mRNA_C-australica_Contig_1000.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1000.5.1
Unique NamemRNA_C-australica_Contig_1000.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.320e-44
Identity = 136/494 (27.53%), Postives = 196/494 (39.68%), Query Frame = 3 
Query:  453 LYSAVRGFLQERQGYSHVWLRDACLPP--------GMLSSELGG-----VHMGALLCTHGSLSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEACLLTMTGASQHFYLECG-------------------------------------------------------------------------------------------------------------------GEGYY----------TDTTDQDQTIEEGVLEILTVMGLEGSGRAVEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFCELWEMIQVGLTPIPAHEQLGLVRMLSFAVAVARCDAARALPAAGLAGVLEEAAVPVKHGYGEWRNRRGGVHLDFWMKDLSPGDLEAILAKCTVQNNSDRAHHRPVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAGAEHKSLQSLTLTHNGLGRAGA 1520
            LY+  R FL E   + H+W+  AC+PP        G + S  G      +H GAL+     L  PP  +   +  +    +SDL+++ST+PW+ALE  ++ +  +   +    G                                                                                                                   G  +Y            T  +   IE  V E L  +G+ G+    E NW+G+L   F+L K   +V  +  A GALKQA+C+LS+S  QA EF  +W+ +   L P  ++++L ++ +L FAV+VA        P+  +  VL E+ V   H             LD WMKDLSP D   IL   +       A  + +  LTVGSSHT GAG+G F+  HP LRE+E+EWEG+RD+ S+  A  EHKSL  L LTHN +G  GA
Sbjct:  107 LYATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEHLHPGALVACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVIMQLMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPLDLRRGSAPASIVGADSPVGGRMATESPVDRAKAAAKLMFSKGTRMGWNSKSDMSAGDSLEDGRWNGWDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGGGGDVSRRRRSTPTEGSRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLRKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWKYL-ASLGPCASNDRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESLVTPGH-------------LDLWMKDLSPDDSRNILRAVS-------AAGKKLSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGA 579
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BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.680e-39
Identity = 147/524 (28.05%), Postives = 219/524 (41.79%), Query Frame = 3 
Query:  228 ASVFYPELSIDHILLLPRASFLPPEGK--PSYHECCGSLQMASEVFFNNPSAQVLYVSSLEGHQLRDT---------DVDEGYPRHLYSAVRGFLQERQGYSHVWLRDACLPPGMLSSELGGVHM----------------GALLCTHGS-----------------------LSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEACLLTMTGASQHFYLECGGEGYYT-----DTTDQDQTIEEGVLEILTVMGLEGSGRAVEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFCELWEMIQVGLTPIPAH--EQLGLVRMLSFAVAV-ARCDAARALPAAGLAGVLEEA-AVPVKHGYGEWRNRRGGVHLDFWMK-------------DLSPGDLEAILAKCTVQNNSDRAHHR--------PVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAGAEHKSLQSLTLTHNGLGRAGAECLGEMLMTNSSI 1559
            A  F+P LS+D ++ +PR+  L  + K  P Y E    L   ++V   +P+A++LY+S +   ++ D            +      L+ AV  FLQ+   ++ VW    CL  G  ++  GG +M                G +L                            L VPP               +DL+  +  PW ALE   L + GA  H       +  Y+     D  D  + +  G+ E +    L      V  NW+       L+     +VSG  QAGGAL+QA+C++S+++ QA EF   W  +  G     A   E+L ++ +L F VA   R  A    P    A +LE   A+P   G        GG+ LD WM              DLSP DL A+L       ++  A           P+ +LTVGSSH+GGAG+G F+  +  L  +E+EWE +RD+  +C        L +L LTHN +G  G   L   LM N+S+
Sbjct:   19 AGTFFPALSLDTLVFVPRSVLLDGQRKVLPLYGEVQRHLVDYNKVCAKHPNAKLLYLSYIPAERVPDKYGQRRSILGSEERQLWEELFGAVAAFLQDHTEFAFVWAPRCCLG-GAKATLPGGANMLEHCNPLALLVRDAACGTMLXXXXXXXXXXXXXXXXXXXXXXXACDTVLLVPPQRHPGDCASPTMHDHTDLRCCTDYPWVALETIYLHLAGAQGHVLFRYEEQRTYSELVGSDRQDVGKALCGGINETIDAYALCYED-PVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEG--------GGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQLARALMENTSL 532
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T8_ECTSI1.320e-4427.53Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z0E5_9STRA3.680e-3928.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1000contigC-australica_Contig_1000:11318..13734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5T8
PFAMsLRR_6
Model size2045
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.2e-45
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-12_009090.1
Descriptioninterleukin-8 biosynthetic process
Cds size1917
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1000.5.1prot_C-australica_Contig_1000.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1000 11339..13627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.6051183-UTR-C-australica_Contig_1000:11317..113381682586735.6051183-UTR-C-australica_Contig_1000:11317..11338Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1000 11318..11338 -
1682586735.6550598-UTR-C-australica_Contig_1000:13627..137341682586735.6550598-UTR-C-australica_Contig_1000:13627..13734Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1000 13628..13734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.6161067-CDS-C-australica_Contig_1000:11338..121111682586735.6161067-CDS-C-australica_Contig_1000:11338..12111Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 11339..12111 -
1682586735.6253266-CDS-C-australica_Contig_1000:12289..126911682586735.6253266-CDS-C-australica_Contig_1000:12289..12691Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 12290..12691 -
1682586735.6355166-CDS-C-australica_Contig_1000:12810..132391682586735.6355166-CDS-C-australica_Contig_1000:12810..13239Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 12811..13239 -
1682586735.6451645-CDS-C-australica_Contig_1000:13314..136271682586735.6451645-CDS-C-australica_Contig_1000:13314..13627Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 13315..13627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1000.5.1

>prot_C-australica_Contig_1000.5.1 ID=prot_C-australica_Contig_1000.5.1|Name=mRNA_C-australica_Contig_1000.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=639bp
MKDFLDWVPWGNQEKSSETTDSNQGSRCLPYTLTRQCCDTASVFYPELSI
DHILLLPRASFLPPEGKPSYHECCGSLQMASEVFFNNPSAQVLYVSSLEG
HQLRDTDVDEGYPRHLYSAVRGFLQERQGYSHVWLRDACLPPGMLSSELG
GVHMGALLCTHGSLSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEAC
LLTMTGASQHFYLECGGEGYYTDTTDQDQTIEEGVLEILTVMGLEGSGRA
VEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFC
ELWEMIQVGLTPIPAHEQLGLVRMLSFAVAVARCDAARALPAAGLAGVLE
EAAVPVKHGYGEWRNRRGGVHLDFWMKDLSPGDLEAILAKCTVQNNSDRA
HHRPVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAG
AEHKSLQSLTLTHNGLGRAGAECLGEMLMTNSSITFLDIRENDIGAAGMR
LLCRGLQRNASLRTLHAEDNSVGNDGVIAVTEAIMRGAGLKVLFLDGNAI
SDLGAKVMTVAVQQCRLLQLVSLRRNLLGNAMKAALLAAWAGREEQWIRC
DNGGGVFSDVDSDDSSENGVIVSPMKKRERETRDYLLL*
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mRNA from alignment at C-australica_Contig_1000:11318..13734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1000.5.1 ID=mRNA_C-australica_Contig_1000.5.1|Name=mRNA_C-australica_Contig_1000.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2417bp|location=Sequence derived from alignment at C-australica_Contig_1000:11318..13734- (Chrysoparadoxa australica CS_1217)
GAGAAAAGAGACATGGATGGTTGGAGGTGAAAGGAAGGAGGCAGGAGACC
AGGGATGATACGGGTTTCTCTTCAACGGCAGCTGCGGATGGAGTTATAAG
CCTGCTTATGAAGGACTTCTTGGATTGGGTGCCTTGGGGAAACCAGGAGA
AGAGCAGTGAGACCACGGATAGCAACCAAGGCTCGAGATGCCTCCCGTAC
ACCCTCACTCGCCAGTGCTGCGACACAGCTTCAGTCTTCTACCCCGAGCT
ATCCATCGACCACATTCTGCTCCTACCACGGGCATCCTTCCTGCCGCCAG
AGGGCAAGCCGTCCTACCATGAATGCTGCGGCAGTTTGCAGATGGCTTCA
GAGGTATTCTTCAACAACCCATCAGCACAGGTACTCTACGTGAGTAGTTT
GGAAGGACATCAACTGAGAGGTGCGTCTATGGCCTGCTGCCCAGCTCTGT
CCACTACCAAGGCCCTACTCACCGCCTGTACGCGCCTCTGTTCAGACACA
GACGTTGATGAAGGCTATCCCCGGCACCTGTACAGCGCTGTGAGGGGCTT
CTTGCAGGAGCGCCAGGGATATTCTCACGTATGGTTAAGAGACGCCTGCC
TGCCACCAGGGATGCTCTCATCGGAGCTTGGAGGCGTTCACATGGGCGCA
TTGCTGTGCACTCACGGGAGCTTGTCGGTGCCGCCATTATGCAAGAAGCA
GCACTGGTTCTACCAGAACGAGGAGGGCTTCTCTGACCTGCAGCTGTTCA
GCACCAACCCCTGGAGGGCGTTGGAAGCCTGCCTGCTTACCATGACAGGA
GCTTCCCAGCACTTCTACTTGGAGTGTGGGGGCGAGGGCTATTACACGGA
TACCACAGACCAGGACCAAACGATAGAGGAGGGAGTGCTGGAGATACTGA
CAGTAATGGGGTTGGAGGGCTCAGGTACCTAATGGATCTGATATGGTCTG
ATATGATATGATATGATCTGTGTGTGCCTCATGCCTTGCTGTGTAGACGC
CTGTACCTCACCTCACAGCACCACTGCCACGGGATTGCCACAGGTCGCGC
AGTTGAAGCTAACTGGAAGGGCCTGCTGGACACTCAGTTCCTCCTCACCA
AGGCCTGCACCGAAGTCTCTGGCTTCATTCAGGCTGGAGGCGCCCTCAAG
CAGGCAGTCTGCACGCTCAGCATCTCCGAGCAGCAGGCCCGGGAGTTCTG
CGAGCTCTGGGAGATGATCCAGGTCGGGCTCACCCCAATCCCAGCGCACG
AGCAGCTGGGCCTGGTCAGGATGCTTTCCTTCGCGGTGGCTGTGGCCAGG
TGTGATGCTGCGAGGGCGCTGCCTGCTGCGGGGCTTGCAGGAGTGTTGGA
GGAGGCTGCGGTGCCTGTGAAGCACGGTTATGGGGAGTGGCGGAACAGAC
GAGGGGGGGTTCACCTGGACTTTTGGATGAAGGATTTGTCCCCAGGTATG
GATGGCTTGGGCTGATAACCTCATTTTGAATGAATATTCAGCGTAGACGC
AGACTCCTATGTGCCTGTGACCCAGCATAATCATATCTGACTTTGAAAAA
TCGCAGCCCAAGTGTCGCAAGTGCCCAATCCCTCCAGCTTGTTGCTGACG
CACTGCCTGTGCCAACACCGCAGGTGATCTGGAGGCAATTCTGGCCAAAT
GCACTGTCCAGAACAACAGCGACCGAGCACATCACCGGCCTGTTGTCAAG
CTGACGGTTGGGAGCAGCCACACAGGTGGTGCGGGTATAGGCAGGTTCAT
GGGCCAGCACCCAGAGCTAAGAGAGGTGGAGGTGGAGTGGGAGGGTATGC
GAGACATCAGGTCACTGTGCTTGGCTGGGGCTGAGCACAAGTCTCTGCAG
AGCCTTACGCTGACACATAACGGATTAGGGAGAGCTGGGGCTGAGTGCCT
TGGGGAGATGCTCATGACCAACAGCAGTATAACCTTTTTGGACATTCGAG
AGAACGACATTGGCGCTGCAGGCATGAGGCTCCTCTGCCGCGGGCTGCAG
AGGAACGCGTCTCTGCGCACCCTGCACGCTGAGGATAACTCAGTCGGTAA
CGATGGTGTGATAGCGGTGACGGAAGCCATCATGCGAGGTGCAGGTCTCA
AGGTCCTGTTTCTCGATGGCAACGCTATCTCAGACCTGGGGGCAAAGGTC
ATGACTGTGGCCGTGCAGCAGTGCAGGTTGCTGCAGCTGGTGAGCCTGAG
GAGGAACCTGCTTGGGAATGCCATGAAGGCTGCATTGCTGGCTGCCTGGG
CAGGGAGAGAGGAGCAGTGGATCCGCTGTGATAACGGAGGCGGAGTGTTT
AGTGATGTTGACTCAGATGATAGCTCAGAGAATGGTGTCATTGTGTCACC
GATGAAGAAGAGGGAAAGGGAGACCAGGGACTACCTTCTATTGTGAAGGT
GAATTAATAGAATAGCC
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Coding sequence (CDS) from alignment at C-australica_Contig_1000:11318..13734-

>mRNA_C-australica_Contig_1000.5.1 ID=mRNA_C-australica_Contig_1000.5.1|Name=mRNA_C-australica_Contig_1000.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1917bp|location=Sequence derived from alignment at C-australica_Contig_1000:11318..13734- (Chrysoparadoxa australica CS_1217)
ATGAAGGACTTCTTGGATTGGGTGCCTTGGGGAAACCAGGAGAAGAGCAG
TGAGACCACGGATAGCAACCAAGGCTCGAGATGCCTCCCGTACACCCTCA
CTCGCCAGTGCTGCGACACAGCTTCAGTCTTCTACCCCGAGCTATCCATC
GACCACATTCTGCTCCTACCACGGGCATCCTTCCTGCCGCCAGAGGGCAA
GCCGTCCTACCATGAATGCTGCGGCAGTTTGCAGATGGCTTCAGAGGTAT
TCTTCAACAACCCATCAGCACAGGTACTCTACGTGAGTAGTTTGGAAGGA
CATCAACTGAGAGACACAGACGTTGATGAAGGCTATCCCCGGCACCTGTA
CAGCGCTGTGAGGGGCTTCTTGCAGGAGCGCCAGGGATATTCTCACGTAT
GGTTAAGAGACGCCTGCCTGCCACCAGGGATGCTCTCATCGGAGCTTGGA
GGCGTTCACATGGGCGCATTGCTGTGCACTCACGGGAGCTTGTCGGTGCC
GCCATTATGCAAGAAGCAGCACTGGTTCTACCAGAACGAGGAGGGCTTCT
CTGACCTGCAGCTGTTCAGCACCAACCCCTGGAGGGCGTTGGAAGCCTGC
CTGCTTACCATGACAGGAGCTTCCCAGCACTTCTACTTGGAGTGTGGGGG
CGAGGGCTATTACACGGATACCACAGACCAGGACCAAACGATAGAGGAGG
GAGTGCTGGAGATACTGACAGTAATGGGGTTGGAGGGCTCAGGTCGCGCA
GTTGAAGCTAACTGGAAGGGCCTGCTGGACACTCAGTTCCTCCTCACCAA
GGCCTGCACCGAAGTCTCTGGCTTCATTCAGGCTGGAGGCGCCCTCAAGC
AGGCAGTCTGCACGCTCAGCATCTCCGAGCAGCAGGCCCGGGAGTTCTGC
GAGCTCTGGGAGATGATCCAGGTCGGGCTCACCCCAATCCCAGCGCACGA
GCAGCTGGGCCTGGTCAGGATGCTTTCCTTCGCGGTGGCTGTGGCCAGGT
GTGATGCTGCGAGGGCGCTGCCTGCTGCGGGGCTTGCAGGAGTGTTGGAG
GAGGCTGCGGTGCCTGTGAAGCACGGTTATGGGGAGTGGCGGAACAGACG
AGGGGGGGTTCACCTGGACTTTTGGATGAAGGATTTGTCCCCAGGTGATC
TGGAGGCAATTCTGGCCAAATGCACTGTCCAGAACAACAGCGACCGAGCA
CATCACCGGCCTGTTGTCAAGCTGACGGTTGGGAGCAGCCACACAGGTGG
TGCGGGTATAGGCAGGTTCATGGGCCAGCACCCAGAGCTAAGAGAGGTGG
AGGTGGAGTGGGAGGGTATGCGAGACATCAGGTCACTGTGCTTGGCTGGG
GCTGAGCACAAGTCTCTGCAGAGCCTTACGCTGACACATAACGGATTAGG
GAGAGCTGGGGCTGAGTGCCTTGGGGAGATGCTCATGACCAACAGCAGTA
TAACCTTTTTGGACATTCGAGAGAACGACATTGGCGCTGCAGGCATGAGG
CTCCTCTGCCGCGGGCTGCAGAGGAACGCGTCTCTGCGCACCCTGCACGC
TGAGGATAACTCAGTCGGTAACGATGGTGTGATAGCGGTGACGGAAGCCA
TCATGCGAGGTGCAGGTCTCAAGGTCCTGTTTCTCGATGGCAACGCTATC
TCAGACCTGGGGGCAAAGGTCATGACTGTGGCCGTGCAGCAGTGCAGGTT
GCTGCAGCTGGTGAGCCTGAGGAGGAACCTGCTTGGGAATGCCATGAAGG
CTGCATTGCTGGCTGCCTGGGCAGGGAGAGAGGAGCAGTGGATCCGCTGT
GATAACGGAGGCGGAGTGTTTAGTGATGTTGACTCAGATGATAGCTCAGA
GAATGGTGTCATTGTGTCACCGATGAAGAAGAGGGAAAGGGAGACCAGGG
ACTACCTTCTATTGTGA
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