prot_C-australica_Contig_1017.3.2 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-australica_Contig_1017.3.2
Unique Nameprot_C-australica_Contig_1017.3.2
Typepolypeptide
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length1055
Homology
BLAST of mRNA_C-australica_Contig_1017.3.2 vs. uniprot
Match: A0A835Z5H1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 9.270e-47
Identity = 154/551 (27.95%), Postives = 221/551 (40.11%), Query Frame = 0
Query:   71 GVEGTAALTYALEEQHLCISFECCTSFNGDHGYPGRPHIDTLVATAIHSYNENFPVAWSYLSVYAFCMDHQLPVTGSLIVLEPDLGHIVLDHFEALRHQFDAHSSQVEQLFDTMASTGAACHMK---CIPHTLISDVVEGLVMSATFLEPRDIENLLQKSQAPVPLNMHQVSSHALRSKVLA----------IAGQPLLSLEHAQQLSDELVIPVRRVVSVSKVSLPLQGQGD----------------------------------------------------------GLAHELITSLMQHPAGDPRTRVITDTLATCTTLNVKANLILY------QARPGEEEEAGLE---------------NLFVVHIPLDNHHYLFQHHAERHQLALSLYRGYVFRVVATESGYAAHVFMNFYPKFDNAHEKEGHDIIEALWERGETS-----LKKVKCSYYMINTMVCRRLV-------EGSEMAPWDEYVDSCRKKLARWGVPQELRGLYMNRAKGWWGFVKASP---EPISSQTYLTQFDQFLAQEEDWSD 514
            G  G A L  ALE  H C SFEC TSF+GDHGYP R  +D LV TAIH+ +    + W+   VY F  +  L    +L+ L+PD    V + +  LRHQF  HS QVE  F   A+  +   M    C+PH L+S VVEG V+ +  L   D  NLL+   A   ++    S    R  +L+          + G+       +Q   ++ V  + R    S   L  +  G                                                               +L+  L+ + A D  TR +   L TC  L VK+ L  Y      Q RP +E +  ++                                      +  + L   + F+ V     + A VFMNFYPKFDNA + E   II+ LW +G  S     +KK K SYYM  TM+CR ++        G +     E++ SC  +L+ WG+ Q  +  YM R  GWW ++ A+    + + +  +L  F QFL +E  W D
Sbjct:   34 GDAGLARLAEALEAAHACASFECITSFSGDHGYPERAGVDVLVCTAIHTLSAGASIPWTQGEVYRFTSEQGLVCAQTLLALDPDAAETVFEQYNLLRHQFGPHSQQVEHFFAACAAPESPQRMVALCCLPHHLVSAVVEGFVVRSVTLAASDAANLLELYDA-TQVDSQVESGGESRRLLLSDDVRRGVKDKLQGERTGHAGSSQPRVEQAVQDLLRERGYSPCVLRPKLSGSCQLVDRKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLAQLLANHADDGATRFVVGVLKTCIQLRVKSKLAHYTMKVATQQRPAQESDKKMKYWQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGAGEETVDLLILHTFQDVDQYRFHRAEVFMNFYPKFDNAKQLEADKIIQGLWPKGGGSVITGGIKKFKFSYYMYLTMMCRAVIGSVCRPKAGKKELEKKEWLTSCTSRLSTWGMSQLQQVPYMRRLSGWWEYLTAAAARNDHLDAFDFLDAFQQFLREEHHWCD 583          
BLAST of mRNA_C-australica_Contig_1017.3.2 vs. uniprot
Match: A0A7J7QM63_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QM63_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 2.240e-6
Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 0
Query:   26 VIASLKMSGHLITVRAWRGSLIFSAKNSLSNQFTTSAELILQQQ----LGVEGTA-----ALTYALEEQHLCISFECCTSFNGDHGYPGRPHIDTLVATAIHSYNENF-PVAWSYLSVYAFCMDHQLPVTGSLIV 150
            ++ ++K SG L+T+ A +G   F+AKNSL N++T  A ++LQ      LG E  A     A+  AL+++HL +SFE  T  +G HG    P  + LVAT+ H+   +  P   S+      C++  LP+  + I+
Sbjct:    1 MVVTIKHSGSLVTLSA-QG---FAAKNSLDNEYTAGAAVLLQTHFVRLLGSEAAALQRLAAVMDALQQRHLAVSFEMVTGCHGHHGQ--LPAGEYLVATSAHTAGSSGQPEFLSWHGFLQLCLEFGLPLNDTWIL 129          
BLAST of mRNA_C-australica_Contig_1017.3.2 vs. uniprot
Match: A0A250XNQ0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNQ0_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-5
Identity = 53/193 (27.46%), Postives = 82/193 (42.49%), Query Frame = 0
Query:   26 VIASLKMSGHLITVRAWRGSLIFSAKNSLSNQFTTSAELILQQQL----------GVEGTAALTYALEEQHLCISFECCTSFNGDHGYPGRPHIDTLVATAIHSYNENF--PVAWSYLSVYAFCMDHQLPVTGSLIVLEPDLGHIVLDHFEALRHQFDAHSSQVEQLFDTMASTGAACHMKCIPHTLISDVVE 206
            ++ ++K SG LIT+    G L F+AKNS+ N +T  A ++LQ               +  + L  +L  + + +SFE  T  +G HG    P  + LVAT+ HS +     P+   +     FCM   LPV  + +V                        SQ   + D MA TG   H      T +S++V+
Sbjct:  117 MVVTIKHSGSLITLS---GDLGFAAKNSICNDYTAGAAVLLQAHFLRLENGDVAKSQDRLSKLMLSLRSRKIAVSFEMVTGCHGHHGQ--IPRGEYLVATSAHSLDAGTGRPIFLPWADFMHFCMQEGLPVNDTWLVAGTTAA------------------SQCCDMLDEMALTGGPTHTAL---TALSNLVQ 283          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1017.3.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z5H1_9STRA9.270e-4727.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7J7QM63_9CHLO2.240e-634.07Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A250XNQ0_9CHLO1.600e-527.46Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 637..784
e-value: 1.7E-5
score: 26.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 649..774
IPR038837tRNA ligase 1PANTHERPTHR35460TRNA LIGASE 1coord: 25..1026
NoneNo IPR availablePANTHERPTHR35460:SF1TRNA LIGASE 1coord: 25..1026

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1017contigC-australica_Contig_1017:9990..16390 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1017.3.2mRNA_C-australica_Contig_1017.3.2Chrysoparadoxa australica CS_1217mRNAC-australica_Contig_1017 9784..16421 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-australica_Contig_1017.3.2 ID=prot_C-australica_Contig_1017.3.2|Name=mRNA_C-australica_Contig_1017.3.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=1055bp
MSFDVHMSPATRGWLQQRRTSRIPAVIASLKMSGHLITVRAWRGSLIFSA
KNSLSNQFTTSAELILQQQLGVEGTAALTYALEEQHLCISFECCTSFNGD
HGYPGRPHIDTLVATAIHSYNENFPVAWSYLSVYAFCMDHQLPVTGSLIV
LEPDLGHIVLDHFEALRHQFDAHSSQVEQLFDTMASTGAACHMKCIPHTL
ISDVVEGLVMSATFLEPRDIENLLQKSQAPVPLNMHQVSSHALRSKVLAI
AGQPLLSLEHAQQLSDELVIPVRRVVSVSKVSLPLQGQGDGLAHELITSL
MQHPAGDPRTRVITDTLATCTTLNVKANLILYQARPGEEEEAGLENLFVV
HIPLDNHHYLFQHHAERHQLALSLYRGYVFRVVATESGYAAHVFMNFYPK
FDNAHEKEGHDIIEALWERGETSLKKVKCSYYMINTMVCRRLVEGSEMAP
WDEYVDSCRKKLARWGVPQELRGLYMNRAKGWWGFVKASPEPISSQTYLT
QFDQFLAQEEDWSDYTPPMEKRVVVVLCVHIRARADWAAALQACEGVENE
VINVWPAWGSVKRVPAEKDFLVNPLMVIDIKGVEAMQGSQDKGLLLQWVR
AAQKRCCLVVNPSETSPEAVAEMLRSGEGLGEEEEKANSSPAAQLIIPSG
IPGAGKSMLASLLQAELGAIPVSSDGIADKHLFKMKLSMLLKESAPESEN
RKIIYYDKNAAASQYASIVEDHMPELTIFIAFGASELDGITREQLARLPP
ITLVELAVCMSRTLRRKQHIGGLDSSLRIGMRVVVKFAQLLGDRYGTRLA
FLDHLRSLVGRERVLHIPICSLDQFNLQLPRELEYSLTHALRVRNPTQDL
DDRWEATVRSGLASAGSLLDAVDMKRSMEERREALVQGVAALCRNVGSRQ
RKKSPRKVRKARVMYKLELDCKMQEVVDAWPELQPWLIDQGLAVQLRRDL
HVTLAFPERATSEAITEMDTHLGTRAYAKITGVACDGKAAALIVEDMTHG
IYSLNPHAHITVSTQPGVQNFHSNTMLGKGPYKLLHRLQGPLTLAGEVVK
TRLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR038837tRNA_ligase_1