mRNA_C-australica_Contig_996.1.7 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_996.1.7
Unique NamemRNA_C-australica_Contig_996.1.7
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A835ZHE9_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE9_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.710e-49
Identity = 105/321 (32.71%), Postives = 154/321 (47.98%), Query Frame = 1
Query:  211 LCY-HPTLSGRKGYFGSLSVRQTGSLEKLRVLVKAGKLR-------MSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKLLGKYSED--------------------AGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFMERDGVVVEVYGNPGQWR 1089
            +C+ H +  G KGY G+L+  QT +L  LR  V  G+ +       +++ C     +E LD C++RYLRA+ +D  +    L EN+ WR +     L    PA VLG    E+  L+A  YPHW LG DR GRPV LY                                      RYG+F    LL+ TT   L  YH+WE E + +LL + +                      +G  +D  +LILD  G+ +GQ+T + + +LR +AETD +HYP R  +T+V+N PPLF +IWG I+G +E     + V  +  +W+
Sbjct:    1 MCHPHSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLY--------------------------------------RYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEGSSADLRVLSDRKRWQ 283          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A836CLC3_9STRA (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC3_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.770e-47
Identity = 105/307 (34.20%), Postives = 160/307 (52.12%), Query Frame = 1
Query:  241 KGYFGSLSVRQTGSLEKLRVLVKAGKLRMSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGRAL 1158
            +G+ G LS  Q G+L +L  LV++  L ++++   G  AEPL LC++R+LRAN ++  KA  QLEEN+ +R   +V  L     + VLGC P+ +     +++PHW  G DR+GRPV                        LC+              +YG F  +ELL +TT+ ++V  H+WE E   +L+ + S   G IVD+  +I+D GGM + QVT DFI +++++A  D   YP   G  F+IN P LF  +W      ++ R    ++++  P  W+  L + I    LPP  GGTG  L
Sbjct:   32 EGFHGQLSEPQEGALRELYGLVESLNLDLTLV--RGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAIN----RYFPHWDFGEDRVGRPV------------------------LCK--------------QYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 294          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A7S0GY37_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GY37_9EUKA)

HSP 1 Score: 144 bits (362), Expect = 5.040e-35
Identity = 92/319 (28.84%), Postives = 152/319 (47.65%), Query Frame = 1
Query:  217 YHPTLSGRKGYFGSLSVRQTGSLEKLRVLVKAGKLRMSVLCGE-GSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGRALQDT 1167
            YH  L+ + GY   L+ +Q  +L+ +++ +   K+   VL G     AE  DL ++R+LRA  ++  KA   L ++I WR ++DV+ L+      VLGC P+ M T    H P WH G D+ GRPV   +                                      +G+F   E+ K T+L  L+D+H+W+ME +  L  + S+   HIV+T T+++D     L   T +  K L ++++ D  H+P R G   V+NAP L  + W  I+G+++ +    V++   P ++   L   I    L    GG  ++L+ T
Sbjct:   56 YHKDLNHKDGYLNCLTDKQKQALKDIKIKITEEKI---VLEGYFDPEAETQDLILLRFLRARNFEVKKAYKLLSDDIAWRKDKDVKSLKKKTEREVLGCDPKLMHT----HLPVWHQGCDKQGRPVIYKI--------------------------------------FGNFQIWEVTKHTSLEKLIDHHLWQMESYMDLTRENSKKFRHIVETVTVVVDAKDWRLSLFTKEATKFLYRISKVDSDHFPERMGRLIVVNAPYLLSVAWKVIRGWLDPKTQKKVQIVRGPNEYEPILKDWISESSLCDEYGGKAKSLRVT 329          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A843U0L8_COLES (CRAL-TRIO domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U0L8_COLES)

HSP 1 Score: 106 bits (265), Expect = 9.160e-21
Identity = 76/259 (29.34%), Postives = 116/259 (44.79%), Query Frame = 1
Query:  376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146
            M+R+LRA K+D  KAK    + ++WR E            T+L     +    V +HYPH H G D+ GRP++                                        R G    N+LL+VTT++  + YH+ E E    +     S  A   +D  T ILD  G+ L        ++L ++ + DG +YP      F+INA P F M+W T+K F++ +    + V GN  +++ KL + ID  ELP +LGG+
Sbjct:  103 MLRFLRARKFDNEKAKQMWSDMLQWRKEFGAD--------TILDDFEFKEVEEVLEHYPHGHHGVDKEGRPIYFE--------------------------------------RLGKIDCNKLLQVTTMDRYLKYHVREFERLFAVKFPACSVAAKRHIDQSTTILDVQGVGLKNFNKSARELLTRLQKIDGDNYPESLCRMFIINAGPGFRMLWSTVKSFLDPKTTAKIHVLGN--KYQSKLLEVIDASELPDFLGGS 313          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A5B8MUT4_9CHLO (CRAL-TRIO lipid binding domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MUT4_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 6.320e-20
Identity = 68/257 (26.46%), Postives = 117/257 (45.53%), Query Frame = 1
Query:  382 RYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGA-DRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHH-HKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFMERDGVV-VEVYGNPGQWRDKLAKQIDPRELPPYLGG 1143
            R+L+A +WDE KA    +  ++WR E    G +  H        P++ E L  K +P ++L   D+ GRP+++                                         G  +   LL+VTT+  ++ YH++E E    ++  K S   GH +     I+D  G+   Q        L+Q+   D ++YP   G  F+INAP +F MIW  +K ++++  +  ++VYG+   + +KL   +DP +LP ++GG
Sbjct:   68 RFLKARQWDEEKAIDMYKNTVRWRREF---GTDQIHKTFSF---PEKKEVL--KIFPQYYLRTQDKFGRPIYIN--------------------------------------EVGKINVEALLRVTTVERMIQYHVYEWEKLIREIYPKCSAHVGHKIFQSFSIIDLKGLSYKQFNKTTRSFLKQITNIDQEYYPEHLGQMFIINAPKIFSMIWSVVKLWLDKRTLAKIKVYGS--DYHEKLFNFVDPHDLPEHIGG 276          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A0D2PN28_GOSRA (CRAL-TRIO domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2PN28_GOSRA)

HSP 1 Score: 102 bits (254), Expect = 1.020e-19
Identity = 74/259 (28.57%), Postives = 118/259 (45.56%), Query Frame = 1
Query:  376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146
            M+R+LRA K+D  KAK    + ++WR E            T++     +  + V K+YP  + G D+ GRPV++                                       R G    N+L+KVTT++  + YH+ E E    +     S  A   ++  T ILD  G+ L        ++L+ + + DG +YP      F+INA P F M+WGT+K F++ +    + V GN  +++ KL + ID  +LP +LGGT
Sbjct:  102 MLRFLRARKYDLDKAKLMWADMLQWRKEFGAD--------TIMEDFDFKEYSEVVKYYPQGYHGVDKDGRPVYIE--------------------------------------RLGQVDVNKLIKVTTIDRYLKYHVKEFEKTFAVKFPAASIAAKKQINQSTTILDVEGVGLSSFNKSARELLQSLQKIDGDNYPETLNRMFIINAGPGFRMLWGTVKSFLDPKTTAKIHVLGN--KYQSKLLEVIDADQLPEFLGGT 312          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A3B6GXK3_WHEAT (CRAL-TRIO domain-containing protein n=17 Tax=Triticinae TaxID=1648030 RepID=A0A3B6GXK3_WHEAT)

HSP 1 Score: 101 bits (252), Expect = 1.710e-19
Identity = 76/261 (29.12%), Postives = 122/261 (46.74%), Query Frame = 1
Query:  376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGR 1152
            M+R+L+A K+D  KAK    E ++WR E  V  +E     T L          V K+YP ++ G D+ GRPV++ +                                       G    N+L+KVTTL+  + YH+ E E   ++     S  A   +D+ T ILD  G+ L   + D  +++ ++ + D  +YP      ++INA   F M+WGTIK F++ +    + V G+  ++++KL + ID  ELP +LGG  R
Sbjct:  107 MLRFLKARKFDIEKAKHMWSEMLRWRNEYGVDSIE-EFDYTELN--------EVKKYYPQFYHGVDKEGRPVYVEL--------------------------------------VGKVDANKLVKVTTLDRYIKYHVKEFERSFQMRFPACSIAAKRHIDSSTTILDVQGVGLKNFSKDARELIMRLQKIDNDNYPETLCRLYIINAGQGFKMLWGTIKSFLDPQTASKIHVLGS--KYQNKLLEIIDESELPDFLGGKCR 318          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A0D2SZH8_GOSRA (CRAL-TRIO domain-containing protein n=18 Tax=Gossypium TaxID=3633 RepID=A0A0D2SZH8_GOSRA)

HSP 1 Score: 102 bits (254), Expect = 2.290e-19
Identity = 74/259 (28.57%), Postives = 118/259 (45.56%), Query Frame = 1
Query:  376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146
            M+R+LRA K+D  KAK    + ++WR E            T++     +  + V K+YP  + G D+ GRPV++                                       R G    N+L+KVTT++  + YH+ E E    +     S  A   ++  T ILD  G+ L        ++L+ + + DG +YP      F+INA P F M+WGT+K F++ +    + V GN  +++ KL + ID  +LP +LGGT
Sbjct:  102 MLRFLRARKYDLDKAKLMWADMLQWRKEFGAD--------TIMEDFDFKEYSEVVKYYPQGYHGVDKDGRPVYIE--------------------------------------RLGQVDVNKLIKVTTIDRYLKYHVKEFEKTFAVKFPAASIAAKKQINQSTTILDVEGVGLSSFNKSARELLQSLQKIDGDNYPETLNRMFIINAGPGFRMLWGTVKSFLDPKTTAKIHVLGN--KYQSKLLEVIDADQLPEFLGGT 312          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A077RYL1_WHEAT (CRAL-TRIO domain-containing protein n=54 Tax=Triticeae TaxID=147389 RepID=A0A077RYL1_WHEAT)

HSP 1 Score: 101 bits (252), Expect = 4.490e-19
Identity = 76/261 (29.12%), Postives = 122/261 (46.74%), Query Frame = 1
Query:  376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGR 1152
            M+R+L+A K+D  KAK    E ++WR E  V  +E     T L          V K+YP ++ G D+ GRPV++ +                                       G    N+L+KVTTL+  + YH+ E E   ++     S  A   +D+ T ILD  G+ L   + D  +++ ++ + D  +YP      ++INA   F M+WGTIK F++ +    + V G+  ++++KL + ID  ELP +LGG  R
Sbjct:  109 MLRFLKARKFDIEKAKHMWSEMLRWRNEYGVDNIE-EFDYTELN--------EVKKYYPQFYHGVDKEGRPVYVEL--------------------------------------VGKVDANKLVKVTTLDRYIKYHVKEFERSFQMRFPACSIAAKRHIDSSTTILDVQGVGLKNFSKDARELIMRLQKIDNDNYPETLCCLYIINAGQGFKMLWGTIKSFLDPQTASKIHVLGS--KYQNKLLEIIDESELPDFLGGKCR 320          
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A0U9HJM7_KLENI (CRAL-TRIO domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HJM7_KLENI)

HSP 1 Score: 96.3 bits (238), Expect = 1.580e-18
Identity = 80/305 (26.23%), Postives = 137/305 (44.92%), Query Frame = 1
Query:  244 GYFGSLSVRQTGSLEKLRV-LVKAGKLRMSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHI--WEMEHHHKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFMERDGVV-VEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146
            G+ G LS +Q   L+  R  L+  G LR          A   D+ ++R+LRA ++D  KA+      +K+R E +V  +  +         P++ +  V ++YPH+H   D+ GRP++                                        + G    +ELLKVTTL  ++ YH+  WE+    K     S+ A   +++   +LD  G+ L  +T      ++++A  D  +YP   G   +INAP  F  IW  +K F+++  +  +EV+G+  Q+   L K+ D   +P +LGG+
Sbjct:    3 GFLGDLSPQQQAILDVFRKSLMLKGMLR----------ARDDDITLLRFLRARQFDLEKAEAMFAAMLKFREENNVDTIRETF------AFPEKDK--VKQYYPHYHHKTDKQGRPMYFE--------------------------------------QLGVLKLDELLKVTTLERMLLYHVQEWEVLIDTKFPA-CSKKAKTSINSSLTVLDLKGVSLKHMTKTVRAFIQKLARVDQDYYPEYLGKMMIINAPTSFKAIWALVKPFLDKHTLKKIEVHGS--QFLPHLLKEADAESIPAFLGGS 248          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHE9_9STRA3.710e-4932.71CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A836CLC3_9STRA3.770e-4734.20CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
A0A7S0GY37_9EUKA5.040e-3528.84Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A843U0L8_COLES9.160e-2129.34CRAL-TRIO domain-containing protein n=1 Tax=Coloca... [more]
A0A5B8MUT4_9CHLO6.320e-2026.46CRAL-TRIO lipid binding domain-containing protein ... [more]
A0A0D2PN28_GOSRA1.020e-1928.57CRAL-TRIO domain-containing protein n=1 Tax=Gossyp... [more]
A0A3B6GXK3_WHEAT1.710e-1929.12CRAL-TRIO domain-containing protein n=17 Tax=Triti... [more]
A0A0D2SZH8_GOSRA2.290e-1928.57CRAL-TRIO domain-containing protein n=18 Tax=Gossy... [more]
A0A077RYL1_WHEAT4.490e-1929.12CRAL-TRIO domain-containing protein n=54 Tax=Triti... [more]
A0A0U9HJM7_KLENI1.580e-1826.23CRAL-TRIO domain-containing protein n=1 Tax=Klebso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_996contigC-australica_Contig_996:382..2556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT58
PFAMsCRAL_TRIO,CRAL_TRIO_N
Model size1593
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue2.81e-44
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-12_005330.1
Descriptionmacromolecule localization
Cds size1215
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_996.1.7prot_C-australica_Contig_996.1.7Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_996 890..2502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588863.5001187-UTR-C-australica_Contig_996:381..5271682588863.5001187-UTR-C-australica_Contig_996:381..527Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 382..527 +
1682588863.512403-UTR-C-australica_Contig_996:618..7491682588863.512403-UTR-C-australica_Contig_996:618..749Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 619..749 +
1682588863.5238388-UTR-C-australica_Contig_996:842..8891682588863.5238388-UTR-C-australica_Contig_996:842..889Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 843..889 +
1682588863.5829182-UTR-C-australica_Contig_996:2502..25561682588863.5829182-UTR-C-australica_Contig_996:2502..2556Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 2503..2556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588863.533966-CDS-C-australica_Contig_996:889..10141682588863.533966-CDS-C-australica_Contig_996:889..1014Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 890..1014 +
1682588863.543958-CDS-C-australica_Contig_996:1135..14361682588863.543958-CDS-C-australica_Contig_996:1135..1436Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 1136..1436 +
1682588863.5540633-CDS-C-australica_Contig_996:1547..16941682588863.5540633-CDS-C-australica_Contig_996:1547..1694Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 1548..1694 +
1682588863.5638182-CDS-C-australica_Contig_996:1778..21921682588863.5638182-CDS-C-australica_Contig_996:1778..2192Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 1779..2192 +
1682588863.5732677-CDS-C-australica_Contig_996:2274..25021682588863.5732677-CDS-C-australica_Contig_996:2274..2502Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 2275..2502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_996.1.7

>prot_C-australica_Contig_996.1.7 ID=prot_C-australica_Contig_996.1.7|Name=mRNA_C-australica_Contig_996.1.7|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=405bp
MSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRG
LELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSS
HRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLV
DYHIWEMEHHHKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKIL
RQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFMERDGVVVEVYGN
PGQWRDKLAKQIDPRELPPYLGGTGRALQDTPFMCRYYHPTGWGGEADAA
AAAEEEEGDETDSPRRLPSPNFMEAALSKFDAFTSKEFASLAEVRRIAAN
KLGGRGEKFVKLFFPDAGISPNAQLTEGSSSRGLERKASLSDKIESLFFP
PSPS*
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mRNA from alignment at C-australica_Contig_996:382..2556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_996.1.7 ID=mRNA_C-australica_Contig_996.1.7|Name=mRNA_C-australica_Contig_996.1.7|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2175bp|location=Sequence derived from alignment at C-australica_Contig_996:382..2556+ (Chrysoparadoxa australica CS_1217)
AGGAGGAGGTCTAGTGCGGAGCAAGGTGACAGCGACACGTGCGGGTGCCG TCGCCGCAGCAGTACGCCCAACCTGGGACAATTGGACAAGTCGGGCTCTC TCACTCGCCACGCCTCCTGTGCCTCCTGCTCTCTGAGTCTTGAGAGGTGA GTGCTGCTGCAAGTGAATTAATCGCTTCATCATCACTTCACATCGCTTCG GAAGTACCTGACGAAAGCTCGTGTTTGTTTTTCGCAGACGGTCCAGCAGC TTATCAGCCAGCAGCAGCACGGAGGTCTCCGACGCAGAAGCAGGGACCCA GCTATGCTACCATCCTACGTTGTCTGGGAGGAAGGGATACTTTGGGAGTC TGAGTGTAAGACAAACAGGTGGGTGTGGGGTGCATGGGCTTCCTTCTACT GCAAAAAATTCACTGCCTAACATGTTTGTATTGGTGTTGGTATTGGCATT GGTTACCGCAGGCTCTCTGGAGAAGCTGCGTGTACTGGTCAAAGCAGGGA AGCTGAGGATGTCAGTGCTTTGTGGGGAGGGCTCACACGCTGAGCCGCTG GACTTGTGTATGATTCGATACTTGAGGGCCAACAAGTGGGATGAGGTCAA AGCCAAGACGCAGTTGGAAGAGAACATCAAGTGGTAAGGACAAAAGTTGT TTGGTTTGGTTGGTTCAAACCTATCCATCCATCTATCAATGCTTGGGGCA TGGATCATATCACATATCATTTTGTTAATTTTTTGTTTACTTCCCACGCA AAAGGAGGACTGAGCGAGATGTAAGAGGGTTAGAACTGTCACACCCAGCA ACTGTGCTGGGCTGCACCCCTCAGGAGATGGAAACACTGGTTGCCAAGCA CTATCCTCACTGGCACCTGGGAGCAGATCGGCTAGGACGCCCAGTCTTCC TGTACGTGTCCTCCTCTTTGCTCTCCTCTCATCGTCTCCCTTTGACCCAA CTACCAACTAATTTAATTCTCTGCCGCTGCGGCGCTGATCCCACACACCC TGCCCCATATGTCAGCTTCCGGTATGGCTCATTCCACACCAATGAGCTTT TGAAGGTAAGTTTAGAGTTTGAAAGCCTTGCAGTGTCACCTAACGCATGC TACCCCATGGATTGATTGTTGCATCCATGACGAATAGCTCAGAAACCAAA CCAACCATACTTGCAGGTTACCACGCTCAACAATTTGGTAGACTACCACA TCTGGGAGATGGAGCACCATCATAAGCTGCTTGGGAAGTACTCAGAGGAT GCAGGGCACATTGTCGACACCTGCACCTTAATTCTGGACTTTGGCGGAAT GGAGTTGGGGCAGGTAAAGAGATGAGACCTGCCATGCCTGGAGATCAAAC AACAACTAAACTTCCCACTAACTATAGCTGACTATGCTGCCAATCAGGTC ACTGGTGATTTTATAAAAATACTTCGTCAGATGGCCGAGACGGATGGGAA GCATTACCCGGGTAGGGCAGGCTCCACGTTTGTCATCAACGCGCCACCGC TGTTCCACATGATCTGGGGCACCATTAAGGGCTTCATGGAGAGGGATGGG GTGGTCGTAGAAGTGTACGGCAACCCAGGGCAATGGAGGGACAAGCTGGC CAAGCAAATTGACCCGCGGGAGCTTCCGCCGTACCTGGGTGGTACTGGCA GGGCACTGCAGGACACACCCTTCATGTGCCGATATTATCACCCAACGGGG TGGGGTGGGGAGGCAGATGCTGCTGCTGCTGCTGAGGAAGAGGAGGGAGA TGAGACAGATTCTCCCAGACGGCTGCCTTCACCTAACTTTATGGAGGCTG CTTTGTCCAAGGTAATCAATCATCGGAAGCAAAACGCACACACACTTGCT CGCTTATCTAACTTGCTTCTTCATCCTTCCCTGCTGACCTTAGTTCGATG CGTTTACGTCCAAGGAGTTTGCTTCTCTCGCTGAAGTGCGGAGGATAGCA GCTAACAAGCTAGGGGGCAGAGGGGAGAAGTTTGTCAAGTTGTTCTTCCC TGATGCTGGCATCTCCCCCAATGCCCAGCTGACGGAGGGGAGCTCCAGCC GTGGCCTTGAGAGGAAGGCAAGCTTGTCAGACAAGATAGAAAGCCTTTTC TTCCCGCCTTCGCCCAGCTGACGGAGGGGAGCTCCAGCCGTGGCCTTGAG AGGAAGGCAAGCTTGTCAGACAAGA
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Coding sequence (CDS) from alignment at C-australica_Contig_996:382..2556+

>mRNA_C-australica_Contig_996.1.7 ID=mRNA_C-australica_Contig_996.1.7|Name=mRNA_C-australica_Contig_996.1.7|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1215bp|location=Sequence derived from alignment at C-australica_Contig_996:382..2556+ (Chrysoparadoxa australica CS_1217)
ATGTCAGTGCTTTGTGGGGAGGGCTCACACGCTGAGCCGCTGGACTTGTG
TATGATTCGATACTTGAGGGCCAACAAGTGGGATGAGGTCAAAGCCAAGA
CGCAGTTGGAAGAGAACATCAAGTGGAGGACTGAGCGAGATGTAAGAGGG
TTAGAACTGTCACACCCAGCAACTGTGCTGGGCTGCACCCCTCAGGAGAT
GGAAACACTGGTTGCCAAGCACTATCCTCACTGGCACCTGGGAGCAGATC
GGCTAGGACGCCCAGTCTTCCTGTACGTGTCCTCCTCTTTGCTCTCCTCT
CATCGTCTCCCTTTGACCCAACTACCAACTAATTTAATTCTCTGCCGCTG
CGGCGCTGATCCCACACACCCTGCCCCATATGTCAGCTTCCGGTATGGCT
CATTCCACACCAATGAGCTTTTGAAGGTTACCACGCTCAACAATTTGGTA
GACTACCACATCTGGGAGATGGAGCACCATCATAAGCTGCTTGGGAAGTA
CTCAGAGGATGCAGGGCACATTGTCGACACCTGCACCTTAATTCTGGACT
TTGGCGGAATGGAGTTGGGGCAGGTCACTGGTGATTTTATAAAAATACTT
CGTCAGATGGCCGAGACGGATGGGAAGCATTACCCGGGTAGGGCAGGCTC
CACGTTTGTCATCAACGCGCCACCGCTGTTCCACATGATCTGGGGCACCA
TTAAGGGCTTCATGGAGAGGGATGGGGTGGTCGTAGAAGTGTACGGCAAC
CCAGGGCAATGGAGGGACAAGCTGGCCAAGCAAATTGACCCGCGGGAGCT
TCCGCCGTACCTGGGTGGTACTGGCAGGGCACTGCAGGACACACCCTTCA
TGTGCCGATATTATCACCCAACGGGGTGGGGTGGGGAGGCAGATGCTGCT
GCTGCTGCTGAGGAAGAGGAGGGAGATGAGACAGATTCTCCCAGACGGCT
GCCTTCACCTAACTTTATGGAGGCTGCTTTGTCCAAGTTCGATGCGTTTA
CGTCCAAGGAGTTTGCTTCTCTCGCTGAAGTGCGGAGGATAGCAGCTAAC
AAGCTAGGGGGCAGAGGGGAGAAGTTTGTCAAGTTGTTCTTCCCTGATGC
TGGCATCTCCCCCAATGCCCAGCTGACGGAGGGGAGCTCCAGCCGTGGCC
TTGAGAGGAAGGCAAGCTTGTCAGACAAGATAGAAAGCCTTTTCTTCCCG
CCTTCGCCCAGCTGA
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