prot_C-australica_Contig_1014.1.3 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-australica_Contig_1014.1.3
Unique Nameprot_C-australica_Contig_1014.1.3
Typepolypeptide
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length283
Homology
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BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot
Match: A0A836CJS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.700e-20
Identity = 89/259 (34.36%), Postives = 131/259 (50.58%), Query Frame = 0 
Query:   16 ADVADAEKRGYQQRINERQEELRQIAAGTHGDLRREVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVKESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAA--------ERKRAEKRHREPRHMASDGPK-RGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRERAVQYLRLVDH---TIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEFNGTITNIAAEEV 262
            A  A  E    Q  I+   + + +I AGTH ++  ++  L  L+ R+ + ARA++E+ ++N RELA+FE+  A AT E  L   KE+L D I QE++R     EEA+K     + S             KRA++ H +      DG   RG     P           + LP   L++ E+R D  AI+ DWRERA++YL+LV       V  A D   +        L ++GDRV+V SRVT+EEF G +T +  +EV
Sbjct:   24 ASTARPEDESLQGEIDANYQAIEEINAGTHVEVVEKIKALQGLKRRREEVARAHNEKLLQNARELADFERRAAHATLETALATAKEALLDTIAQEIRRCE---EEARKTFSRAEDSRPPLPPPPLHPVNKRAKRPHSKKGGAGRDGGGGRGLGSRRP-------VTPSVCLP---LTDYEMRCDFAAIMADWRERAMEYLKLVGDGQWAHVDAARDSKGQPAVRVDGSLLKVGDRVSVWSRVTDEEFRGELTAVVGDEV 269
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1014.1.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJS7_9STRA6.700e-2034.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 16..36
NoneNo IPR availableCOILSCoilCoilcoord: 89..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..157
IPR013907Sds3-likeSMARTSM01401Sds3_2coord: 14..193
e-value: 1.4E-5
score: 34.5
IPR013907Sds3-likePFAMPF08598Sds3coord: 26..139
e-value: 4.1E-7
score: 30.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1014contigC-australica_Contig_1014:660..1894 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1014.1.3mRNA_C-australica_Contig_1014.1.3Chrysoparadoxa australica CS_1217mRNAC-australica_Contig_1014 320..1976 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-australica_Contig_1014.1.3 ID=prot_C-australica_Contig_1014.1.3|Name=mRNA_C-australica_Contig_1014.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=283bp
MDGEWEGDKPHKEQRADVADAEKRGYQQRINERQEELRQIAAGTHGDLRR
EVGLLMRLRDRKIQAARAYHERSVKNRRELAEFEKVNAQATYEAELEEVK
ESLQDVIEQEVKRVGDMMEEAKKEMEMNDLSAAAERKRAEKRHREPRHMA
SDGPKRGKPKLCPDGMVGKAAAIKLLLPNPSLSEEEIRKDLCAIVQDWRE
RAVQYLRLVDHTIVVTAEDDTLEYTGEEGTMLFRIGDRVTVISRVTEEEF
NGTITNIAAEEVGCFEIISPSVAYALVSHSFC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013907Sds3