mRNA_C-australica_Contig_9961.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9961.1.1
Unique NamemRNA_C-australica_Contig_9961.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: A0A222E2P9_9RHOB (3-ketoacyl-ACP reductase n=5 Tax=Rhodobacterales TaxID=204455 RepID=A0A222E2P9_9RHOB)

HSP 1 Score: 451 bits (1159), Expect = 2.190e-159
Identity = 241/250 (96.40%), Postives = 245/250 (98.00%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAEGDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINI+GAAE DRKVM+RADVTSAEQVAKAIGTAKTRFG LHGLVNCAGVAPGEK+VGRDGPHDLDSFARAVSINLVGTFNTMRLAA AI+ AEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKA EFADLVAAIFANPMLNGEVIRLDGALRMTAK
Sbjct:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIDGAAEDDRKVMVRADVTSAEQVAKAIGTAKTRFGCLHGLVNCAGVAPGEKIVGRDGPHDLDSFARAVSINLVGTFNTMRLAAEAIAGAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAEEFADLVAAIFANPMLNGEVIRLDGALRMTAK 250          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: UPI0009807904 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Roseibium aggregatum TaxID=187304 RepID=UPI0009807904)

HSP 1 Score: 398 bits (1023), Expect = 1.150e-138
Identity = 205/250 (82.00%), Postives = 230/250 (92.00%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAEGDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            MDI GKTILVTGA SGLGAGV+ RL+  GAN+VGLDIN++G AE D   M++ DVTS EQV +AI TAKTRF G+HGLVNCAG+APG+K++GRDGPH+L++F+RAV+INL+GTFNTMRLAA A++E EPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMM+GL QEVQ+SLGAKVPFPPRLGKA+EFADLV +IF NPMLNGEVIRLDGALRMTAK
Sbjct:    1 MDIEGKTILVTGAGSGLGAGVMARLLWSGANLVGLDINVDGVAERDNLAMVKTDVTSPEQVTQAIETAKTRFDGVHGLVNCAGIAPGQKIMGRDGPHELEAFSRAVTINLIGTFNTMRLAAEAMAEGEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMSGLSQEVQDSLGAKVPFPPRLGKASEFADLVVSIFRNPMLNGEVIRLDGALRMTAK 250          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: A0A231V2A1_9HYPH (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=A0A231V2A1_9HYPH)

HSP 1 Score: 395 bits (1015), Expect = 1.900e-137
Identity = 208/250 (83.20%), Postives = 229/250 (91.60%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAEGDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            M+  GKTILVTGA+SGLGAGVV+RL+A GANVVGLD+ +E A  GD+  M+RADV S EQVA+AI +AK RFG +HGLVNCAG+APGEK+VGRDGPHDL+SFARAVSINL+GTFNT+RLAA A+ +AEP PDGERGVIVNTASVAAFDGQIGQ AYAASKGGVVSLTLPAARELAR GIRVMAIAPGIFETPM+AGLPQEV++SLGAKVPFPPRLGKA EFADLVAAIFANPMLNG VIRLDGALRMTAK
Sbjct:    1 MNTEGKTILVTGAASGLGAGVVSRLVANGANVVGLDLAVESAEYGDQVAMVRADVASPEQVAEAIKSAKRRFGDVHGLVNCAGIAPGEKIVGRDGPHDLESFARAVSINLIGTFNTLRLAAEAMIQAEPSPDGERGVIVNTASVAAFDGQIGQPAYAASKGGVVSLTLPAARELARFGIRVMAIAPGIFETPMVAGLPQEVRDSLGAKVPFPPRLGKAEEFADLVAAIFANPMLNGAVIRLDGALRMTAK 250          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: UPI001FD5C19E (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Phaeobacter sp. J2-8 TaxID=2931394 RepID=UPI001FD5C19E)

HSP 1 Score: 388 bits (996), Expect = 1.490e-134
Identity = 202/250 (80.80%), Postives = 229/250 (91.60%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAEGDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            MDI GKTILVTGA+SGLGAGV  RL+A GANVVG+DI  +GA++ DR  +++ADVT+ +QVA AI TAK+RFG LHGLVNCAG+APG+K+VGRDGPHDL  F++AVSINL+GTFNTMRLAA A++  + GP+GERGVI+NTAS+AAFDGQIGQAAYAASKGGVVSLTL AARELARSGIRVMAIAPGIFETPMMAGLPQEVQ+SLGAKVPFP RLGKA+EFA+LVAAIFANPMLNGEVIRLDGALRMTAK
Sbjct:    1 MDIEGKTILVTGANSGLGAGVAARLLADGANVVGIDIATDGASQHDRFALVKADVTAPDQVAAAIETAKSRFGALHGLVNCAGIAPGQKIVGRDGPHDLALFSKAVSINLIGTFNTMRLAAEAMAGGDAGPEGERGVIINTASIAAFDGQIGQAAYAASKGGVVSLTLQAARELARSGIRVMAIAPGIFETPMMAGLPQEVQDSLGAKVPFPARLGKASEFAELVAAIFANPMLNGEVIRLDGALRMTAK 250          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: A0A418ZYA2_9RHOB (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Paracoccus aestuarii TaxID=453842 RepID=A0A418ZYA2_9RHOB)

HSP 1 Score: 357 bits (915), Expect = 3.790e-122
Identity = 186/255 (72.94%), Postives = 213/255 (83.53%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAEGDRKV-----MIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            MDI GKTILVTGA+SGLGA V  RL AGGAN+VGLD+N   +A+G  +      +I ADVTSAE+ A+A+  A  RFG +HGLVNCAG+APG ++ GR+GPHDLD FARAV++NL GTFN +RLAA A+   EPG  GERGV+VNTASVAAFDGQ+GQAAYAASKGGVVSLTLPAARELARSGIRVMA+APG+F TPMM G+PQEVQ+SLGA VPFPPRLG+  EFADLVAAIF NPMLNGEVIRLDGALRM  +
Sbjct:    1 MDIEGKTILVTGAASGLGAAVAARLAAGGANIVGLDVNAAASADGRTQPGGKIQLIEADVTSAEEGARALDAALVRFGAVHGLVNCAGIAPGRRITGREGPHDLDLFARAVAVNLTGTFNMLRLAAAAMERNEPGSTGERGVVVNTASVAAFDGQVGQAAYAASKGGVVSLTLPAARELARSGIRVMAVAPGLFATPMMTGMPQEVQDSLGATVPFPPRLGRPEEFADLVAAIFDNPMLNGEVIRLDGALRMAPR 255          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: UPI00065C97A7 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Sphingomonas sp. MEA3-1 TaxID=1647414 RepID=UPI00065C97A7)

HSP 1 Score: 352 bits (902), Expect = 3.250e-120
Identity = 189/252 (75.00%), Postives = 210/252 (83.33%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAEGDRK--VMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            MDIAGKT+LVTGA SGLGA V   L A GAN+VGLDIN + A+ GD +  +M++ADVTSA + A A+  A  RFG +HGLVNCAG+APG ++ GRDGPHDLD FAR V+INL GTFN +RLAA A++  EP   GERGVIVNTASVAAFDGQIGQAAYAASKGGV SLTLPAARELARSGIRVMA+APGIF TPM+ GLP EVQ SLGA VPFPPRLG+  EFADLVAAIFANPMLNGEVIRLDGALRM AK
Sbjct:    1 MDIAGKTVLVTGAGSGLGAAVSAGLSARGANIVGLDINPDPASAGDGREILMLKADVTSASEAAAAVDEALARFGAVHGLVNCAGIAPGARIAGRDGPHDLDLFARVVAINLNGTFNMLRLAAAAMAGNEPDSGGERGVIVNTASVAAFDGQIGQAAYAASKGGVASLTLPAARELARSGIRVMAVAPGIFATPMVTGLPPEVQASLGATVPFPPRLGRPEEFADLVAAIFANPMLNGEVIRLDGALRMAAK 252          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: UPI0019318F83 (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Xanthobacter dioxanivorans TaxID=2528964 RepID=UPI0019318F83)

HSP 1 Score: 319 bits (818), Expect = 2.150e-107
Identity = 177/255 (69.41%), Postives = 196/255 (76.86%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAE-----GDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            M + G+  LVTGA SGLGA V   L+A GA VVG+DIN    A      GD     +ADVTS      A+  AK  FG LHGLVNCAGVAPGEK+VGRDGPH L+SFARAV +NLVGTFN +RLAA AI++ EP  DGERGVI+NTASVAAFDGQIGQAAYAASKGGV +LTLP ARELAR GIRV+ IAPGIFETPMMAGLPQEVQ+SLG  VPFPPRLG+ AE+A LV  I  N MLNGEVIRLDGALRM  +
Sbjct:    1 MKMDGRVFLVTGAGSGLGAAVTRMLVAEGAKVVGVDINAAAGAAIVAELGDAVRFQKADVTSEADGIAAVALAKAAFGHLHGLVNCAGVAPGEKVVGRDGPHQLESFARAVGVNLVGTFNMLRLAADAIAKEEPDADGERGVIINTASVAAFDGQIGQAAYAASKGGVAALTLPVARELARFGIRVVTIAPGIFETPMMAGLPQEVQDSLGKTVPFPPRLGRPAEYAALVKHICENTMLNGEVIRLDGALRMAPR 255          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: A0A1A9GEL2_SHIS7 (3-hydroxy-2-methylbutyryl-CoA dehydrogenase n=2 Tax=Shinella TaxID=323620 RepID=A0A1A9GEL2_SHIS7)

HSP 1 Score: 318 bits (815), Expect = 6.150e-107
Identity = 175/255 (68.63%), Postives = 192/255 (75.29%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAE-----GDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            M I  KT +VTG  SGLGA V   L+  GANVV  D+N E  A      G     IR DVT  +    AI  A  RFG LHGLVNCAGVAPGEK++GRDGPH LDSFAR V INL+GTFN +RLAA AI+  EP  DGERGVIVNTASVAAFDGQ+GQAAYAASKGGV ++TLP ARELARSGIRV++IAPGIFETPMMAG+PQEVQ+SLG  VPFPPRLGK  EFA LV  I  N MLNGEVIRLDGALRM  +
Sbjct:    1 MLIRAKTFVVTGGGSGLGAAVARMLVDEGANVVIADVNAEAGAATVDALGGSTAFIRTDVTQEKDAEAAIDLALARFGHLHGLVNCAGVAPGEKVIGRDGPHRLDSFARTVGINLIGTFNMIRLAAAAIARQEPAADGERGVIVNTASVAAFDGQVGQAAYAASKGGVAAMTLPIARELARSGIRVVSIAPGIFETPMMAGMPQEVQDSLGRSVPFPPRLGKPVEFAALVRHILENVMLNGEVIRLDGALRMAPR 255          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: A0A2T0WMB9_9RHOB (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Donghicola tyrosinivorans TaxID=1652492 RepID=A0A2T0WMB9_9RHOB)

HSP 1 Score: 316 bits (809), Expect = 5.030e-106
Identity = 173/255 (67.84%), Postives = 196/255 (76.86%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDIN-----IEGAAEGDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK 750
            MDI+ K  +VTGA SGLGA V T L+  GA V+  D+N      +  A G   V  R DVTSA     AI  A   FG L GLVNCAGVAPGEK+ GR+GPHDLDSF+RA+ INL+GTFN +RLAA A+ +A PGPDGERGVI+NTAS+AAFDGQIGQAAYAASKGGV +LTLPAARELAR G+RV+ IAPGIFETPMMAGLPQ+VQ+SLGA VPFP RLGK AE+A LV  I  N MLNGEVIRLDGALRM  +
Sbjct:    1 MDISEKAFVVTGAGSGLGAAVATMLVGAGAKVLIADVNEAAGVAQAEALGQGAVFCRTDVTSATDGQAAIDAALNAFGRLDGLVNCAGVAPGEKISGREGPHDLDSFSRAIQINLIGTFNMLRLAADAMVKAAPGPDGERGVIINTASIAAFDGQIGQAAYAASKGGVAALTLPAARELARHGVRVVTIAPGIFETPMMAGLPQDVQDSLGASVPFPSRLGKPAEYAALVRHICENTMLNGEVIRLDGALRMAPR 255          
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Match: A0A1C3W696_9HYPH (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Rhizobium multihospitium TaxID=410764 RepID=A0A1C3W696_9HYPH)

HSP 1 Score: 315 bits (808), Expect = 7.130e-106
Identity = 173/254 (68.11%), Postives = 192/254 (75.59%), Query Frame = 1
Query:    1 MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAE-----GDRKVMIRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLDSFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQIGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQEVQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTA 747
            M I GKT +VTG  SGLGA V   L   GANVV  D+N++         G     IR DVT  +    AI TA  RFG LHGLVNCAGVAPGEK++GR+GPH LDSFAR + INL+GTFN +RLAAVAI++ EP  DGERGVIVNTASVAAFDGQIGQAAYAASKGGV ++TLP ARELARSGIRV+AIAPGIFETPMMAG+PQEVQ+SL   VPFP R GK  EFA LV  I  N MLNGEVIRLDGALRM +
Sbjct:    1 MLIQGKTFVVTGGGSGLGAAVARMLTGEGANVVIADVNVDAGGAIVSELGTNAAFIRTDVTQEKDAQAAIDTAVERFGHLHGLVNCAGVAPGEKIIGRNGPHKLDSFARTIGINLIGTFNMIRLAAVAIAKQEPDADGERGVIVNTASVAAFDGQIGQAAYAASKGGVAAMTLPIARELARSGIRVVAIAPGIFETPMMAGMPQEVQDSLSKSVPFPQRFGKPVEFAALVRHICENVMLNGEVIRLDGALRMAS 254          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9961.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E2P9_9RHOB2.190e-15996.403-ketoacyl-ACP reductase n=5 Tax=Rhodobacterales T... [more]
UPI00098079041.150e-13882.00SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A231V2A1_9HYPH1.900e-13783.203-hydroxyacyl-CoA dehydrogenase n=1 Tax=Notoacmeib... [more]
UPI001FD5C19E1.490e-13480.80SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A418ZYA2_9RHOB3.790e-12272.94SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI00065C97A73.250e-12075.00SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI0019318F832.150e-10769.413-hydroxyacyl-CoA dehydrogenase n=1 Tax=Xanthobact... [more]
A0A1A9GEL2_SHIS76.150e-10768.633-hydroxy-2-methylbutyryl-CoA dehydrogenase n=2 Ta... [more]
A0A2T0WMB9_9RHOB5.030e-10667.84NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
A0A1C3W696_9HYPH7.130e-10668.11NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9961contigC-australica_Contig_9961:69..821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog501479.ACNW01000089_gene2383
PFAMsadh_short
Model size753
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.74e-106
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,2TRPN@28211|Alphaproteobacteria
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
Cds size753
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.453032-CDS-C-australica_Contig_9961:68..8211682588864.453032-CDS-C-australica_Contig_9961:68..821Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9961 69..821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9961.1.1prot_C-australica_Contig_9961.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9961 69..821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9961.1.1

>prot_C-australica_Contig_9961.1.1 ID=prot_C-australica_Contig_9961.1.1|Name=mRNA_C-australica_Contig_9961.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=251bp
MDIAGKTILVTGASSGLGAGVVTRLMAGGANVVGLDINIEGAAEGDRKVM
IRADVTSAEQVAKAIGTAKTRFGGLHGLVNCAGVAPGEKLVGRDGPHDLD
SFARAVSINLVGTFNTMRLAAVAISEAEPGPDGERGVIVNTASVAAFDGQ
IGQAAYAASKGGVVSLTLPAARELARSGIRVMAIAPGIFETPMMAGLPQE
VQESLGAKVPFPPRLGKAAEFADLVAAIFANPMLNGEVIRLDGALRMTAK
*
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mRNA from alignment at C-australica_Contig_9961:69..821-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9961.1.1 ID=mRNA_C-australica_Contig_9961.1.1|Name=mRNA_C-australica_Contig_9961.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=753bp|location=Sequence derived from alignment at C-australica_Contig_9961:69..821- (Chrysoparadoxa australica CS_1217)
ATGGACATTGCAGGCAAGACGATACTGGTCACGGGCGCGAGTTCCGGTCT CGGCGCGGGGGTCGTGACACGGCTCATGGCAGGCGGGGCGAATGTGGTCG GGCTCGACATCAACATCGAGGGCGCGGCAGAGGGTGACCGCAAGGTGATG ATCCGGGCCGATGTGACCTCCGCCGAACAGGTGGCAAAGGCCATTGGGAC CGCGAAAACCCGCTTCGGCGGACTGCATGGGCTGGTGAATTGTGCCGGCG TCGCGCCCGGAGAAAAGCTCGTCGGCCGCGACGGGCCGCATGACCTCGAC AGCTTCGCGCGTGCGGTCTCGATCAACCTCGTCGGCACCTTCAACACGAT GCGCCTCGCGGCTGTGGCCATCTCAGAGGCCGAGCCGGGGCCGGACGGAG AGCGCGGGGTGATCGTCAATACCGCCTCCGTCGCGGCTTTCGACGGCCAG ATCGGCCAGGCGGCCTATGCGGCGTCCAAGGGCGGCGTGGTCAGCCTGAC GCTGCCGGCGGCGCGGGAATTGGCGCGGTCGGGCATCCGTGTGATGGCCA TTGCGCCGGGCATCTTCGAGACGCCGATGATGGCCGGTCTGCCGCAGGAG GTGCAGGAATCGCTTGGCGCCAAGGTGCCGTTTCCGCCGCGCCTCGGGAA GGCCGCGGAATTCGCCGATCTGGTGGCCGCGATCTTTGCCAACCCGATGC TGAACGGCGAGGTGATCCGGCTTGACGGCGCGCTGCGCATGACCGCGAAA TAG
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Coding sequence (CDS) from alignment at C-australica_Contig_9961:69..821-

>mRNA_C-australica_Contig_9961.1.1 ID=mRNA_C-australica_Contig_9961.1.1|Name=mRNA_C-australica_Contig_9961.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=753bp|location=Sequence derived from alignment at C-australica_Contig_9961:69..821- (Chrysoparadoxa australica CS_1217)
ATGGACATTGCAGGCAAGACGATACTGGTCACGGGCGCGAGTTCCGGTCT
CGGCGCGGGGGTCGTGACACGGCTCATGGCAGGCGGGGCGAATGTGGTCG
GGCTCGACATCAACATCGAGGGCGCGGCAGAGGGTGACCGCAAGGTGATG
ATCCGGGCCGATGTGACCTCCGCCGAACAGGTGGCAAAGGCCATTGGGAC
CGCGAAAACCCGCTTCGGCGGACTGCATGGGCTGGTGAATTGTGCCGGCG
TCGCGCCCGGAGAAAAGCTCGTCGGCCGCGACGGGCCGCATGACCTCGAC
AGCTTCGCGCGTGCGGTCTCGATCAACCTCGTCGGCACCTTCAACACGAT
GCGCCTCGCGGCTGTGGCCATCTCAGAGGCCGAGCCGGGGCCGGACGGAG
AGCGCGGGGTGATCGTCAATACCGCCTCCGTCGCGGCTTTCGACGGCCAG
ATCGGCCAGGCGGCCTATGCGGCGTCCAAGGGCGGCGTGGTCAGCCTGAC
GCTGCCGGCGGCGCGGGAATTGGCGCGGTCGGGCATCCGTGTGATGGCCA
TTGCGCCGGGCATCTTCGAGACGCCGATGATGGCCGGTCTGCCGCAGGAG
GTGCAGGAATCGCTTGGCGCCAAGGTGCCGTTTCCGCCGCGCCTCGGGAA
GGCCGCGGAATTCGCCGATCTGGTGGCCGCGATCTTTGCCAACCCGATGC
TGAACGGCGAGGTGATCCGGCTTGACGGCGCGCTGCGCATGACCGCGAAA
TAG
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