mRNA_C-australica_Contig_997.10.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_997.10.1
Unique NamemRNA_C-australica_Contig_997.10.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_997.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_997contigC-australica_Contig_997:15553..16894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size592
Hectar predicted targeting categoryother localisation
Exons8
Cds size588
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_997.10.1prot_C-australica_Contig_997.10.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_997 15555..16894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.7769933-CDS-C-australica_Contig_997:15554..155781682588864.7769933-CDS-C-australica_Contig_997:15554..15578Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 15555..15578 -
1682588864.7873704-CDS-C-australica_Contig_997:15648..157081682588864.7873704-CDS-C-australica_Contig_997:15648..15708Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 15649..15708 -
1682588864.8000035-CDS-C-australica_Contig_997:15810..159661682588864.8000035-CDS-C-australica_Contig_997:15810..15966Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 15811..15966 -
1682588864.809908-CDS-C-australica_Contig_997:16051..161441682588864.809908-CDS-C-australica_Contig_997:16051..16144Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 16052..16144 -
1682588864.8188365-CDS-C-australica_Contig_997:16311..163851682588864.8188365-CDS-C-australica_Contig_997:16311..16385Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 16312..16385 -
1682588864.8280222-CDS-C-australica_Contig_997:16546..166281682588864.8280222-CDS-C-australica_Contig_997:16546..16628Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 16547..16628 -
1682588864.8395836-CDS-C-australica_Contig_997:16720..167771682588864.8395836-CDS-C-australica_Contig_997:16720..16777Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 16721..16777 -
1682588864.8587573-CDS-C-australica_Contig_997:16852..168941682588864.8587573-CDS-C-australica_Contig_997:16852..16894Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 16853..16894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_997.10.1

>prot_C-australica_Contig_997.10.1 ID=prot_C-australica_Contig_997.10.1|Name=mRNA_C-australica_Contig_997.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=196bp
PSPNTSAAPTPAPTPAAGDEGVLSRIATVISGETKDSFTVAEQDAFVAAI
QAVSEHYVDRGSLFVQDIAGTARRLRSATQQHSLKETASNTAEVAGLEQS
PRRRLRTRPRVNDANMNSSTAAASVEAGRFNRSKRHALGNDGGMGGSTTG
ASAAQASGKRNLRAGYIEAGGQVHTAPADKSRRLDAADAAIRATFY
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mRNA from alignment at C-australica_Contig_997:15553..16894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_997.10.1 ID=mRNA_C-australica_Contig_997.10.1|Name=mRNA_C-australica_Contig_997.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1342bp|location=Sequence derived from alignment at C-australica_Contig_997:15553..16894- (Chrysoparadoxa australica CS_1217)
CCATCGCCTAATACTAGTGCTGCTCCAACCCCAGCCCCAACGGTGAGAAT
TGAATGTACCCACTATTCCCTCGCACTGGTCCTAACTCTTCTAATGCTGC
CCTATGTGCTTCAGCAGCCAGCTGCAGGTGACGAAGGCGTTTTGTCGAGG
ATTGCTACGGTGATTTCTGGCGAGGTTTGGCGCAACAACACTGATCTGGC
TGCCTGAGATAGCAACTCTTCCTAATGTACAATCAACTCCCCTAAATGCC
CTGTTTCACGGCGCAGACGAAGGATAGCTTTACCGTCGCAGAGCAGGACG
CCTTTGTTGCTGCCATCCAAGCAGTGTCGGAACATTACGTTGACAGAGGT
AAAATAAAATACGAGCTGAAGCGCCTTTTCCTTCAAGTTGCGCTATTCTC
ATCACCTGCCTAGGCTCCTGTGCTTCGTGGCCCAGAAAAAATCAAATTAT
TTTATGTTTACTATTATATATTAACCAAGCAACCCGCTACACTTGCCCCA
ATGAAACAGGCTCATTGTTTGTCCAAGACATAGCGGGTACAGCTCGGAGA
CTGCGTTCAGCAACGCAACAGCACTCTCTTAAGGTGACTCATGTACTCTC
TCTCACTCACGTATAGCTTGGATCAGGGCTTTCCAGGAGCCTGCATCCTC
TATCTCATCTTCCCACTGCTCCTTTTCATCCCTTCCCGCCCTTGCTCATC
CCAATACCAAATTAAAGTAAAATAAAATACTCTAACTTCGGCTGCAATAG
GAGACTGCTTCCAATACGGCCGAGGTTGCTGGTTTGGAGCAGAGTCCAAG
GAGGAGGCTTAGGACACGGCCACGGGTCAACGATGCCAACATGGTACTGC
CGAGCTCCAGACTGCTTTGTCATGCTTGTTAACAGGCTTATATCTCTCTC
CCCCGCTTCCCCCTTTTCACATTCTCAGAATTCTTCGACTGCGGCAGCTA
GCGTGGAGGCTGGAAGATTCAACCGCAGTAAGCGGCATGCCTTGGGCAAT
GATGGCGGGATGGGTGGGAGCACCACTGGAGCAAGTGCTGCTCAGGCCTC
AGGAAAGAGAAATCTGCGTGCAGGCTACATTGAGGTGAGTGGAAGGGCAG
CTCTGTGCACGGTTAAATGATCAAGCTCATCAGGGCACGGATGCCAGCCA
GCTAACTACTCACTCTGCTCTGCTCTGCCTTCTTAGGCTGGTGGGCAGGT
ACACACAGCACCAGCAGACAAGTCCAGGCGACTTGATGCAGCAGATGTAA
GTTTATCAGACTAATTCCCTTAAGTCGTCTCAAAGCATCTCTCTTATGCT
GCCCTTTCCCCGGCAGGCTGCCATTAGGGCAACCTTCTACCT
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Coding sequence (CDS) from alignment at C-australica_Contig_997:15553..16894-

>mRNA_C-australica_Contig_997.10.1 ID=mRNA_C-australica_Contig_997.10.1|Name=mRNA_C-australica_Contig_997.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=588bp|location=Sequence derived from alignment at C-australica_Contig_997:15553..16894- (Chrysoparadoxa australica CS_1217)
CCATCGCCTAATACTAGTGCTGCTCCAACCCCAGCCCCAACGCCAGCTGC
AGGTGACGAAGGCGTTTTGTCGAGGATTGCTACGGTGATTTCTGGCGAGA
CGAAGGATAGCTTTACCGTCGCAGAGCAGGACGCCTTTGTTGCTGCCATC
CAAGCAGTGTCGGAACATTACGTTGACAGAGGCTCATTGTTTGTCCAAGA
CATAGCGGGTACAGCTCGGAGACTGCGTTCAGCAACGCAACAGCACTCTC
TTAAGGAGACTGCTTCCAATACGGCCGAGGTTGCTGGTTTGGAGCAGAGT
CCAAGGAGGAGGCTTAGGACACGGCCACGGGTCAACGATGCCAACATGAA
TTCTTCGACTGCGGCAGCTAGCGTGGAGGCTGGAAGATTCAACCGCAGTA
AGCGGCATGCCTTGGGCAATGATGGCGGGATGGGTGGGAGCACCACTGGA
GCAAGTGCTGCTCAGGCCTCAGGAAAGAGAAATCTGCGTGCAGGCTACAT
TGAGGCTGGTGGGCAGGTACACACAGCACCAGCAGACAAGTCCAGGCGAC
TTGATGCAGCAGATGCTGCCATTAGGGCAACCTTCTAC
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