mRNA_C-australica_Contig_998.4.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_998.4.2 vs. uniprot
Match: D8LNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW9_ECTSI) HSP 1 Score: 229 bits (584), Expect = 2.260e-62 Identity = 176/516 (34.11%), Postives = 254/516 (49.22%), Query Frame = 1 Query: 394 GIGDKINDLKPGTTAAIKAKERAAAAKSKKKV-------------KGTGKAGEKDEGEAPPKGALEYVCV--MEEETAERVWQAAQDLQHNVIDKVLKEMNRDLGEKFQAIVAKGNACLVIVQECEKHVTAAFAHLKGKMSTGADPAARQGSGASASAE------EAHDFWALDMNYRVAASQQALVWAHVRGELAKLFNEMKDLEVNRRNAIKMALERLVQAQDELYRGLQPLKDPVLLMLGRINADPRALDAEIRNAMRGGVADIESSERQS---------KKKDSAAQPAANLDGPP--------------EPTSGEFMKSLSSPLESPFIRRMTLLEWRKEGMLSSKWQHSLGVLTHDGFLQLFDLPKSLTKDIGKKIGKSKARVASPTTDVAFKALVPCLDVEAALAALLKKKEMNLLGSDIGVPVPPSITLNVRFCDSRFKPEGAGASDCTFEVTEITKNEGMSRMVRDFNQRQVLLRGANQSDMVDWVVKLQQIRR---KALEDMKPGE 1800
G D+++ L+PGTT A++ KER K+ K +G+G D G PP+ A C+ MEE TA R Q+ VIDK L M + L ++F +V +G ACL ++ E + A+ + ++ R+ S A A+A D W DMNYRVA +QQA VW V +L LF MKD+EV RR AI+ L +VQ QD L+R L LK+PV+ L RIN D LD E+R MR G A + + +++ PA E +F+ L SPL S I R T+LE R++ M++S+W L +LTHD +L LFD+P+ + + + T AF LVP +V A L K K+ + S G+PVPPS+ +++ C FKP+G SD TFE+TEI G+ + +DF + + LRG +Q MVDWV +++++ R KA+ D G+
Sbjct: 156 GDRDRVDSLEPGTTEALREKERR---KNNHKEWPPQQLPLPPQQRRGSGT----DGGGLPPQPASALDCLFEMEEYTAMRTIDMCQEAHVTVIDKQLNAMVKKLDDRFAEMVGQGTACLRLMHSAEMNSAKAYGRYQEVVTASLG---REASPARATAPLTLRDVAGSDVWLADMNYRVAVTQQARVWKGVSAKLGDLFGRMKDIEVERRKAIQGGLTAMVQLQDALWRDLPALKEPVVHTLDRINVDRHLLDQEVRQQMRVGAARLLAGRQENGAGXXXXXXXXXXXXXXPAGXXXXXXXXXXXXGGGSVERSETMPADFLAGLESPLASSLIARSTMLERREKAMIASRWILVLAILTHDSYLLLFDVPRGTA---------AHKKQLNARTSEAFAELVPKPEVGAMAVELGKHKDGKGVDSG-GLPVPPSVAIDLSACQVSFKPDGK--SDATFEITEIKPTRGVKTVFKDFEETKFTLRGRSQEAMVDWVCEIKEMGRAGMKAVSDSGKGK 649
BLAST of mRNA_C-australica_Contig_998.4.2 vs. uniprot
Match: A0A6H5KEN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN9_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.050e-48 Identity = 124/322 (38.51%), Postives = 175/322 (54.35%), Query Frame = 1 Query: 214 KSQKFEELRSAHFGGQLQTNSLYWKSFVAIIDRNRTSNARVLTYAEAKVAVLRAYSNELLGIGDKINDLKPGTTAAIKAKERAAAAKSK----------KKVKGTGKAGEKDEGEAPPKGALEYVCV--MEEETAERVWQAAQDLQHNVIDKVLKEMNRDLGEKFQAIVAKGNACLVIVQECEKHVTAAFAHLKGKMSTGADPAARQGSGASASAE------EAHDFWALDMNYRVAASQQALVWAHVRGELAKLFNEMKDLEVNRRNAIKMALERLVQAQDELYRGLQPLKDPVLLMLGRINADPRALDAEIRNAMRGGVA 1125
+++ FE+ R +HFG + +SLYWK FV +I R++ +N R ++YA K++ AY+ L I D+++ L+PGTT A++ KER K ++ +G+G D G PP+ A C+ MEE TA R Q+ VID L M + L E+F +V +G ACL ++ E + A+ + ++ + R+ S A A+A D W DMNYRVA +QQA VW V +L LF +MKD+EV RR AI+ L +VQ QD L+R L LKDPVL L RIN D LD E+R MR G A
Sbjct: 138 ETRTFEQRRHSHFGEKYDGDSLYWKCFVELIRRSQANNRRAISYATQKLSATHAYAKSLYAIRDRVDSLEPGTTEALREKERRKNNHKKWPPQQLPLPPQQRRGSGT----DAGGLPPQPASALDCLFEMEEWTAMRTIDMCQEAHVTVIDNQLNAMVKKLDERFAEMVGQGTACLRLMHSAEMNSVKAYGRYQEIVTASLE---REASPARATAPLTLRDVAGSDIWLADMNYRVAVTQQARVWKGVSAKLGDLFGKMKDIEVERRKAIQGGLTAMVQLQDALWRDLPALKDPVLHTLDRINVDRHLLDQEVRQQMRVGAA 452
BLAST of mRNA_C-australica_Contig_998.4.2 vs. uniprot
Match: A0A836CKX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX7_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.800e-47 Identity = 132/347 (38.04%), Postives = 182/347 (52.45%), Query Frame = 1 Query: 223 KFEELRSAHFGGQLQTNSLYWKSFVAIIDRNRTSNARVLTYAEAKVAVLRAYSNELLGIGDKINDLKPGTTAAIKAKERAAAAKSKKKVKGTG-----------------------------------KAGEKDEGEAPPKG------------ALEYVCVMEEETAERVWQAAQDLQHNVIDKVLKEMNRDLGEKFQAIVAKGNACLVIVQECEKHV---TAAFAHLKGKMSTGADPAARQGSGASASAEEAHDFWALDMNYRVAASQQALVWAHVRGELAKLFNEMKDLEVNRRNAIKMALERLVQAQDELYRGLQPLKDPVLLMLGRINADPRALDAEIRNAMR 1113
+FEE RS++F Q N LYW+SFV II RN+TSN + ++Y AK+A RAY+ L GI D + K GTTAA++ +ERA A K + +G G +A + + PP+G ALE++ MEE++A + +++ +V+ K+L+ M DLGE+F +VA G+ACL ++ + E T L+ AA Q GA+A+ D W DM YRVA +QQ +L LF MKDLEVNRR AI+ AL L+QAQD ++R L LKDPVL +L RIN D R LD E+R+AMR
Sbjct: 3 RFEEQRSSYFSTLFQNNQLYWQSFVEIIRRNQTSNDKTISYLTAKLAAARAYAQLLYGIRDSVTGNKMGTTAALRERERAGA-KKEAAARGRGASVLSVLRVIMDGHNDSCMRLTACADAAMSSAAMRQASARASSQLPPRGTSEMGSSGRPPSALEHMFDMEEKSAMMMLTFCDEMESDVLGKMLQAMATDLGERFTRMVATGDACLKVLSDNEASTVKATTLVGSLREPAPGSVAAAAAQEEGAAAAPRS--DVWITDMAYRVAVTQQLAACDAASAQLGALFGHMKDLEVNRRTAIRNALLSLLQAQDLVWRQLPILKDPVLQVLERINTDRRFLDGEVRDAMR 346
BLAST of mRNA_C-australica_Contig_998.4.2 vs. uniprot
Match: A0A7S1TPW4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPW4_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.700e-31 Identity = 144/567 (25.40%), Postives = 242/567 (42.68%), Query Frame = 1 Query: 226 FEELRSAHFGGQLQTNSLYWKSFVAIIDRNRTSNARVLTYAEAKVAVLRAYSNELLGIG------DKINDLKPGTTAAIKAKERAAAAKSKKKVKGTGKAGE-----------------KDEGEAPPKGA---LEYVCVMEEETAERVWQAAQDLQHNVIDKVLKEMNRDLGEKFQAIVAKGNACLVIVQECEKHVTAAF------AHLKGKMSTGADPAARQGSGASA--SAE-------EAHDFWALDMNYRVAASQQALVWAHVRGELAKLFNEMKDLEVNRRNAIKMALERLVQAQDELYRGLQPLKDPVLLMLGRIN---ADPRALDAEIRNAMRGGVADIESSERQSKKKDSAAQPAANLDGPPEPTSGEFMKSLSSPLESPFIRRMTLLEWRKEGMLSSKWQHSLGVLTHDGFLQLFDLPKSLTKDIGKKIGKSKARVASPTTDVAFKALVPCLDVEAALAALLKK--------KEMNLLGSDIGVPVPPSI-------TLNVRFCDSRFKPEGAGASDCTFEVTEITKNEGMSRMVRDFNQRQVLLRGANQSDMVDWVV 1749
FEE R F + N YW++ I+D + N+++LT E +VA + ++ LL + + +++ K +K +++ A K+ K+ G + E K+E E G + V + +++ ++ ++ L+ ++D L + K AI G + + + E V + A+ + + P +G GA+ +AE E D W + YR A + W G L LF E K E RR I+ +L R + Y GL P+ ++G + DP+ +DAEI M+ VA+ ++ +A + N + E + SL+SPL SP ++++ +L+ KEG + KW L V T DG L L+ +P + K K PT + A +++P +++ A A KK E + D+ V PS TL + + FKP A +D TFE+TE+ G+ +R ++V+LRG Q+DMVDWVV
Sbjct: 41 FEERRRRVFEERFNANETYWRALREILDDSLAENSKLLTILELQVAAEKEHAGALLSLPARVRMMETVSNEKKAEHIRVKQQKKEKANKAAKRKSSMGGSDERRSRQASFGPASVVTEAKEESETQSDGGPRTVSAVMALAQQSGSQLLAYSESLKAGLVDTELTPAKDEFASKAAAITKTGALLIAALHKAEASVLQTYGAFLDVANEYERYGSQGVPGMPEGFGAARDLAAETGNDPVIEMQDLWLEEFRYRTAVGLLQMCWQQATGSLGALFTEAKAAEALRRTRIQESLRRYAGSIGNQYAGLSA---PITALIGAVERQQTDPQGVDAEILAKMQVLVAE-------DPQRAAAESKSTNAEV------NELLGSLNSPLSSPMVKKVAVLQL-KEGGILGKWTPVLAVATVDGMLHLWKIPSDICKKAATKNW--------PTVEEALPSVLPKPNLDVADDAKAKKLDSASAKVDEDVVDEHDVDEEVMPSASNIVADRTLCITNTVTDFKPSSA-RNDTTFELTELVSTHGVESFMRGSKNKKVVLRGPTQNDMVDWVV 581
BLAST of mRNA_C-australica_Contig_998.4.2 vs. uniprot
Match: A0A7S2P3G9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3G9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.700e-6 Identity = 52/211 (24.64%), Postives = 88/211 (41.71%), Query Frame = 1 Query: 832 HDFWALDMNYRVAASQQALVWAHVRGELAKLFNEMKDLEVNRRNAIKMALERLVQAQDELYRGLQPLKDPVLLMLGRINADPRALDAEIRNAMRGGVADIESSERQ---------SKKKDSAAQPAANL----DGPPE------------------PTSGEFMKSLSSPLESPFIRRMTLLEWRKEGMLSSKWQHSLGVLTHDGFLQLFDL 1371
+D W + YRVA + W L+KLFN++KD+EV RR ++ + +L+Q Q+ + GL VL+ L + +P + + +A+R ER+ + DS+ + NL PE E M +SSPL S + +L ++ + W+ +L + T D +L FD+
Sbjct: 255 NDMWLHEARYRVAVGLLSSCWNKCSATLSKLFNKVKDVEVERRICLRELMIQLMQRQEVEWMGLSSTGAGVLVNLASTSIEPAVIHQGLHDAIRREAKKNAQKERERILQERAQNDRDADSSQRSINNLRISSSSIPELLENKISSDDLDNDHIVPARKDEIMMEISSPLSSELLGAAQVLRRKRCSGIFKSWRSTLAITTADQYLHFFDV 465 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_998.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_998.4.2 >prot_C-australica_Contig_998.4.2 ID=prot_C-australica_Contig_998.4.2|Name=mRNA_C-australica_Contig_998.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=416bp MEEETAERVWQAAQDLQHNVIDKVLKEMNRDLGEKFQAIVAKGNACLVIVback to top mRNA from alignment at C-australica_Contig_998:6469..10925- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_998.4.2 ID=mRNA_C-australica_Contig_998.4.2|Name=mRNA_C-australica_Contig_998.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4457bp|location=Sequence derived from alignment at C-australica_Contig_998:6469..10925- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_998:6469..10925- >mRNA_C-australica_Contig_998.4.2 ID=mRNA_C-australica_Contig_998.4.2|Name=mRNA_C-australica_Contig_998.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1248bp|location=Sequence derived from alignment at C-australica_Contig_998:6469..10925- (Chrysoparadoxa australica CS_1217)back to top |