mRNA_C-australica_Contig_997.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_997.4.1
Unique NamemRNA_C-australica_Contig_997.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_997.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_997contigC-australica_Contig_997:3825..4291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size248
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.7142856-UTR-C-australica_Contig_997:3824..38591682588864.7142856-UTR-C-australica_Contig_997:3824..3859Chrysoparadoxa australica CS_1217UTRC-australica_Contig_997 3825..3859 -
1682588864.7475805-UTR-C-australica_Contig_997:4207..42911682588864.7475805-UTR-C-australica_Contig_997:4207..4291Chrysoparadoxa australica CS_1217UTRC-australica_Contig_997 4208..4291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.726809-CDS-C-australica_Contig_997:3859..39021682588864.726809-CDS-C-australica_Contig_997:3859..3902Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 3860..3902 -
1682588864.7353544-CDS-C-australica_Contig_997:4121..42071682588864.7353544-CDS-C-australica_Contig_997:4121..4207Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 4122..4207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_997.4.1prot_C-australica_Contig_997.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_997 3860..4207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_997.4.1

>prot_C-australica_Contig_997.4.1 ID=prot_C-australica_Contig_997.4.1|Name=mRNA_C-australica_Contig_997.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=43bp
MWCGMIRNIGSRNMGAMGEHYPPSLQEPSDALLCLSCCCPSS*
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mRNA from alignment at C-australica_Contig_997:3825..4291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_997.4.1 ID=mRNA_C-australica_Contig_997.4.1|Name=mRNA_C-australica_Contig_997.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=467bp|location=Sequence derived from alignment at C-australica_Contig_997:3825..4291- (Chrysoparadoxa australica CS_1217)
GTTTTTCGGGTTGATTTTTCCCTTTGTACACCCTTTCGAGCAGAGCCAAG
GAAAGCATCTCTCTCTGTCTCCATATATTTCCTAATGTGGTGCGGTATGA
TTAGGAACATTGGGAGCAGGAACATGGGAGCAATGGGGGAACATTATCCC
CCTTCACTTCAAGAACCCAGGTAAGCTAAGGGAGTAAGCCTTTGAAAGGC
CTCGTTCAGGACAGACTTGCCAAATGTACGGCATAGAGAGCTTGAGATAC
CATGCAGATTCCCTACTTTAAACTGCAGTTGGTTCCTCTACTCTCCCCTT
CACTTCCTTTAGTTCATCAGGCACCTCCACTTCTCCGAGCCCCAAACTGT
TCCCTTTTAAACTACTCTCTGCATCTCCTCCACCTCCAGCGATGCGCTTC
TCTGCCTCAGTTGCTGCTGTCCTAGCAGCTAATGTTGCTAGCGGGGAGGG
CGCAGCATTCAACTCCG
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Coding sequence (CDS) from alignment at C-australica_Contig_997:3825..4291-

>mRNA_C-australica_Contig_997.4.1 ID=mRNA_C-australica_Contig_997.4.1|Name=mRNA_C-australica_Contig_997.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=129bp|location=Sequence derived from alignment at C-australica_Contig_997:3825..4291- (Chrysoparadoxa australica CS_1217)
ATGTGGTGCGGTATGATTAGGAACATTGGGAGCAGGAACATGGGAGCAAT
GGGGGAACATTATCCCCCTTCACTTCAAGAACCCAGCGATGCGCTTCTCT
GCCTCAGTTGCTGCTGTCCTAGCAGCTAA
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