mRNA_C-australica_Contig_1000.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1000.4.1
Unique NamemRNA_C-australica_Contig_1000.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1000.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1000contigC-australica_Contig_1000:8259..11242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1387
Hectar predicted targeting categoryother localisation
Exons11
Cds size609
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1000.4.1prot_C-australica_Contig_1000.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1000 9153..10939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.4666204-UTR-C-australica_Contig_1000:8258..82831682586735.4666204-UTR-C-australica_Contig_1000:8258..8283Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1000 8259..8283 +
1682586735.4749298-UTR-C-australica_Contig_1000:8435..86511682586735.4749298-UTR-C-australica_Contig_1000:8435..8651Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1000 8436..8651 +
1682586735.484395-UTR-C-australica_Contig_1000:8773..88541682586735.484395-UTR-C-australica_Contig_1000:8773..8854Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1000 8774..8854 +
1682586735.4938715-UTR-C-australica_Contig_1000:8999..91521682586735.4938715-UTR-C-australica_Contig_1000:8999..9152Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1000 9000..9152 +
1682586735.576176-UTR-C-australica_Contig_1000:10939..112421682586735.576176-UTR-C-australica_Contig_1000:10939..11242Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1000 10940..11242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.502907-CDS-C-australica_Contig_1000:9152..91661682586735.502907-CDS-C-australica_Contig_1000:9152..9166Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 9153..9166 +
1682586735.5116327-CDS-C-australica_Contig_1000:9255..93461682586735.5116327-CDS-C-australica_Contig_1000:9255..9346Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 9256..9346 +
1682586735.5207324-CDS-C-australica_Contig_1000:9594..96781682586735.5207324-CDS-C-australica_Contig_1000:9594..9678Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 9595..9678 +
1682586735.529727-CDS-C-australica_Contig_1000:9998..101151682586735.529727-CDS-C-australica_Contig_1000:9998..10115Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 9999..10115 +
1682586735.5386643-CDS-C-australica_Contig_1000:10204..102771682586735.5386643-CDS-C-australica_Contig_1000:10204..10277Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 10205..10277 +
1682586735.5475097-CDS-C-australica_Contig_1000:10412..104781682586735.5475097-CDS-C-australica_Contig_1000:10412..10478Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 10413..10478 +
1682586735.5572228-CDS-C-australica_Contig_1000:10694..108181682586735.5572228-CDS-C-australica_Contig_1000:10694..10818Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 10695..10818 +
1682586735.5668154-CDS-C-australica_Contig_1000:10899..109391682586735.5668154-CDS-C-australica_Contig_1000:10899..10939Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 10900..10939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1000.4.1

>prot_C-australica_Contig_1000.4.1 ID=prot_C-australica_Contig_1000.4.1|Name=mRNA_C-australica_Contig_1000.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=203bp
MLQSRYMMGRGAPTGHSGDEHTWWSEIQPVTVPQQEKALQICKAPAGGGE
GAHWTRFETTKLEVSQQVLGHCVTFLRVRAHLFPLEPLDFSQLGEVLAAC
VKVYQIQEGKAQASGDGMITGGGPADGTSAAAITGYEFLSASTSYIVEGL
LAALYDLVSATKGAENARLSAALMPSLEALINETKPFLSRAARRIMEKLS
AN*
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mRNA from alignment at C-australica_Contig_1000:8259..11242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1000.4.1 ID=mRNA_C-australica_Contig_1000.4.1|Name=mRNA_C-australica_Contig_1000.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2984bp|location=Sequence derived from alignment at C-australica_Contig_1000:8259..11242+ (Chrysoparadoxa australica CS_1217)
GAGTGCGCTTACGTTCATTACGCAGGTATGACAAGACAGGCATGCATGAG
CCAAGCCTGGCTTAGCTTACCTTCTTATGTGACCGAGCCAGGCCCTGACT
AGTAGCATCAGGTAGCACACTTGTAGTAGCTGCATACTAGTAGTAGTTGT
ATCTTACGAAACGCTGTCCCATCACAGGTAGCTTGCAGTCGTGATGGTGC
ACTGGCCTTAGTGGACTGCAGGGTACTGGAACACTTAACGGAAAGCAGCT
TGCTTGCTGCTCCTGCTGCTCCTGCTGCTGCTGGTGCTGGGGCTGGTGCA
GTTGCAGGGGGTGAGCACTCATGGCTACAGGCATTGAGGTTATTAGAGGC
TACAGTCTCAAGCTTGCCTGACAATGAGAAAGTCATCACCCAGGTACGCT
GGTGACGCGTGCTCAGATGAGTGAGCGCACACTGAAAGATGATTGAGAGC
AACCTCCAGTGATGTGTAAGAGACACCCATACTCTTCTGGCCCTTGACCT
TTTGGCACTCGTCAGGTATTGGAGCTCTTGCGGCATCACCACAAGCTCTG
CAGCCACTTACTCAAGCTGAGAAGCCCAAGTTGCACAGGGCTGCAGGTGG
GAACTGCTTGACTGTAACAAGCGCCTGCACTGCACCAAACCGCACAAACG
CTCTTCTGCTCACTTATTTTCCCTTTGCTTGGCTTGTGCTGCTCCTCTCT
CTCACACAACGTAATGCAACACTCTTCTTTTCATGCCACAGGCTGCTGGA
TGCGTCGTAAGCCTGCTTGGTCACTGTACCAAGTCACCCTATGAGGGCCT
CTATCAAGAGAGGCTGGGCAGATACAGCGATAAGCTCAGCGCCCAGGTCA
AGGGATTGTTACTGAGGCTTGGGAAGTATCCCTACCCAGCTTGGATGCTG
CAGAGCCGGTAATGATATCATGGCACCGGCAAATCATAGCCATGCCATAG
CACTGGCAACTGCATCTAACACCACCATGGTTGGTTGCCTGTGTCAGGTA
TATGATGGGAAGGGGAGCTCCCACAGGTCACTCTGGTGATGAACACACTT
GGTGGAGTGAAATACAGCCTGTCACTGTTCCGCAGCAGGTGCGTCGAGAG
ATGCATTCGTGTTATGCCGTCCCGTCATGCACTTGTTGCTCCCCCTGCCA
GTGATGTCTGCTTATCGCTACAACAGACAGCCATTGCAACTCCTCAATGT
TTTGTTGCAATGAAATGTATGCATGCTGGCAGACCCCCAGTCACCAATGG
CCAAATGGCTCGTTTGCCTTTGCCTTTGCCTTGAGCCTGAGGTAGCACTG
AAGTATTATTATTGTGGACTCTCTCTCTCATCTCAGGAGAAGGCCCTGCA
GATCTGTAAAGCACCAGCAGGTGGGGGGGAGGGAGCGCATTGGACTCGCT
TTGAGACGACAAAGCTGGAGGTGAAGAACCTAGTGTTGACTGGTTTGACA
ACTCTTGATTCTTTCAACGGCCCTCCACTCGATTGAATGATTATTGATTG
GTCTTTGAATGACTGATGCTGATGCGTAGAGCCTTGCTTTTTTAAGATGA
TGCTGTGCGTTCGTTTGAGTGAATGCTGGGTCATCAGTCTTGATGGCCAT
GATGTAGCGTAGTGTGACCAAACTGCGTCTTCCATGTCTTGAGTGCTTGG
CTTGAGCTTGCGGGCGACTGGGATCAGCTGGCTTGTTCTCTCACTTCACA
CTTTTGTGTTTGCACTTCCACGATGCTCCTGCTCCTCCAGGTTTCACAAC
AGGTTCTCGGGCATTGCGTGACTTTCTTACGCGTCCGTGCCCATCTCTTC
CCATTGGAGCCTCTGGACTTCTCTCAGCTCGGTGAAGTGCTGGCAGCCTG
TGTGAAGGCAAGATGAGGAAAAGCTGCTTGGCTGCACTTGCCCCTAATTA
TGTCATCTCATACCACACTCACTCACAGCACCCACCTCTCACTCAGGTGT
ACCAGATACAAGAGGGCAAAGCACAAGCATCAGGGGATGGCATGATTACT
GGGGGAGGGCCAGCTGATGGTGAGGAGCCTCCCCCTTAAAAGACTCCACC
TTGCTATTGAGTTGCATGAGTTGCATGGATGCTTTCATGTTGAGTGCGTT
GACCTTCACTCATCAGAATGCTTCGCATCGCTCCGCATTGCTTTGCTCTC
TCAGGAACTTCTGCTGCAGCAATTACAGGTTATGAGTTTTTGTCGGCAAG
CACCAGCTACATAGTTGAGGGTACGTTTGTGTAACTCTTACCACTGCTCA
CAACCTTACGTTGCTCCCAAGTTAATCTCATTTGGCTTAAGTTATGATTT
ATCTTTTTGCTTTTGCTTGCTAGCTTACTGGACAAGATGCCTCCTCCCCT
CAGTTAATCACTCACTCGCATTCAGCCACGACCACTACCACCAGTGCTAA
CTTTCGCTTGACCCATTGATCCTTTTCCATGAACAGGGCTACTAGCTGCT
CTCTATGACTTGGTTTCTGCAACAAAAGGAGCCGAGAATGCCAGGCTCTC
AGCTGCCCTTATGCCCTCATTGGAGGCCCTTATCAATGAGACTAAGCCCT
TCCTTAGCAGGTCAGTTGCATCACTTGCATCATTTGCATCTAACTTGTCT
TCTCTTGCTCACTGGCTTGACTTGCTCTTGCACTTCCTCAGAGCTGCGAG
AAGGATCATGGAGAAGCTCTCAGCTAACTGAGAACTGATGTGGGAGAGCT
AGCTCAACACAGGCAAACCTGCTCAACCTGCTGAACTGCTGGATGGGGAA
AGCTATGTCATGGGGCTGTCCATGCTGCGACTCTGCTTCTGTTTTGCGTG
TTCATCGGCTTGCTTGTCTTGTCACGTATCATGCTTTATGACAGTGCACT
GCACAGGTGCAGGATATGCAACTGCACAAGCTACAGAGATAGGAGGGGGG
GGAGGAATCCTCACATATTTTCTTTTCTAGATCCTAGATAACACTGGTGA
TGTGACACTAGGCAGGCTAGGCTTAAGCTTTATT
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Coding sequence (CDS) from alignment at C-australica_Contig_1000:8259..11242+

>mRNA_C-australica_Contig_1000.4.1 ID=mRNA_C-australica_Contig_1000.4.1|Name=mRNA_C-australica_Contig_1000.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=609bp|location=Sequence derived from alignment at C-australica_Contig_1000:8259..11242+ (Chrysoparadoxa australica CS_1217)
ATGCTGCAGAGCCGGTATATGATGGGAAGGGGAGCTCCCACAGGTCACTC
TGGTGATGAACACACTTGGTGGAGTGAAATACAGCCTGTCACTGTTCCGC
AGCAGGAGAAGGCCCTGCAGATCTGTAAAGCACCAGCAGGTGGGGGGGAG
GGAGCGCATTGGACTCGCTTTGAGACGACAAAGCTGGAGGTTTCACAACA
GGTTCTCGGGCATTGCGTGACTTTCTTACGCGTCCGTGCCCATCTCTTCC
CATTGGAGCCTCTGGACTTCTCTCAGCTCGGTGAAGTGCTGGCAGCCTGT
GTGAAGGTGTACCAGATACAAGAGGGCAAAGCACAAGCATCAGGGGATGG
CATGATTACTGGGGGAGGGCCAGCTGATGGAACTTCTGCTGCAGCAATTA
CAGGTTATGAGTTTTTGTCGGCAAGCACCAGCTACATAGTTGAGGGGCTA
CTAGCTGCTCTCTATGACTTGGTTTCTGCAACAAAAGGAGCCGAGAATGC
CAGGCTCTCAGCTGCCCTTATGCCCTCATTGGAGGCCCTTATCAATGAGA
CTAAGCCCTTCCTTAGCAGAGCTGCGAGAAGGATCATGGAGAAGCTCTCA
GCTAACTGA
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