prot_C-australica_Contig_999.6.1 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-australica_Contig_999.6.1
Unique Name	prot_C-australica_Contig_999.6.1
Type	polypeptide
Organism	Chrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length	392

Homology

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BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Match: D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.750e-15
Identity = 72/260 (27.69%), Postives = 119/260 (45.77%), Query Frame = 0

Query:   52 RAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDIGMHLRMDSYGDLYVASKDEDSLACDCKSLMVGMRLLAMNG----SVLTSS-------------KSALKDAHNLLEEMATDDQL-------VLRLQNPQHIIRAVDKWLDLNVSDKVYEVEIKEGVYNTKEDFAATVQKCARHQHKG-LRTFDCTVHMDAAN-FTLTADGDA-VSLLFGTGTHAKANCSSHFNYNMEEGREDTLAAGKVTTP 284
            R +   +F  +D     RI  WEL R+     G   +   E+ F    +G+ +  D  G + VA  +EDS A +  SLM+GMR+L+++G      LT++             KS+L+   ++LE ++  D         VL +  P  ++   + WLD++VS     V +  GVYNT   +   +Q+  R QH   LR F   V  D A  F + + G A   +L+ +G H+  +C    + + E+     + AG+   P
Sbjct:   98 RQRAYSLFEHLDVTCSHRIYAWELARFFPPAIGCTTDNVVEIAFTCNTLGLTVEEDEEGMVVVAGWEEDSAAAEHPSLMIGMRILSIDGWDLPCALTAAASRHGAPGRDGTFKSSLRKCESVLEALSEGDMEDGENALHVLEVAMPAIVVTKSNTWLDMDVSGVAVAVSVPLGVYNTIGAYFTALQEAGRDQHPTELRHFG--VKFDPAQPFVMLSAGYAPFRILWRSGEHSTQSCRKLLHCSAEQ-----MVAGRFGNP 350

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BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Match: A0A835ZC92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC92_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.700e-14
Identity = 57/185 (30.81%), Postives = 87/185 (47.03%), Query Frame = 0

Query:   47 GKNDPRAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDIGMHL-RMDSYGDLYVASKDEDSLA---CDCKSLMVGMRLLAMNGSVLTSSKSALKDAHNLLEEMATDDQLVLRLQNPQHIIRAVDKWLDLNVSD----------KVYEVEIKEGVYNTKEDFAATVQKCAR 217
            G++  RA    +F ++D D +GRIT +ELER+L     +P   +F++TF G D+ + L R+D  G L V    ED +         L  G+ LL + G  L  +K   +    +L  +A    + +    P HI+   D WLDL +S           +     +  G Y T+E FA+ VQ  AR
Sbjct:   44 GQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVD--GRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAAR 226

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2

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POSITION

0


Match Name	E-value	Identity	Description
D8LFE7_ECTSI	2.750e-15	27.69	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZC92_9STRA	4.700e-14	30.81	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 376..392
None	No IPR available	GENE3D	1.10.238.10		coord: 49..342 e-value: 3.2E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 323..335
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 63..75
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 50..85 score: 8.515894
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 317..345 score: 8.460104
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 48..341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-australica_Contig_999	contig	C-australica_Contig_999:5209..7725 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Chrysoparadoxa australica CS_1217 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_999.6.1	mRNA_C-australica_Contig_999.6.1	Chrysoparadoxa australica CS_1217	mRNA	C-australica_Contig_999 5035..7725 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-australica_Contig_999.6.1 ID=prot_C-australica_Contig_999.6.1|Name=mRNA_C-australica_Contig_999.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=392bp
MSTTRRVQRTYTARKKRTGKHDDAEDRSEKELDKAMQDMVRKAHEEGKND
PRAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDI
GMHLRMDSYGDLYVASKDEDSLACDCKSLMVGMRLLAMNGSVLTSSKSAL
KDAHNLLEEMATDDQLVLRLQNPQHIIRAVDKWLDLNVSDKVYEVEIKEG
VYNTKEDFAATVQKCARHQHKGLRTFDCTVHMDAANFTLTADGDAVSLLF
GTGTHAKANCSSHFNYNMEEGREDTLAAGKVTTPMWTKGAFAGSSQKGPQ
IDLGGLREGALGILATDLMNEFDENKSQLVDFEEFVNMHQKYFVRDSRGR
QGERLKRKLVESYMPEEKQKAFEVEVEAAERAAERKKHLLAQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair