mRNA_C-australica_Contig_1000.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1000.3.1
Unique NamemRNA_C-australica_Contig_1000.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1000.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1000contigC-australica_Contig_1000:7692..8257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586735.1645122-CDS-C-australica_Contig_1000:7691..78071682586735.1645122-CDS-C-australica_Contig_1000:7691..7807Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 7692..7807 +
1682586735.1761103-CDS-C-australica_Contig_1000:8064..82571682586735.1761103-CDS-C-australica_Contig_1000:8064..8257Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1000 8065..8257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1000.3.1prot_C-australica_Contig_1000.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1000 7692..8257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1000.3.1

>prot_C-australica_Contig_1000.3.1 ID=prot_C-australica_Contig_1000.3.1|Name=mRNA_C-australica_Contig_1000.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=103bp
GEWDWQEVVQLQLLRLGMPFLIGVAEHWRFAGSVDTCNRLCHCWLACLQA
LQSKCTSQDLVKMTLMVTASEGTVIHQPRHKVACRSHRHCRAFLGHLRMR
QC*
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mRNA from alignment at C-australica_Contig_1000:7692..8257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1000.3.1 ID=mRNA_C-australica_Contig_1000.3.1|Name=mRNA_C-australica_Contig_1000.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=566bp|location=Sequence derived from alignment at C-australica_Contig_1000:7692..8257+ (Chrysoparadoxa australica CS_1217)
GGGGAGTGGGACTGGCAGGAAGTGGTGCAGCTTCAGCTGCTTCGCTTGGG
AATGCCTTTCCTCATAGGAGTGGCAGAGCACTGGAGATTTGCAGGCAGCG
TGGATACTTGCAACAGGTCAGTGGATGCAGTGAGCCTTGGTTAGAGATAG
AGATAGGAGTAGGGTTGGGTAGGCACCAGGTGCTCGATCCATACGACAGC
CAGCTAGCTCCCCAGAGGTATAAGGGCCTGAGATGGAAGGGGATGTGCAG
GAGTTTTTGCCTGCATAGTTCAAGGCGTGCAGTGCCGGGCTCTCACAGCA
CCTCTAATCTTGCACATGTAGCGCTTAGCGAGAGGCTTTACCAATCAATC
CCCCCACGAATTGCCATTGCCAGGTTGTGTCACTGCTGGCTGGCTTGTCT
CCAAGCTCTGCAAAGCAAGTGCACGAGTCAGGACTTGGTCAAGATGACAC
TAATGGTCACTGCATCAGAAGGCACCGTTATTCATCAACCAAGGCACAAA
GTGGCTTGTCGGAGCCACCGTCACTGCAGAGCATTCCTCGGGCACCTCCG
AATGAGGCAGTGCTAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1000:7692..8257+

>mRNA_C-australica_Contig_1000.3.1 ID=mRNA_C-australica_Contig_1000.3.1|Name=mRNA_C-australica_Contig_1000.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=309bp|location=Sequence derived from alignment at C-australica_Contig_1000:7692..8257+ (Chrysoparadoxa australica CS_1217)
GGGGAGTGGGACTGGCAGGAAGTGGTGCAGCTTCAGCTGCTTCGCTTGGG
AATGCCTTTCCTCATAGGAGTGGCAGAGCACTGGAGATTTGCAGGCAGCG
TGGATACTTGCAACAGGTTGTGTCACTGCTGGCTGGCTTGTCTCCAAGCT
CTGCAAAGCAAGTGCACGAGTCAGGACTTGGTCAAGATGACACTAATGGT
CACTGCATCAGAAGGCACCGTTATTCATCAACCAAGGCACAAAGTGGCTT
GTCGGAGCCACCGTCACTGCAGAGCATTCCTCGGGCACCTCCGAATGAGG
CAGTGCTAG
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