mRNA_C-australica_Contig_1000.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1000.2.1
Unique NamemRNA_C-australica_Contig_1000.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A7R9UAR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAR1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.670e-26
Identity = 143/538 (26.58%), Postives = 244/538 (45.35%), Query Frame = 1
Query:   25 VRGAIMELLLKSINAPGPNLSHVLLGLA--DTVKAVSAGLGGRFTVSEGKLGAGSSNCLEAVLNLLAQPGFVDSS---PVLAEQCMQLVFRLCTTRGMALPVLQLLRGNSIDFFYSHLRDLVGSGRARCRDSFARH-GMAWLLQGVAVELHVCCTGEPPYPS--KARRLLALL-------------YGGHADDAALLQQRMCFMLEVLADMDI-DEAGPVGS--PDGRTMEAIRECSKP----LETG-----GGGSQRQFEVIDIKALR-----------------ALQRAGVPAQGDDSSRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLL----VDNAQVARQGSGSSGKRILVSLLSAALKKICAHPN-ADVVLVEPIAHSCLSIMGTLRGLGA-AGVLSIGEG--QALLQHMLEAICARGGAGGSKMLCAHLFGCLLHFLQHSQAP--YVAGGDLSSVGAVGVAYEDLVEAHALCAETQQQYSTQLEPFIDRLVEMLGRDTTCGVPVCESLAFSLLAALMR 1458
            +R  I++L++++++AP PNLSH LLGLA  D+    SAG G    V          +C +A+L +L +PG V+S+   P +AE+  +++ +L   R    PV ++LR  S+DFF S L  +          SF R   +  +L+  +++LH     + P      A RL+ +L             + G  + +     + C +L +L  + + +EAG   +  P   T + +  CS+      E G     G G  ++F  ID++AL                  AL   G+    +  S +  +L WA+ WN F  R  +  +     R +VEV + SC  LL    + +  V    +  SG+ +L+  L      IC H + ADV L+EP + + LS++G++R     A V S+G G  Q LL+ + +A+    G G S+    +L   L+  L+ +Q P   +  G+    G   ++         L AE ++  +  L   ++ L  +L +D      V +S+A S L  ++ 
Sbjct:  559 LRELILDLIIENMDAPFPNLSHSLLGLATADSAGVTSAGRGLGPPVP-----GCPRHCFDAILEML-EPGGVNSAFSDPKVAEKAFRVILQLLQLRLE--PVSRILRSRSVDFFPSMLMYVASWEYDGLASSFFRRLCLGHVLRACSIDLHARGVSDDPDVGGEAAARLVHMLLDVAPESLGRDTSFSGDLEGSRTNLAQHCLLLRLLHRIPLLEEAGLASARAPSPITRDILESCSRTGGVAAEFGVSSDLGFGLDQRFRFIDLEALAEHLYQVLPTQQPAGQGLALTPGGLAGASNGES-MRSALNWANAWNEFSGRALASGYALECHRVLVEVVMTSCRSLLHPTILGSVSVPSSRTLDSGRLLLLLALGLG-NHICDHVDRADVSLLEPPSRALLSVVGSMRLPDPRASVESLGPGRTQQLLRDLCKALLH--GQGSSEAFRGNLTAALVQCLRLTQGPSALIGEGEQGEQGGHSIS--------RLLAENRRLNNQVLSSVVEPLTHVLMKDALSASLVYQSVAVSALTLMLE 1076          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: D7FNG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG5_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 6.820e-23
Identity = 77/252 (30.56%), Postives = 122/252 (48.41%), Query Frame = 1
Query:  778 RIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLLVDNAQVARQGSGSSGKRILVSLLSAALKKICAHPNADVVLVEPIAHSCLSIMGTLRGLGAAGVLSIGEGQALLQHMLEAICARGG----------AGGSKMLCAHLFGCLLHFLQHSQ-------------APYVAGGDLSSVG--AVGVAYEDLVEAHALCAETQQQYSTQLEPFIDRLVEMLGRDTTCGVPVCESLAFSLLAALMR 1458
            R+  +L WA  WN     +ASQSHLC +WRQV+EV+  +   LL    +   +   S  +R+L +LL   L+K+     AD  L++P+  +CLS+ G +R LGA   L + E + L+  +L+ +    G            GSK   A L+GCL+H L+H+Q             AP       ++ G  A  +++  L E H L  + ++    Q+EP    L  ML  D+     V + L  SLL++++ 
Sbjct:    4 RVRTALNWAIHWNIHTDNLASQSHLCQAWRQVLEVAFINAPQLLFGPREDPSKAVAS--RRLLPALLLGMLRKLTGMGGADDKLLKPLGRACLSVAGVMRDLGAWAPLQLAESKQLISSLLQCLAGTKGLVASSMENTPGDGSKTYRAFLYGCLIHLLEHTQGEPHADWFLGVRAAPGAGSAAETAAGRPATSLSHAALREGHRL--QNRELLREQIEP----LAHMLNEDSRYAPDVTQCLGLSLLSSIVN 247          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A6H5L557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L557_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.490e-19
Identity = 93/327 (28.44%), Postives = 141/327 (43.12%), Query Frame = 1
Query:  592 MDIDEAGPVGSP-DGRTMEAIRECSKPLETGGGGSQ---RQFEVIDIKALRALQRAGVPAQG----------DDSSRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLLVDNAQVARQGSGSSGKRILVSLLSAALKKICAHPNADVVLVEPIAHSCLSIMGTLRGLGAAGVLSIGEGQALLQHMLEAICARGGAG--------GSKMLCAHLFGCLLHFLQHSQAPYVA---GGDLSSVGAVGVAYEDLVEAHALCAETQQQYSTQ-------------LEPFIDRLVEMLGRDTTCGVPVCESLAFSLLAALMR 1458
            +++   GP  +P D      +   + PL   GG ++     F +ID   L  L RA + ++G          +   R+  +L WA  WN     +ASQSHLC +WRQV+EV+  S   LL    +   +   S  +R+L +LL   L+K+     AD  L++P+  +CLS+        A GV    E   L+   +     RG A         GSK   A L+GCL+H L+H+Q    A   GG  ++ GA G A E      A     Q++                 L   I+ L  ML  D+     V + L  SLL++++ 
Sbjct:   86 IELGGCGPARNPGDSGVRSLLIRAAIPLPAPGGCAEAGGEDFRIIDAAHLHELLRAEIASRGLGAEGATLSREMDERVRTALNWAIHWNIHTDNLASQSHLCQAWRQVLEVAFISAPQLLFGPREDPSKAVAS--RRLLPALLLGMLRKLTGMGGADDKLLKPLGRACLSV-------AAGGV----EAADLVSPAVPGWYGRGXASSKENTPGDGSKTYRAFLYGCLIHLLEHTQGEPHADWFGGVRAAPGA-GSAAETATGRPATSLVRQKRGMAXXXXXXXXEHAGELLREQIEPLAHMLNEDSRYAPDVTQCLGLSLLSSIVN 398          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A0L0DLW1_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DLW1_THETB)

HSP 1 Score: 101 bits (252), Expect = 6.150e-19
Identity = 146/557 (26.21%), Postives = 225/557 (40.39%), Query Frame = 1
Query:   28 RGAIMELLLKSINAPGPNLSHVLLGLADTVKAVSAGLGGRFTVSEGKLGAGSSNCLEAVLNLLAQPGFVDSSPVLAEQCMQLVFRLCTTRGMALPVLQLLRGNSIDFF---YSHLR----------DLVGSGRARCRDSFARHGMAWLLQGVAVELHVCCTGEPPYPSKARRLLALLYGG----------------------HADDAALLQQRMCFMLEVLADM-DIDEAGPVGSPDGRTMEAIRECSKPLETGGGGSQRQFEVIDIKAL-RALQRA----------------GVPAQGDDSSRIAHSL-QWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLL-----------VDNAQVARQGSGSSGKRILVSLLSAAL----KKICAHPNADVVLVEPIAHSCLSIMGTLRGLGAAGVLSIGEGQALLQHMLEAICARGGAGGSKMLCAHLFGCLLHFLQHSQAPYV---------AGGDLSSVGAVGVAYEDLVEAHALCAETQQQYSTQLEPFI---DRLVEMLGRDTTCGVPVCESLAFSLLAALM 1455
            R A++ELLL S+NAP P+++H+L G       +  GL     VS       + NCL  +L L A P FV   P LAE   +LV  L +T   +   LQLLR   +D+F   Y+ LR          D+      R R +      +W+L+ +A+ELHV       +  +A RLL  LY                        H + + + Q RM  +LEVL  + ++DE  P   P     E +   +      G       E  D+ AL R L  A                GV  +  D++ + H L   A++WN + +R  ++  + T+W Q+V  +L  C  LL           V ++ +   G G S K +  S+ S  L    K +    ++      P+ H    +   LRG+ AA          LL+H           G  ++   +L+  L+ +LQ +Q             AG  L+   A G   E    A AL +      S   +      + L+++L RD + G  V ++LAFS L  L+
Sbjct: 1011 REAVLELLLVSLNAPYPSMTHLLCGFE-----LERGLAASRLVSI------AHNCLNILLQLAADPEFVVYFPTLAEGTARLVHALVSTPATSTATLQLLRSRDVDYFEGAYAVLRTAYTIEPELPDVSAGPVLRLRYT------SWILKSIALELHVAGGPNTVHRPQAVRLLTALYSSSEPRQRGEPGALPSFWDAAASAHGEASGVEQARMK-LLEVLYSLQEVDEVEPP-FPSIPLDEGLVATTISKNAAG------VECFDVPALYRVLMAAPHLRAGMMPGTGMSEMGVGDESSDAASVVHQLVAAAADWNGYHERFMARVEVMTAWSQIVLATLARCYELLGSESRESILFMVLDSLLFLLGRGVSAKAVARSMTSVVLAILSKLLQVQVSSRQTTHVPVNH----LHALLRGILAA----------LLRH-----------GSDQVQRGNLYAALMAYLQLTQPDVTLSAKHLGEDAGSSLNE-SAWGEP-ESRAPAEALASRRSAIASGNAKIVAAAGEALLDVLCRDASHGKQVWQALAFSALNVLV 1515          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A7S4W5F5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W5F5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.780e-16
Identity = 96/375 (25.60%), Postives = 151/375 (40.27%), Query Frame = 1
Query:   25 VRGAIMELLLKSI-NAPGPNLSHVLLGLADTVKAVSAGLGGRFTVSEGKLGAGSSNCLEAVLNLLAQPGFV--DSSPVLAEQCMQLVFRLCTTRGMA-----------LPVLQLLRGNSIDFFYSHLRDLVGSGRARCRDSF---------------------------ARHGMAWLLQGVAVELH-----------------VCCTGEPPYPSKARRLLALLYGGHADDAALLQQRMCFMLEVLADMDIDEAGPVGS---PDGRTMEAIRECSKPLETGGGGSQRQFEVIDIKALRALQRAGVPAQGDDSSRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLLVDNAQVARQGSGSSGKRIL 966
            VR  I++LLL ++ +A   NLSH LLGL+ +  A                   S NCL+AVL+LL+   FV    +   A +C +L++R+C+                L  +  LR +  DF+  HL       +      F                             H +AWLL+G+AVELH                 +  T   P P + +++L +L+    +           ML  L D+ + ++  +           E ++E    L TG     + +EV+D+  L +  R    A GD+  ++A  LQWAS WN +V    + SHL T+W  V+  +L  C  LL  +  +    +  S  RIL
Sbjct:  581 VRDVILDLLLSNVGSADDQNLSHALLGLSGSDGATR-----------------SKNCLDAVLDLLSNTDFVLNPQTSSYAAKCYELIYRVCSIANSVNQSSSRVWSAKLDFMSKLRNS--DFWRKHLLRFFAPSQLSSVSLFHGIVSTANLYDQHQGNQISPLLSRNIDVLHSIAWLLRGIAVELHSLMGLSASHSPCYVRTNIQPTTVAPQPRQCQKILHILFSNPHE----------VMLNALIDLPLHQSDTITQFLDVTAPARELVQESCATL-TGAREVAKGYEVVDVDKLLSNVRN---ASGDE--KVA--LQWASAWNAYVTYSCASSHLSTAWSMVLGTALVVCRPLLFGDEHILDSSTTLSESRIL 918          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A7S1YVX3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YVX3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.940e-16
Identity = 96/375 (25.60%), Postives = 151/375 (40.27%), Query Frame = 1
Query:   25 VRGAIMELLLKSI-NAPGPNLSHVLLGLADTVKAVSAGLGGRFTVSEGKLGAGSSNCLEAVLNLLAQPGFV--DSSPVLAEQCMQLVFRLCTTRGMA-----------LPVLQLLRGNSIDFFYSHLRDLVGSGRARCRDSF---------------------------ARHGMAWLLQGVAVELH-----------------VCCTGEPPYPSKARRLLALLYGGHADDAALLQQRMCFMLEVLADMDIDEAGPVGS---PDGRTMEAIRECSKPLETGGGGSQRQFEVIDIKALRALQRAGVPAQGDDSSRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLLVDNAQVARQGSGSSGKRIL 966
            VR  I++LLL ++ +A   NLSH LLGL+ +  A                   S NCL+AVL+LL+   FV    +   A +C +L++R+C+                L  +  LR +  DF+  HL       +      F                             H +AWLL+G+AVELH                 +  T   P P + +++L +L+    +           ML  L D+ + ++  +           E ++E    L TG     + +EV+D+  L +  R    A GD+  ++A  LQWAS WN +V    + SHL T+W  V+  +L  C  LL  +  +    +  S  RIL
Sbjct: 1531 VRDVILDLLLSNVGSADDQNLSHALLGLSGSDGATR-----------------SKNCLDAVLDLLSNTDFVLNPQTSSYAAKCYELIYRVCSIANSVNQSSSRVWSAKLDFMSKLRNS--DFWRKHLLRFFAPSQLSSVSLFHGIVSTANLYDQHQGNQISPLLSRNIDVLHSIAWLLRGIAVELHSLMGLSASHSPCYVRTNIQPTTVAPQPRQCQKILHILFSNPHE----------VMLNALIDLPLHQSDTITQFLDVTAPARELVQESCATL-TGAREVAKGYEVVDVDKLLSNVRN---ASGDE--KVA--LQWASAWNAYVTYSCASSHLSTAWSMVLGTALVVCRPLLFGDEHILDSSTTLSESRIL 1868          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A165IAB1_EXIGL (Uncharacterized protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165IAB1_EXIGL)

HSP 1 Score: 92.4 bits (228), Expect = 5.700e-16
Identity = 139/550 (25.27%), Postives = 224/550 (40.73%), Query Frame = 1
Query:   25 VRGAIMELLLKSINAPG---PNLSHVLLGLADTVKAVSAGLGGRFTVSEGKLGAGSSNCLEAVLNLLAQ--PGFVDSS------------PVLAEQCMQLVFRLCTTRGMALPVLQLLRGNSIDFFYSHL-----RDLVGSG----------------RARCRDSFARHGMAWLLQGVAVELHVCCTGEPPYPSKARRLLALLYGGHADD--------------AALLQQRMCFMLEVLADMDIDEAGPVGSPDGRTMEAIR--ECSKPLETGGGGSQRQFEVIDIKALRALQ---RAGVPAQGDDSSRIAHSLQWASEWNTFVQRMASQSHL----CTSWRQVVEVSLHSCGGLLVDNAQVARQGSGSSGKRILVSLLSAALKKICAHPNADVVLVEPIAHSCLSIMGTLRGLGAAGVLSIGEGQALLQHMLEAICARGGAGGSKMLCAHLFGCLLHFLQHSQAPYVAGGDLSSVGAVGVAYEDLVEAHAL---CAETQQQYSTQLEP--------FIDRLVEMLGRDTTCGVPVCESLAFSLLAALMR 1458
            ++ A++ LL++   APG   P+++H LLG            GG   + + +      +CL  +L  L+Q  P   +              PVLAE+  +LV +LCT    A P L+ LR    DFF  HL     R + G G                +A  R +      AW+L+ VA+ELHV    E P   +A RLL L++G   ++              A+    R+   L+ LA   +D   P    + +    +    C +P E G        +V D+ AL AL     A +P  G    ++    ++  E      R  S  H       +W +VV+V+L         +   AR     + + +L  +L A    +      + V  EP+A + ++++  LR             Q +LQ  L A     GA  +  L A LF  +L  +    AP +  G+L S     + Y  LVEA        ++++   T+LE         F+DRL+  + +D   G  V +++AF+LL +L+R
Sbjct:  881 IKSAVVGLLIQG-TAPGCAAPSVAHFLLGY-------DCHAGGEAILQDPEAAHARISCLHVILAALSQGVPRLDNQHHRTVGTPLSVLVPVLAEKFYRLVLQLCTHPLTAAPTLRYLRTRE-DFFARHLAAVPARIVTGGGGEGDGMVVYEDGSSVQQAGARATAFLRARAWILELVALELHVLTDPEHPQLQRAARLLELIFGTDTEEQGSGLQEEFLQPFVASRHASRVVEALQALAMEWVDATQPEQGVELQVYRGLNFDTCLRPDEAG-------CDVYDVGALLALLGSVTATIPI-GGGRDQLRRETRFVLETVAAENRARSLQHARGLGYAAWARVVQVAL---------SKGFARLLPPEAREAVLFDVLPALPGPL---RRMEPVAAEPLAQTLVALVARLR--------EDRRHQTVLQASLGAEDVGAGALPADRLLA-LFRAVLDCVMVPGAPGMVRGNLYSTL---IHYLHLVEAEKALHRATDSEEDARTELEAGTLAIVNAFVDRLIPEICKDAIDGAEVWKTVAFTLLDSLVR 1389          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A8B8AJV1_CRAVI (nuclear pore complex protein Nup205-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8AJV1_CRAVI)

HSP 1 Score: 86.7 bits (213), Expect = 3.620e-14
Identity = 128/554 (23.10%), Postives = 227/554 (40.97%), Query Frame = 1
Query:   28 RGAIMELLLKSINAPGPNLSHVLLGLADTVKAVSAGLGGRFTVSEGKLGAGSSNCLEAVLNLLAQ-------PGFVDSSPVLAEQCMQLVFRLCTTRGMALPVLQLLRGNSIDFFYSHLRDLVGSGRARCRDSFARHGMAWLLQGVAVELHVCCTGEPPYPSKARRLLALL---------------------YGGHADDAA----LLQQRMCF--------MLEVLADMDIDEA-GPVGSPDGRTMEAIRECSKPLETGGGGSQRQFEVIDIKAL-RALQRAGVPAQGDDS--------SRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGG----------LLVDNAQVARQGSGSSGKR---------ILVSLLSAALKKICAHPNADVVLVEPIAHSCLSIMGTLRGLGAAGVLSIGEG---------QALLQHMLEAICARGGAGGSKMLCAHLFGCLLHFLQHSQAPYVAGGDLSSVGAVGVAYEDLVEAHALCAETQQQYSTQLEPFIDRLVEMLGRDTTCGVPVCESLAFSLLAALM 1455
            R  ++++LL+S++ P PNL+H+LLG  D  K+V+  L        G LG+    CL AVL+LL +       P  +  +P LAE   +L++ L   +  + P L+ LR  + DF Y  L+ L  + +   R        +WL++ +A+EL +         S  +RL+  L                     Y   AD +     L Q    F        +L +L ++D  +   P    +      I +  + +ET    ++++    D++ L R L       QG+            + + LQ     N   Q + S+     +WRQV EV L  C            +L++  Q  +Q                 I+++L++   +  C  P     + E  A   L+++ +  GLG +       G         Q +L+ +++ I     +GG + + A+L+G LL++LQ +Q P          G  GV    L +AH+   + +++    +  + D  ++M+ RD   G  V   LA S+L  ++
Sbjct:  254 RQYLLQVLLRSLDQPAPNLAHLLLGF-DIRKSVAKTL----LQDPGILGS-PKTCLHAVLSLLERGVGSHSGPSCLRDTPRLAELAYKLIYLLAANKETSTPTLRYLR-TTRDFLYRQLQHLPFTQQFYKRPVMV--AQSWLMKLIAIELRLTALNRQR--SHTQRLMRALLDDGSEGHTVFQPVGEDTDLGYDRFADQSTQMSYLSQTNTPFRSRQVRRKLLGLLDEVDFSQRYPPTMHLEFFDQSLIEQAIQSVETR---TEQEVLYCDVRRLHRVLMNELNNYQGNIMVTQRPRVLEEVENILQHVVRRNRIRQELYSKQQALEAWRQVTEVLLTGCPEDHLTPQDRQTVLLELLQELQQKVTEEDTLTELTAPVAGIILTLMTNLRQCFCPDP-----VTEDEASQVLTLLDSTGGLGQSAAWGQKAGSRTQFASSLQLVLRGVIDHILL--SSGGQQRVRANLYGALLYYLQIAQKPKSLTHSDPESGGDGVGKRILADAHSEYEQLRRENVATILSYGDNFMDMVCRDACDGHDVGRMLALSVLDTIL 786          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: A0A7S4I8C0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I8C0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.220e-14
Identity = 92/340 (27.06%), Postives = 131/340 (38.53%), Query Frame = 1
Query:  181 SSNCLEAVLNLLAQPGFV--DSSPVLAEQCMQLVFRLCTT---RGMALPVLQLLRGNSIDFFYSHLRDLV-----GSGRAR---------CRDSF------------ARHGMAWLLQGVAVELH--------VCCTGEP----------PYPSKARRLLALLYGGHADDAALLQQRMCFMLEVLADMDIDEAGPVGSPDGRTMEAIRECSKPLETGGGGSQRQFEVIDIKALRALQRAGVPAQGDDS---------------SRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLLVDNAQVARQGSGSSGKR-ILVSLLSAALKKICA 1005
            S NCLEA L+L++   FV    +  LA +C +L +RLC +   RG+ LPVL  LR    D++  H   L+     G G  R         C  S               H +AWLL+G+AVELH             +P          P PS+  R L+ L+ G     A     +         +D++   P   P      A      P +  GG       ++D + L  L RA    Q D S                +   ++ WA  WN +     + SHL   W ++   +L SC  LL D+      G G   KR +LV L   AL ++ A
Sbjct: 1687 SDNCLEAALHLVSDLNFVLDPRTSSLAARCYELAYRLCDSSDVRGVRLPVLLKLR--VADYWIEHASRLLSGPIEGGGAQRQSVLSFISACASSADSATSLTRSQCDVLHSIAWLLRGMAVELHSLTGLSLPASVADDPGLADLRAAAAPQPSRCCRTLSFLFSGPTFAVARALTDLPLATPPFT-LDLERGTP---PQALIRAATGVLEGPRDVCGG-----HRIVDCRVLLKLLRASHQGQQDGSPLDTSTAFPSSSPSTDQEREAIAWADGWNLYSSYSCATSHLSGGWEELTGSALASCRSLLFDDEAHLSSGGGEVLKREMLVELTCLALSRLVA 2015          
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Match: I1BR80_RHIO9 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BR80_RHIO9)

HSP 1 Score: 79.7 bits (195), Expect = 6.290e-12
Identity = 105/450 (23.33%), Postives = 187/450 (41.56%), Query Frame = 1
Query:   25 VRGAIMELLLKS--INAPGPNLSHVLLGLADT-VKAVSAGLGGRFTVSEGKLGAGSSNCLEAVLNLLAQ--------------------PGFVDSSPVLAEQCMQLVFRLCTTRGMALPVLQLLRGNSIDFFYSHLRDLVG-------------SGRARCRDS------FAR-----HGMAWLLQGVAVELHVCCTGEPPYPSKARRLLALLYGGHADD--------AALLQQRMCFMLEVLADM------DIDEAGPVGSPDGRTMEA-IRECSKPLETGGGGSQRQFEVIDIKALRALQRAGVPAQGDDS-------SRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCGGLLVDNAQVARQGSGSSGKRILVSLLSAALKKICAHPNADVVLVEPIAHSCLSIMGTLR---GLGAAGVLSIGEGQALLQHMLEAICAR 1158
            VR AI++LLL++  +    P L+  LLG   T V++          + + +    + +CL ++L++L Q                      F+D+ P+LAE+C +L+++LC  + ++L  L+ LR N  +FFY     +               SG   C D       F R     H  AWLLQ +A+ELH     E    +   +LL LLYG   +         +  LQQ +  MLE ++ +      D+ + G +     R  +A I E    L   G       +V DI+A+    R    ++  +S       + +   L      N   +   ++ H   +W+QVV ++L  C  L+            S  ++I+  LL+  L K+ +    D  +++ ++   L+++  LR    +     L + + + +   +LE IC +
Sbjct: 1038 VRLAILDLLLENARLKTNSPTLTEYLLGYKLTNVRSP--------VLQDTETNRITLSCLHSILSMLQQGTENSSANGDSMMVDLSESSQPFIDTHPLLAEKCYELIYQLCAKQSISLSTLRYLR-NREEFFYKQFEIMSSRFETDLFVESSPFSGTICCADGTEIQSDFFRVRAKLHQRAWLLQSIALELHTTACMEQK--ANIYKLLELLYGRSPESMPDQGFFSSRGLQQPLVKMLEFVSSLEFLWQDDLTKDGAIAET--RYFKAFIPENFYTLNKEG------VQVYDIRAMYTFLRTVQVSEYKESIETDLIENEMGEILAACMALNRIKEINYAKRHCMKAWKQVVHITLLECFDLI----------HVSDREKIIYELLTMLLSKMLSTQGYDTEMLKSMSEVVLALLNRLRREKNMRTIAQLPVEKLRHVFNGILECICQK 1458          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1000.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UAR1_9STRA6.670e-2626.58Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
D7FNG5_ECTSI6.820e-2330.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L557_9PHAE1.490e-1928.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0DLW1_THETB6.150e-1926.21Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S4W5F5_9STRA1.780e-1625.60Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1YVX3_9STRA1.940e-1625.60Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A165IAB1_EXIGL5.700e-1625.27Uncharacterized protein n=1 Tax=Exidia glandulosa ... [more]
A0A8B8AJV1_CRAVI3.620e-1423.10nuclear pore complex protein Nup205-like n=1 Tax=C... [more]
A0A7S4I8C0_9STRA4.220e-1427.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
I1BR80_RHIO96.290e-1223.33Uncharacterized protein n=1 Tax=Rhizopus delemar (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1000contigC-australica_Contig_1000:4745..7644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T012594
PFAMsNup192
Model size1462
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.11e-25
EggNOG OGsKOG1835@1|root,KOG1835@2759|Eukaryota,1MEZD@121069|Pythiales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005540.1
DescriptionNuclear pore complex scaffold, nucleoporins 186/192/205
Cds size1458
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1000.2.1prot_C-australica_Contig_1000.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1000 4745..7642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.3734415-CDS-C-australica_Contig_1000:4744..51321682586735.3734415-CDS-C-australica_Contig_1000:4744..5132Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 4745..5132 +
1682586735.3832526-CDS-C-australica_Contig_1000:5447..55541682586735.3832526-CDS-C-australica_Contig_1000:5447..5554Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 5448..5554 +
1682586735.391618-CDS-C-australica_Contig_1000:5684..57951682586735.391618-CDS-C-australica_Contig_1000:5684..5795Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 5685..5795 +
1682586735.402887-CDS-C-australica_Contig_1000:6019..61891682586735.402887-CDS-C-australica_Contig_1000:6019..6189Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 6020..6189 +
1682586735.4193943-CDS-C-australica_Contig_1000:6515..66091682586735.4193943-CDS-C-australica_Contig_1000:6515..6609Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 6516..6609 +
1682586735.427238-CDS-C-australica_Contig_1000:6824..71131682586735.427238-CDS-C-australica_Contig_1000:6824..7113Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 6825..7113 +
1682586735.435042-CDS-C-australica_Contig_1000:7198..72881682586735.435042-CDS-C-australica_Contig_1000:7198..7288Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 7199..7288 +
1682586735.4428082-CDS-C-australica_Contig_1000:7433..76421682586735.4428082-CDS-C-australica_Contig_1000:7433..7642Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 7434..7642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1000.2.1

>prot_C-australica_Contig_1000.2.1 ID=prot_C-australica_Contig_1000.2.1|Name=mRNA_C-australica_Contig_1000.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=486bp
AQADGGDCVRGAIMELLLKSINAPGPNLSHVLLGLADTVKAVSAGLGGRF
TVSEGKLGAGSSNCLEAVLNLLAQPGFVDSSPVLAEQCMQLVFRLCTTRG
MALPVLQLLRGNSIDFFYSHLRDLVGSGRARCRDSFARHGMAWLLQGVAV
ELHVCCTGEPPYPSKARRLLALLYGGHADDAALLQQRMCFMLEVLADMDI
DEAGPVGSPDGRTMEAIRECSKPLETGGGGSQRQFEVIDIKALRALQRAG
VPAQGDDSSRIAHSLQWASEWNTFVQRMASQSHLCTSWRQVVEVSLHSCG
GLLVDNAQVARQGSGSSGKRILVSLLSAALKKICAHPNADVVLVEPIAHS
CLSIMGTLRGLGAAGVLSIGEGQALLQHMLEAICARGGAGGSKMLCAHLF
GCLLHFLQHSQAPYVAGGDLSSVGAVGVAYEDLVEAHALCAETQQQYSTQ
LEPFIDRLVEMLGRDTTCGVPVCESLAFSLLAALMR
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mRNA from alignment at C-australica_Contig_1000:4745..7644+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1000.2.1 ID=mRNA_C-australica_Contig_1000.2.1|Name=mRNA_C-australica_Contig_1000.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2900bp|location=Sequence derived from alignment at C-australica_Contig_1000:4745..7644+ (Chrysoparadoxa australica CS_1217)
GCTCAAGCGGATGGAGGTGACTGCGTGAGAGGGGCCATCATGGAGCTGCT ACTCAAGAGCATCAACGCACCAGGTCCTAACCTCTCACACGTGCTTCTGG GGTTAGCGGACACCGTAAAGGCGGTGTCTGCCGGGCTAGGGGGGCGATTC ACTGTAAGCGAAGGCAAGCTAGGTGCAGGCTCCAGCAACTGCCTGGAGGC TGTGCTCAACCTCTTGGCACAGCCTGGCTTTGTGGATAGCTCCCCAGTGC TGGCTGAGCAGTGCATGCAGCTGGTGTTTCGGCTGTGCACCACGCGAGGG ATGGCTCTTCCGGTGCTGCAGCTGCTGCGTGGTAACTCCATCGATTTCTT TTACAGTCATCTTAGAGACTTGGTGGGGTCAGGCCGAGGTGAGTTGAGAT GAGATGAAATGAACTGTGACCAGAGAAGGTTGACGTGCTCAAACCTCAAC CCTCATACCACTTGTTCTCCTTATCATGACCGCATAAATTATTAACTGTC ACTGCCTTTCAGCCAATTCATGCAACTGCCACTCTTGTTGCCAGATCCTA TACCAATGCCTCTATATCTCAGCAACCACCTTGTGACTGCACCTCTGCTA TGCCTTCCTTCTTTGTTCCTACAAAGCTTTCTTCTCCCCCATGCCTGCTA GGAATGGCTGCTGACTTCCTTTGCCCTCCTTTACGTTCCTTTTTTGCGCC CAGCTCGGTGCCGTGACAGCTTCGCCAGGCATGGTATGGCCTGGCTGTTG CAAGGTGTAGCCGTTGAGCTTCATGTCTGCTGCACGGGAGAGCCTCCCTA CCCGTCCAAGGTCAGTCATCGGTTATCACCTGCTCTGCTCCCACTCATCC AGCTTCTCAACTCACCTGAGCTGAACTCAATCCACTCGCTCTGCTACCGT GGCTACAGCTTCACTCATTTGCCGTTCTTTTCTGCCTCAGGCTCGTCGTC TGCTGGCGTTGCTGTACGGTGGACATGCAGATGACGCGGCACTGCTGCAG CAGCGGATGTGCTTCATGCTGGAAGTACTGGCCGACATGGATATAGATGA GGTATGCCACCATTAATCACCATTACCAGCAAACCATTAGCAAGAGGTGC CACGCAACACTTTATAATATATATCCTCTATTGGAAAGTTAAGGGAACTA TAAAAGAAATCAAAGCATGTAGTAGCCCAAAAGCTCGGCAACACTTTAGA TTAGTTAGCTGCCTGGTGCCGTGACTACTGGTCTTGTGTCTCACTCATCA TGTCACTGCTCCCACATGTCAAAAGGCTGGCCCTGTGGGGTCGCCTGATG GCCGCACTATGGAGGCCATCAGGGAGTGCAGCAAGCCGTTGGAGACTGGA GGTGGTGGCAGTCAGAGGCAGTTTGAAGTGATTGACATCAAGGCGCTGCG AGCTCTGCAGCGGGCTGGTGTGCCTGCGCAGGGTGATGACAGCAGGTGAT GTCAGTTGTCATTTGCTCAGAGTGATGCGTGAGTGCTGATACTTAGCAAC TTAGCAGTGGGGAAGAAGCAGTCACCAGTCAACAACCTTCAAAATACATA CTAGCTAAACTTAAAGCTTCAATTCAAGAAGTTTCACATAGATTACCCTT ATGGGCGCTCTCACTTGTTGCTGTTGCTTCACCATGCTTTGTTTGCCGCC TGCTAGCTCTCTAGTTGCCTATTTACTGCAGGTGTTACTGTTTGAACTGC CTGGCTGCTCTCCCGCATCACGCTCACCTTGCTCTCATTTTGCTGAATTG GCTCCCCGTCGTCCTCAACAGCCGTATAGCTCACTCGCTACAGTGGGCAA GTGAATGGAACACGTTTGTGCAACGAATGGCTTCACAGTCTCACCTCTGC ACCTCATGGCGCCAGGTGCTTTAATGCTTGAACATGCCTTAATGTTAGCC ACCATAGCCTTCACCTTTAACAAGGATTTGTCCTCTTTTGAGCCAACCCT GTACCCAAAAGAAAGAACAAACACCGCAACAACACCTTTCTTTTTTTTGT CCTTGGCATTTCACTTAATTTCTTCAAACGCTAGCCCTTCTCCCTTCTCA CCATCTCAACCTCACCTTTTTCCTTGCTAGGTGGTTGAGGTATCCCTTCA TAGCTGTGGTGGTCTTCTAGTGGATAATGCCCAGGTGGCACGACAAGGGT CTGGCTCCAGCGGCAAGCGAATCCTGGTCAGCCTGCTGTCAGCGGCGCTC AAGAAGATTTGTGCCCACCCAAACGCTGATGTGGTGCTTGTGGAGCCCAT AGCTCACTCCTGCTTAAGCATTATGGGGACGCTGCGGGGCCTGGGGGCTG CCGGTGTGCTGTCCATTGGGGAAGGACAAGCACTGCTGCAGCATATGCTG GAAGCTATCTGTGCTAGAGGTGAGGGAGAGCAGCCACCCTTGAGTTAAAC CTGGCAAGCGTTTTCATTGTCACTGCTCCAACTCCGACCGCCCCGCTTTC GCAGGTGGTGCAGGAGGGTCCAAGATGTTATGCGCGCACTTGTTTGGCTG CCTGCTACATTTCTTGCAGCACTCACAGGCGCCATATGTAGCAGGTGATT CAGCCTGTCAACTGCAACTGCAACTGCAATTGCAACTCTGTGATACAAAT CATTCATACATCGCTCCGCCTGCGCGTCCCTTCACTTGACAATGCTCTCC TCCATCCAATCCTTCCTCCCTACCACTAACTTCTGCTAGGTGGTGATCTG AGCTCGGTTGGCGCCGTTGGCGTAGCCTACGAGGACCTGGTGGAGGCTCA TGCCCTCTGCGCTGAAACTCAGCAGCAGTACAGCACACAGCTGGAGCCGT TCATTGACCGTCTTGTTGAGATGCTTGGACGTGACACCACCTGTGGCGTG CCAGTTTGTGAGTCGCTTGCGTTCTCCTTGCTGGCTGCGTTGATGAGGAC
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Coding sequence (CDS) from alignment at C-australica_Contig_1000:4745..7644+

>mRNA_C-australica_Contig_1000.2.1 ID=mRNA_C-australica_Contig_1000.2.1|Name=mRNA_C-australica_Contig_1000.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1458bp|location=Sequence derived from alignment at C-australica_Contig_1000:4745..7644+ (Chrysoparadoxa australica CS_1217)
GCTCAAGCGGATGGAGGTGACTGCGTGAGAGGGGCCATCATGGAGCTGCT
ACTCAAGAGCATCAACGCACCAGGTCCTAACCTCTCACACGTGCTTCTGG
GGTTAGCGGACACCGTAAAGGCGGTGTCTGCCGGGCTAGGGGGGCGATTC
ACTGTAAGCGAAGGCAAGCTAGGTGCAGGCTCCAGCAACTGCCTGGAGGC
TGTGCTCAACCTCTTGGCACAGCCTGGCTTTGTGGATAGCTCCCCAGTGC
TGGCTGAGCAGTGCATGCAGCTGGTGTTTCGGCTGTGCACCACGCGAGGG
ATGGCTCTTCCGGTGCTGCAGCTGCTGCGTGGTAACTCCATCGATTTCTT
TTACAGTCATCTTAGAGACTTGGTGGGGTCAGGCCGAGCTCGGTGCCGTG
ACAGCTTCGCCAGGCATGGTATGGCCTGGCTGTTGCAAGGTGTAGCCGTT
GAGCTTCATGTCTGCTGCACGGGAGAGCCTCCCTACCCGTCCAAGGCTCG
TCGTCTGCTGGCGTTGCTGTACGGTGGACATGCAGATGACGCGGCACTGC
TGCAGCAGCGGATGTGCTTCATGCTGGAAGTACTGGCCGACATGGATATA
GATGAGGCTGGCCCTGTGGGGTCGCCTGATGGCCGCACTATGGAGGCCAT
CAGGGAGTGCAGCAAGCCGTTGGAGACTGGAGGTGGTGGCAGTCAGAGGC
AGTTTGAAGTGATTGACATCAAGGCGCTGCGAGCTCTGCAGCGGGCTGGT
GTGCCTGCGCAGGGTGATGACAGCAGCCGTATAGCTCACTCGCTACAGTG
GGCAAGTGAATGGAACACGTTTGTGCAACGAATGGCTTCACAGTCTCACC
TCTGCACCTCATGGCGCCAGGTGGTTGAGGTATCCCTTCATAGCTGTGGT
GGTCTTCTAGTGGATAATGCCCAGGTGGCACGACAAGGGTCTGGCTCCAG
CGGCAAGCGAATCCTGGTCAGCCTGCTGTCAGCGGCGCTCAAGAAGATTT
GTGCCCACCCAAACGCTGATGTGGTGCTTGTGGAGCCCATAGCTCACTCC
TGCTTAAGCATTATGGGGACGCTGCGGGGCCTGGGGGCTGCCGGTGTGCT
GTCCATTGGGGAAGGACAAGCACTGCTGCAGCATATGCTGGAAGCTATCT
GTGCTAGAGGTGGTGCAGGAGGGTCCAAGATGTTATGCGCGCACTTGTTT
GGCTGCCTGCTACATTTCTTGCAGCACTCACAGGCGCCATATGTAGCAGG
TGGTGATCTGAGCTCGGTTGGCGCCGTTGGCGTAGCCTACGAGGACCTGG
TGGAGGCTCATGCCCTCTGCGCTGAAACTCAGCAGCAGTACAGCACACAG
CTGGAGCCGTTCATTGACCGTCTTGTTGAGATGCTTGGACGTGACACCAC
CTGTGGCGTGCCAGTTTGTGAGTCGCTTGCGTTCTCCTTGCTGGCTGCGT
TGATGAGG
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