSP 1 Score: 65.1 bits (157), Expect = 4.440e-11
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    7 SAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSIL 180
            S G+GE PF    T S+W+ +DD KNFAY+  EHA+  +  R  +W+ E+LF RF ++
Sbjct:  158 SFGVGEAPFYRQATFSIWKSVDDVKNFAYKSREHAEVIKLTRSENWYSEELFARFRLI 215          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A2P6GL38_9RHOB (Spheroidene monooxygenase n=1 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A2P6GL38_9RHOB)

HSP 1 Score: 64.7 bits (156), Expect = 6.420e-11
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSILK 183
            LF  GLGE P+ H +T S+W +     +FA +   HAKA +S R+G+WF E+L+ RF + K
Sbjct:  164 LFKMGLGEIPWFHQVTFSIWPNAKTMADFARKDGPHAKAIKSVREGNWFSEELYARFEVKK 224          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A177HBU9_9RHOB (Spheroidene monooxygenase n=4 Tax=Bacteria TaxID=2 RepID=A0A177HBU9_9RHOB)

HSP 1 Score: 64.3 bits (155), Expect = 6.740e-11
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSIL 180
            LF  G+GE PF H IT S+W        FA     HAKA  + R G WFKE+L+ RF++L
Sbjct:  135 LFKIGIGEVPFLHQITFSIWPSTQSMAEFARHDGPHAKAISAVRKGLWFKEELYARFAVL 194          
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Match: A0A0B4C761_9RHOB (Spheroidene monooxygenase n=3 Tax=Tateyamaria TaxID=299261 RepID=A0A0B4C761_9RHOB)

HSP 1 Score: 64.3 bits (155), Expect = 8.950e-11
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFKEDLFVRFSIL 180
            +F  G+GE P  H +T S+W    +   FA ++  HA+A ++ RDG+WF+E+L+ RF+IL
Sbjct:  158 VFKIGIGEVPMLHQVTFSIWPGAQEMAQFARQNGPHAEAIKAVRDGAWFREELYARFTIL 217          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7DV46_9FLAO4.330e-1543.86Spheroidene monooxygenase (Fragment) n=1 Tax=Flavo... [more]
UPI001ABACBD23.220e-1246.67spheroidene monooxygenase n=1 Tax=Pseudaestuariivi... [more]
A0A2E8XAW9_9RHOB3.670e-1245.90Spheroidene monooxygenase n=1 Tax=Rhodobacterales ... [more]
A0A2E0YH47_9RHOB1.330e-1145.00Spheroidene monooxygenase (Fragment) n=1 Tax=Aestu... [more]
A0A4R0NEH6_9SPHI1.510e-1143.33DUF3291 domain-containing protein n=1 Tax=Pedobact... [more]
A0A1P8N1I6_9RHOB2.360e-1145.00Spheroidene monooxygenase n=1 Tax=Tateyamaria omph... [more]
A0A7X0A7X5_9SPHI4.440e-1144.83Heme-degrading monooxygenase HmoA n=1 Tax=Mucilagi... [more]
A0A2P6GL38_9RHOB6.420e-1144.26Spheroidene monooxygenase n=1 Tax=Rhodobacterales ... [more]
A0A177HBU9_9RHOB6.740e-1146.67Spheroidene monooxygenase n=4 Tax=Bacteria TaxID=2... [more]
A0A0B4C761_9RHOB8.950e-1141.67Spheroidene monooxygenase n=3 Tax=Tateyamaria TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10009contigC-australica_Contig_10009:641..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1270196.JCKI01000004_gene959
Preferred namecrtA
PFAMsDUF3291
Model size204
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.06e-12
EggNOG OGs29UQ5@1|root,30G1W@2|Bacteria,4NKX5@976|Bacteroidetes,1IS42@117747|Sphingobacteriia
Descriptionspheroidene monooxygenase
Cds size204
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.882848-CDS-C-australica_Contig_10009:640..8441682586735.882848-CDS-C-australica_Contig_10009:640..844Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10009 641..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10009.1.1prot_C-australica_Contig_10009.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10009 641..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10009.1.1

>prot_C-australica_Contig_10009.1.1 ID=prot_C-australica_Contig_10009.1.1|Name=mRNA_C-australica_Contig_10009.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=68bp
LFSAGLGEWPFSHPITLSVWRHLDDAKNFAYEHVEHAKAAQSARDGSWFK
EDLFVRFSILKHEQQTT*
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mRNA from alignment at C-australica_Contig_10009:641..844-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10009.1.1 ID=mRNA_C-australica_Contig_10009.1.1|Name=mRNA_C-australica_Contig_10009.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=204bp|location=Sequence derived from alignment at C-australica_Contig_10009:641..844- (Chrysoparadoxa australica CS_1217)
TTGTTCAGCGCAGGCTTGGGCGAATGGCCTTTTTCACACCCCATCACCTT GAGTGTTTGGAGACATTTAGACGACGCCAAAAATTTCGCCTACGAACATG TAGAACACGCGAAAGCAGCCCAGTCGGCACGTGACGGAAGTTGGTTCAAA GAAGACCTTTTTGTTCGGTTCTCCATTCTAAAACACGAGCAACAAACGAC ATAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10009:641..844-

>mRNA_C-australica_Contig_10009.1.1 ID=mRNA_C-australica_Contig_10009.1.1|Name=mRNA_C-australica_Contig_10009.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=204bp|location=Sequence derived from alignment at C-australica_Contig_10009:641..844- (Chrysoparadoxa australica CS_1217)
TTGTTCAGCGCAGGCTTGGGCGAATGGCCTTTTTCACACCCCATCACCTT
GAGTGTTTGGAGACATTTAGACGACGCCAAAAATTTCGCCTACGAACATG
TAGAACACGCGAAAGCAGCCCAGTCGGCACGTGACGGAAGTTGGTTCAAA
GAAGACCTTTTTGTTCGGTTCTCCATTCTAAAACACGAGCAACAAACGAC
ATAA
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