mRNA_C-australica_Contig_999.7.3 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_999.7.3 vs. uniprot
Match: A0A835ZC92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC92_9STRA) HSP 1 Score: 250 bits (638), Expect = 4.120e-67 Identity = 169/497 (34.00%), Postives = 233/497 (46.88%), Query Frame = 2 Query: 473 VAENIHPCFWGY--HDVHNDDGWDVHSTHPVYFGAKAETFSHST-QSGLATREALKVVLAMGSPAEQKDA---WHIFPVAPVNHGIVRQEMFEPARRYDLGGLIHPSCFGHKYTRESEDSALSSPVMFRYKLLHKQRPVTLGTSGV--------------------TRSTFVKY----EPGDPCPICLIHRPGCPLCWDFPKGWEPKQFAWEGPQEEIRRAQEAAAAEKLHQLDAKNQEQLGAELVPGDQALHLGGNDNDSQASPKPELHTNLTTDKALRLWRMIKETYVNLFIKGVPCGTVTFLRVGSHYPVHVLYDMFRANSCEGTEQDCVIFLPTVAGVYCLDNQNIAETDISLGVHTGDLPVSRYHIGDLGASKTTLCLLQTHFLSKVKIVENLRHFLHTELPPTTVYQDDVVHHLHGLPVKPQEDPVQQYLVKLMRIRAVQQLQVEEEDRAYDIARRSKALLEAEKARKESVLDRRRAEDSKLIKGTTEWRA 1873
AE +HP F GY + WD + PVYFGA + + + QS A K + G A W +FP AP+N G VRQ+ F AR YD G ++HPS FG R + A T ++Y PGD CP CL+ + GCP CW++P GW + FA+EGP A AA E L GA + L L HT LTT+ A+RL+R I+++++ +K +PCG VT L + +PVH LY M RA S G +D +FLPT AG + LD AETD+SLGVHT LP++RY+ L A+++T+CLL + F S VK E++R +L EL Y V HL P P++DPVQ+ LV L+ RA + E+DR + R + + EA AR + ++ AE ++ + T WRA
Sbjct: 649 AAEALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAIIRVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGEVVHPSLFGLSTLRLATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELL----------AGAGSAAPPERLPL---------------HTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYN---LTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQDPVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEA--ARIRAAVE---AEQARCPRAYTPWRA 1112
BLAST of mRNA_C-australica_Contig_999.7.3 vs. uniprot
Match: A0A6H5K0L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L0_9PHAE) HSP 1 Score: 175 bits (444), Expect = 6.810e-46 Identity = 108/305 (35.41%), Postives = 157/305 (51.48%), Query Frame = 2 Query: 800 ESEDSALSSPVMFRYKLLHKQRP---VTLGTSGVTRSTFVKYEPGDPCPICLIHRPGCPLCWDFPKGWEPKQFAWEGPQEEI-----------------------------------RRAQEAAAAEKLHQLDAKNQEQLGAELVPGDQALHL-----GGNDNDSQASPKPELHTNLTTDKALRLWRMIKETYVNLFIKGVPCGTVTFLRVGSHYPVHVLYDMFRANSCEGTEQ------DCVIFLPTVAGVYCLDNQNIAETDISLGVHTGDLPVSRYHIGDLGASKTTLCLLQTHFLSKVKIV 1567
+ +DS SPV F Y L+ K R R FV + G CP+CL+ +PGCP CWDFP+G+ P FA+ GP E+ R AAAA+++ A + G + + +H G DS+ KPELHT+LTT A+ L+R I + + +F+K +PCGT T L + S +PV L+D++RAN+ EG D + LPT+ G++ LDN+N+ ETD +LGVHTG+LP+S Y+ L K+T+ +L T FLSK+K++
Sbjct: 5 DDQDSRHQSPVFFGYDLVKKPRSKGGALEDHEKPKREDFVLHRRGKSCPVCLVGKPGCPCCWDFPEGYVPHDFAYLGPFEDSSASRPTSRRSSRSTVDGRGSVSSLPPVGDKTGSTPRTPAAAAAADRVETGAAASGSPPGRRVSLLMKGMHGVITTDKGEGADSEEKEKPELHTDLTTSAAITLYRSIVGSTIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTCVFMGGIDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYN---LTTPKSTVTVLCTTFLSKIKVI 306
BLAST of mRNA_C-australica_Contig_999.7.3 vs. uniprot
Match: A0A7S2MF12_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF12_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.240e-30 Identity = 76/246 (30.89%), Postives = 122/246 (49.59%), Query Frame = 2 Query: 917 EPGDPCPICLIHRPGCPLCWDFPKGWEPKQFAWEGPQEEIRRAQEAAAAEKLHQLDAKNQEQLGAELVPGDQALHLGGNDNDSQASPKPELHTNLTTDKALRLWRMIKETYVNLFIKGVPCGTVTFLRVGSHYPVHVLYDMFRANSCEGTEQDCVIFLPTVAGVYCLDNQNIAETDISLGVHTGDLPVSRYHIGDLGASKTTLCLLQTHFLSKVKIV-ENLRHFLHTELPPTTVYQDDVVHHLHGL 1651
P D CPICL+ +PGCP CW+FPKG+ P + +G + E H L KP++HT+LTT AL+ +R I +Y N+ +K +P G V LRV V L+ +FR+ S G +F+PTV G+YCLDN + E++++L ++T D+ + RY G +G + + L H + ++ + + +H + ++ T + D++HHL GL
Sbjct: 138 RPEDICPICLVRKPGCPFCWEFPKGFAPVDYEHKGKKGE-------------HDL-----------------------------VDTKPKIHTDLTTVGALQTFRHINSSYTNVLVKTIPAGPVIELRVLPTDNVGYLHHLFRSKSEFGMHDQARLFIPTVNGIYCLDNDQVPESELTLALYTADIALQRY--GFMGEAFPVVLL---HAMGEIGLFHDTFQHLIERQVHLPTQPKTDIIHHLEGL 336 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_999.7.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_999.7.3 >prot_C-australica_Contig_999.7.3 ID=prot_C-australica_Contig_999.7.3|Name=mRNA_C-australica_Contig_999.7.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=606bp MQKMASLAATGVGTVEDLSERRKRLLRHREKQRALKAAQKARAQMKASKLback to top mRNA from alignment at C-australica_Contig_999:7825..12882+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_999.7.3 ID=mRNA_C-australica_Contig_999.7.3|Name=mRNA_C-australica_Contig_999.7.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=5058bp|location=Sequence derived from alignment at C-australica_Contig_999:7825..12882+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_999:7825..12882+ >mRNA_C-australica_Contig_999.7.3 ID=mRNA_C-australica_Contig_999.7.3|Name=mRNA_C-australica_Contig_999.7.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1818bp|location=Sequence derived from alignment at C-australica_Contig_999:7825..12882+ (Chrysoparadoxa australica CS_1217)back to top |