mRNA_C-australica_Contig_100.1.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_100.1.3
Unique NamemRNA_C-australica_Contig_100.1.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_100.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_100contigC-australica_Contig_100:4915..7643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1553
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionConserved Cys-containing small protein
Ec32 orthologEc-08_001970.1
Cds size474
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_100.1.3prot_C-australica_Contig_100.1.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_100 4965..5763 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586733.0578394-UTR-C-australica_Contig_100:4914..49641682586733.0578394-UTR-C-australica_Contig_100:4914..4964Chrysoparadoxa australica CS_1217UTRC-australica_Contig_100 4915..4964 -
1682586733.1056814-UTR-C-australica_Contig_100:5763..61541682586733.1056814-UTR-C-australica_Contig_100:5763..6154Chrysoparadoxa australica CS_1217UTRC-australica_Contig_100 5764..6154 -
1682586733.1175551-UTR-C-australica_Contig_100:6417..65351682586733.1175551-UTR-C-australica_Contig_100:6417..6535Chrysoparadoxa australica CS_1217UTRC-australica_Contig_100 6418..6535 -
1682586733.127377-UTR-C-australica_Contig_100:6687..68251682586733.127377-UTR-C-australica_Contig_100:6687..6825Chrysoparadoxa australica CS_1217UTRC-australica_Contig_100 6688..6825 -
1682586733.1385267-UTR-C-australica_Contig_100:7125..71891682586733.1385267-UTR-C-australica_Contig_100:7125..7189Chrysoparadoxa australica CS_1217UTRC-australica_Contig_100 7126..7189 -
1682586733.148213-UTR-C-australica_Contig_100:7325..76431682586733.148213-UTR-C-australica_Contig_100:7325..7643Chrysoparadoxa australica CS_1217UTRC-australica_Contig_100 7326..7643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586733.0701063-CDS-C-australica_Contig_100:4964..52011682586733.0701063-CDS-C-australica_Contig_100:4964..5201Chrysoparadoxa australica CS_1217CDSC-australica_Contig_100 4965..5201 -
1682586733.0795844-CDS-C-australica_Contig_100:5369..54761682586733.0795844-CDS-C-australica_Contig_100:5369..5476Chrysoparadoxa australica CS_1217CDSC-australica_Contig_100 5370..5476 -
1682586733.0880136-CDS-C-australica_Contig_100:5543..56111682586733.0880136-CDS-C-australica_Contig_100:5543..5611Chrysoparadoxa australica CS_1217CDSC-australica_Contig_100 5544..5611 -
1682586733.0961626-CDS-C-australica_Contig_100:5701..57631682586733.0961626-CDS-C-australica_Contig_100:5701..5763Chrysoparadoxa australica CS_1217CDSC-australica_Contig_100 5702..5763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_100.1.3

>prot_C-australica_Contig_100.1.3 ID=prot_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=158bp
MKTPLGDYKGVEEWTAVGKSKEELHQAYQDCMLGHYRLFVAGAGVGLMVG
ITRKNYWPLVTGGFVGSMGDYFEAQGACKDRHDAWMACREREAEEEAQRR
QQDLAFTYTDAELAAKGWKRHGEGELGYNDEELMKAWEKSQQEREAKERG
AAHGKAS*
back to top

mRNA from alignment at C-australica_Contig_100:4915..7643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_100.1.3 ID=mRNA_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2729bp|location=Sequence derived from alignment at C-australica_Contig_100:4915..7643- (Chrysoparadoxa australica CS_1217)
GAGGAGGGAGGGGGGAGGGATTGAGAGTTTCTGTCTTGCTACATGCAATG
GCATCAAAGTCTGTTGGTCAAGAGACAGGACTTTCTCCCATACCCCCCAA
CCACCATTTCTTCCAGCTTGCCAGTTACCTGTTGCCTATGTGTGCGCCCT
GCATCCTAGTGCTTACCTCAACTACTCACCAAGGTGGGCTAGCTTCCGCC
TCTGGAGGTACTGCTGTATGGTTTGGTGTTGGAGGAGGTCTAGAAGTTGG
AGCAGGCAGGGGTAGTCTTCAGGAGAGGTTGCCATGGGTATAGTAATGCT
GTGACGCCTGGTTCCATGGTGAGAACGCTATGATATGCCTTACCGTGCTG
TGCTGTGCTGTGTGTGTGCTGTGCTTCATCAATCCGTGCCCCTATACATG
GACCTACTGATTTCTCCTCTGTCCTGTCTTGTTCTCTCCTTTGACGCACA
GCAGTCACCGGAACAATGCAAAGCATCAACGCTGGCCTGAAGAGCAGCAT
GTTACGCCAGCAGCCTTGGTGAGCATAGGGCGAGATGAAAGTTTAAAAGT
AGCACGGCATGCAGATACGGAAGAACCGAAGGGCAATAGCTTTGGGCTAG
AGCTTATCCTAACATGTTATGTCCCTGCGCTCTATCTACCACGCGTTCAG
TCAATCACTACTTGAAAGCTTGTGTTTGTCATTATCATTCTAGCTTATGC
CTGCTAATGCCTAATAACTCTTCCTGATTCTTGAGTGAAAAGGAATGACT
CCTTCCTCTTGACATTCTATTCCAACCTCACTCACTCCCGCCCACGTAAA
CCCTCTGTCATCTTCCAGTATGATCAACAGACCCTGACCAACAACAGCGA
GTAACTGGTCAGCATTTTTTTAATGTATGCGTACCTCACATGGCCCATCT
ATGACCCGAGCTTCTGACCTAGGAGATAGATACGTTGTCCGCACCAACCA
ATCTGAGCCATGGAAGCAACGTTGTGAGTGAAAGGGCACATGAATGAGAG
AAGAAATGGTACAAAATACAACCACTTTAAAGGCTAGGTTAAGAGATAAG
ACTGCTATCATGAAAGCAATGTAATTAATGCATTAGCTATGTTAGGCGTA
CCTTGCAGGTTTGAAATGCTGCCGCAAATTGTGAGAGGTATGGCTCAAGC
CTTCTGTTGCCTTTCTCCTTACATTGATCTAGCTCCTATCAGCCTTTTAT
GAAGAGGGTATCTGTGCTTCATACCTGTCAGCACGGGTGGTGCAGTGGGA
TAAGTAAAGTGGGCCAGTGAGTTTGGTTGAAAAGCTGAGTAGCAAGACAG
AGGAATAGTGGCATAGGGTGGCTCAGGTGCCTACTTTTCAGGGCTGGGGT
CCTCAGAGGGGAAGCTAACCTATCCCTCCCCTTTTCTTGGCCAGCAAAAG
ATGTTCTGACCTGTCCCCTAACCTAAATCAAGAATTCAATTCCCTTGTCA
CCTCCATCTCCTAATGGCGCTCCCCCTTTATCCATACCTTTTCCCCTGTA
TTATGAGCTCTTGATGCTCTCCTGAGGCCTTAGGATCCTCCAAGGGGTAG
ACAGCCAGCCTCCTCCGCTCTCTTTTTTCGCGCCCCTGGTCCCAGAAGGG
CGCATCATCGCCCAGGTCACGCCTTTCTCTCAGGGTGCCGTTTTGGCAGC
TAGGACATCAAGCGTCTCTCTTACAGCAACATCGCCCCTCTCTCTGTCTC
TCTTGCCTCGTCTGTTGGATACCATTGAAAATTGATCCCTAGTTGCTACA
GAGTGCTTGTGTCGACGCAGGGATAGAGCTTTCCCTTTGCTGTACAGTCA
CACAACAAGGACAAGGACCCTGCCGCCTCTCACCCTCCTTCTTGCTCTTT
AGCTCTCGGGTCGAGGGGGGTTCAAGCAAGATGAAGACTCCTCTTGGGGA
TTATAAAGGCGTGGAGGAGTGGACAGCAGTCGGGAAGAGCAAGTAGGAGC
CCATCGGTGCCTGGTCGCCATCCGAAGTGATCCTAGATGAGGGAAGCTGA
TGTTGACCTCGCTCCACTGTGCCTCATCATAGGGAAGAGTTGCACCAGGC
GTACCAGGACTGCATGTTGGGGCATTACAGACTCTTCGTAGCCGGAGCAG
GTGCATGCACTTCTCGAACGACCTTGTGTGGCATTGCCCCAACCACTCTG
CAATCATACTCTCCTAGGTGTGGGGCTCATGGTAGGCATCACCCGCAAGA
ACTACTGGCCGCTAGTAACCGGAGGCTTTGTCGGCAGCATGGGGGACTAT
TTTGAGGCGCAGGGGGCATGCAAGGTGAGCATGCCAAGCATCAAAACAAT
CAAGCAAGAAGGGGGACTGAGTACAGGGTAAGAGTGCTCGGCTAGGTGTT
GCAGCCTGGTGTGAAAGTGATGTCATCTTGAGGCTCGGCCAGGCCCCCTC
TTTTCCCTCCATGTCTCAACACCACAACGGTTCCTTCCTCAGGACCGGCA
TGATGCCTGGATGGCATGCAGGGAGAGGGAAGCGGAAGAAGAGGCTCAGC
GCCGGCAGCAGGACTTGGCCTTTACGTACACCGACGCTGAGCTCGCTGCC
AAAGGGTGGAAGAGACATGGCGAGGGCGAGCTTGGGTACAATGATGAAGA
GCTCATGAAGGCTTGGGAGAAGAGCCAGCAGGAGCGGGAGGCAAAAGAGA
GAGGGGCTGCCCATGGGAAAGCTTCTTGACTGTGACACGACGTAGTACAT
TTTTGGTAGCAACTTCGTGGTCAAGCTGT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_100:4915..7643-

>mRNA_C-australica_Contig_100.1.3 ID=mRNA_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=474bp|location=Sequence derived from alignment at C-australica_Contig_100:4915..7643- (Chrysoparadoxa australica CS_1217)
ATGAAGACTCCTCTTGGGGATTATAAAGGCGTGGAGGAGTGGACAGCAGT
CGGGAAGAGCAAGGAAGAGTTGCACCAGGCGTACCAGGACTGCATGTTGG
GGCATTACAGACTCTTCGTAGCCGGAGCAGGTGTGGGGCTCATGGTAGGC
ATCACCCGCAAGAACTACTGGCCGCTAGTAACCGGAGGCTTTGTCGGCAG
CATGGGGGACTATTTTGAGGCGCAGGGGGCATGCAAGGACCGGCATGATG
CCTGGATGGCATGCAGGGAGAGGGAAGCGGAAGAAGAGGCTCAGCGCCGG
CAGCAGGACTTGGCCTTTACGTACACCGACGCTGAGCTCGCTGCCAAAGG
GTGGAAGAGACATGGCGAGGGCGAGCTTGGGTACAATGATGAAGAGCTCA
TGAAGGCTTGGGAGAAGAGCCAGCAGGAGCGGGAGGCAAAAGAGAGAGGG
GCTGCCCATGGGAAAGCTTCTTGA
back to top