mRNA_C-australica_Contig_996.4.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: A0A836CC06_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC06_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.160e-35 Identity = 69/125 (55.20%), Postives = 81/125 (64.80%), Query Frame = 3 Query: 222 MGVGQRKXXXXXXXXXXXXXXXXXXXXXKSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEPAHPHL 596
MG+GQ+K K R MD+DQ+QD+LEK E KF YDDDLPG GQ YC PCARHFTD G L H KSK+HK R++DVAQ+KY+Q+EAD AGK+KEVY PAHP L
Sbjct: 1 MGIGQKKSKGTSKGSKTKNKQYKRALDTKRRPMDIDQVQDILEKVAETGKPLKFAYDDDLPGGGQFYCAPCARHFTDQGTLDTHTKSKLHKRRLKDVAQKKYTQKEADAGAGKSKEVYAPAHPEL 125
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: A0A024UJ99_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJ99_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.840e-30 Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 3 Query: 306 KSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEPAHP 590
KSR D+DQIQD L+KE E K FE D+DLPG GQ+YCTPC RHF A +H+ SKVHK RM+DVAQE+Y+Q+EA+RAAGK+ E Y PAHP
Sbjct: 25 KSRSRDIDQIQDDLKKEEETGVKMTFELDEDLPGLGQYYCTPCGRHFITANARDVHIASKVHKRRMKDVAQEQYTQKEAERAAGKSIETYTPAHP 119
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: A0A6G0XDP3_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDP3_9STRA) HSP 1 Score: 117 bits (294), Expect = 7.050e-30 Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 3 Query: 309 SRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEPAH 587
+R D+DQIQD L+KE E AK FE D+DLPG GQ+YCTPCARHF A +H+ SKVHK RM+DVAQE+YSQ+EA+RAAGK+ EVY P H
Sbjct: 26 NRARDIDQIQDDLKKESETGAKITFEMDEDLPGLGQYYCTPCARHFITANARDVHIASKVHKRRMKDVAQEQYSQKEAERAAGKSIEVYTPVH 118
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: A0A024G9F2_9STRA (C2H2-type domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9F2_9STRA) HSP 1 Score: 115 bits (289), Expect = 4.420e-29 Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 3 Query: 306 KSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEPAHP 590
K R DVDQIQD L+ E + KFE D+DLPG GQ+YCTPCARHF DA LHV++KVHK R++DV QE+Y+Q EAD AGKT+E Y PAHP
Sbjct: 25 KRRSRDVDQIQDDLKLESQQNKPLKFEIDEDLPGLGQYYCTPCARHFIDATTRDLHVRTKVHKRRLKDVRQEQYTQREADLGAGKTREEYVPAHP 119
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: A0A1V9ZQ49_9STRA (C2H2-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ49_9STRA) HSP 1 Score: 115 bits (287), Expect = 9.590e-29 Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 3 Query: 306 KSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEP 581
KSR D+DQIQD L+KE+ F+ D+DLPG GQ YCTPC RHF DA A+H+KSKVHK RM+DVAQE+YSQ+EADRAAGKT E Y P
Sbjct: 25 KSRNRDIDQIQDDLKKEQLTGKSMTFQIDEDLPGLGQFYCTPCGRHFMDAVARAVHLKSKVHKRRMKDVAQEQYSQKEADRAAGKTIETYVP 116
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: F0WBU9_9STRA (Uncharacterized protein AlNc14C53G4140 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBU9_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.460e-28 Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 3 Query: 306 KSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEPAHP 590
K R DVDQIQD L+ E + + KFE D+DLPG GQ+YCTPCARHF DA LH+++KVHK R++DV QE+Y+Q EAD AGKT+E YE A P
Sbjct: 25 KRRHRDVDQIQDDLKLETQQKKPLKFEIDEDLPGLGQYYCTPCARHFIDASTRELHIRTKVHKRRLKDVLQEQYTQREADLGAGKTREQYEAARP 119
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: A0A1V9ZTM5_9STRA (C2H2-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTM5_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.030e-27 Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 3 Query: 306 KSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEP 581
KSR D+DQIQD L+KE FE D+DLPG GQ YCTPC RHF DA A+H+KSKVHK R++DVAQE+YSQ+EA+RAAGK+ E Y P
Sbjct: 25 KSRSRDIDQIQDDLKKEAATGKPMAFEVDEDLPGLGQFYCTPCGRHFMDAVARAVHIKSKVHKRRLKDVAQEQYSQKEAERAAGKSVEAYVP 116
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: W4G9A2_9STRA (C2H2-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9A2_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.930e-27 Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 3 Query: 306 KSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEPAH 587
KSR D+DQIQD L+KE AK FE D+DLPG GQ YCTPC RHF A +H+ SKVHK R++DVAQE+Y+Q EA+RAAGK+ E Y PAH
Sbjct: 25 KSRSRDIDQIQDDLKKEVATGAKIAFEADEDLPGLGQFYCTPCGRHFITANARDVHIVSKVHKRRLKDVAQEQYTQNEAERAAGKSIEAYTPAH 118
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: T0QYK1_SAPDV (C2H2-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QYK1_SAPDV) HSP 1 Score: 109 bits (272), Expect = 2.440e-26 Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 3 Query: 306 KSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEVYEP 581
KSR D+DQIQD L+KE FE D+DLPG GQ YCTPC RHF D +H+KSKVHK R++DVAQE+YSQ+EA+RAAGK+ E Y P
Sbjct: 40 KSRSRDIDQIQDDLKKEETTGTVMTFELDEDLPGLGQFYCTPCGRHFMDEVARTVHIKSKVHKRRLKDVAQEQYSQKEAERAAGKSVEAYVP 131
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Match: A0A6H5JIE6_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 3.310e-26 Identity = 69/117 (58.97%), Postives = 79/117 (67.52%), Query Frame = 3 Query: 222 MGVGQRKXXXXXXXXXXXXXXXXXXXXXKSRRMDVDQIQDMLEKEREHQAKTKFEYDDDLPGAGQHYCTPCARHFTDAGVLALHVKSKVHKTRMRDVAQEKYSQEEADRAAGKTKEV 572
MG+GQRK XXXXXXXX RR DVDQIQD L E E + FE DDDLPG GQ YCTPCARHFTD + H++SK+HK RM+DVAQE+Y+Q EA+R AG TKE
Sbjct: 1 MGLGQRKSKGGKGGHKTKNKXXXXXXXXXXRRKDVDQIQDELMVEEEKGEEMVFEVDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKET 117 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_996.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_996.4.2 >prot_C-australica_Contig_996.4.2 ID=prot_C-australica_Contig_996.4.2|Name=mRNA_C-australica_Contig_996.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=168bp MGVGQRKSKGNKGGHKAKNKSYKKAHATKSRRMDVDQIQDMLEKEREHQAback to top mRNA from alignment at C-australica_Contig_996:9932..11511- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_996.4.2 ID=mRNA_C-australica_Contig_996.4.2|Name=mRNA_C-australica_Contig_996.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1580bp|location=Sequence derived from alignment at C-australica_Contig_996:9932..11511- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_996:9932..11511- >mRNA_C-australica_Contig_996.4.2 ID=mRNA_C-australica_Contig_996.4.2|Name=mRNA_C-australica_Contig_996.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=504bp|location=Sequence derived from alignment at C-australica_Contig_996:9932..11511- (Chrysoparadoxa australica CS_1217)back to top |