mRNA_C-australica_Contig_996.1.7 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A835ZHE9_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE9_9STRA) HSP 1 Score: 181 bits (458), Expect = 3.710e-49 Identity = 105/321 (32.71%), Postives = 154/321 (47.98%), Query Frame = 1 Query: 211 LCY-HPTLSGRKGYFGSLSVRQTGSLEKLRVLVKAGKLR-------MSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKLLGKYSED--------------------AGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFMERDGVVVEVYGNPGQWR 1089 +C+ H + G KGY G+L+ QT +L LR V G+ + +++ C +E LD C++RYLRA+ +D + L EN+ WR + L PA VLG E+ L+A YPHW LG DR GRPV LY RYG+F LL+ TT L YH+WE E + +LL + + +G +D +LILD G+ +GQ+T + + +LR +AETD +HYP R +T+V+N PPLF +IWG I+G +E + V + +W+ Sbjct: 1 MCHPHSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLY--------------------------------------RYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEGSSADLRVLSDRKRWQ 283
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A836CLC3_9STRA (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC3_9STRA) HSP 1 Score: 175 bits (444), Expect = 3.770e-47 Identity = 105/307 (34.20%), Postives = 160/307 (52.12%), Query Frame = 1 Query: 241 KGYFGSLSVRQTGSLEKLRVLVKAGKLRMSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGRAL 1158 +G+ G LS Q G+L +L LV++ L ++++ G AEPL LC++R+LRAN ++ KA QLEEN+ +R +V L + VLGC P+ + +++PHW G DR+GRPV LC+ +YG F +ELL +TT+ ++V H+WE E +L+ + S G IVD+ +I+D GGM + QVT DFI +++++A D YP G F+IN P LF +W ++ R ++++ P W+ L + I LPP GGTG L Sbjct: 32 EGFHGQLSEPQEGALRELYGLVESLNLDLTLV--RGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAIN----RYFPHWDFGEDRVGRPV------------------------LCK--------------QYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 294
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A7S0GY37_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GY37_9EUKA) HSP 1 Score: 144 bits (362), Expect = 5.040e-35 Identity = 92/319 (28.84%), Postives = 152/319 (47.65%), Query Frame = 1 Query: 217 YHPTLSGRKGYFGSLSVRQTGSLEKLRVLVKAGKLRMSVLCGE-GSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGRALQDT 1167 YH L+ + GY L+ +Q +L+ +++ + K+ VL G AE DL ++R+LRA ++ KA L ++I WR ++DV+ L+ VLGC P+ M T H P WH G D+ GRPV + +G+F E+ K T+L L+D+H+W+ME + L + S+ HIV+T T+++D L T + K L ++++ D H+P R G V+NAP L + W I+G+++ + V++ P ++ L I L GG ++L+ T Sbjct: 56 YHKDLNHKDGYLNCLTDKQKQALKDIKIKITEEKI---VLEGYFDPEAETQDLILLRFLRARNFEVKKAYKLLSDDIAWRKDKDVKSLKKKTEREVLGCDPKLMHT----HLPVWHQGCDKQGRPVIYKI--------------------------------------FGNFQIWEVTKHTSLEKLIDHHLWQMESYMDLTRENSKKFRHIVETVTVVVDAKDWRLSLFTKEATKFLYRISKVDSDHFPERMGRLIVVNAPYLLSVAWKVIRGWLDPKTQKKVQIVRGPNEYEPILKDWISESSLCDEYGGKAKSLRVT 329
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A843U0L8_COLES (CRAL-TRIO domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U0L8_COLES) HSP 1 Score: 106 bits (265), Expect = 9.160e-21 Identity = 76/259 (29.34%), Postives = 116/259 (44.79%), Query Frame = 1 Query: 376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146 M+R+LRA K+D KAK + ++WR E T+L + V +HYPH H G D+ GRP++ R G N+LL+VTT++ + YH+ E E + S A +D T ILD G+ L ++L ++ + DG +YP F+INA P F M+W T+K F++ + + V GN +++ KL + ID ELP +LGG+ Sbjct: 103 MLRFLRARKFDNEKAKQMWSDMLQWRKEFGAD--------TILDDFEFKEVEEVLEHYPHGHHGVDKEGRPIYFE--------------------------------------RLGKIDCNKLLQVTTMDRYLKYHVREFERLFAVKFPACSVAAKRHIDQSTTILDVQGVGLKNFNKSARELLTRLQKIDGDNYPESLCRMFIINAGPGFRMLWSTVKSFLDPKTTAKIHVLGN--KYQSKLLEVIDASELPDFLGGS 313
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A5B8MUT4_9CHLO (CRAL-TRIO lipid binding domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MUT4_9CHLO) HSP 1 Score: 101 bits (252), Expect = 6.320e-20 Identity = 68/257 (26.46%), Postives = 117/257 (45.53%), Query Frame = 1 Query: 382 RYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGA-DRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHH-HKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFMERDGVV-VEVYGNPGQWRDKLAKQIDPRELPPYLGG 1143 R+L+A +WDE KA + ++WR E G + H P++ E L K +P ++L D+ GRP+++ G + LL+VTT+ ++ YH++E E ++ K S GH + I+D G+ Q L+Q+ D ++YP G F+INAP +F MIW +K ++++ + ++VYG+ + +KL +DP +LP ++GG Sbjct: 68 RFLKARQWDEEKAIDMYKNTVRWRREF---GTDQIHKTFSF---PEKKEVL--KIFPQYYLRTQDKFGRPIYIN--------------------------------------EVGKINVEALLRVTTVERMIQYHVYEWEKLIREIYPKCSAHVGHKIFQSFSIIDLKGLSYKQFNKTTRSFLKQITNIDQEYYPEHLGQMFIINAPKIFSMIWSVVKLWLDKRTLAKIKVYGS--DYHEKLFNFVDPHDLPEHIGG 276
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A0D2PN28_GOSRA (CRAL-TRIO domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2PN28_GOSRA) HSP 1 Score: 102 bits (254), Expect = 1.020e-19 Identity = 74/259 (28.57%), Postives = 118/259 (45.56%), Query Frame = 1 Query: 376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146 M+R+LRA K+D KAK + ++WR E T++ + + V K+YP + G D+ GRPV++ R G N+L+KVTT++ + YH+ E E + S A ++ T ILD G+ L ++L+ + + DG +YP F+INA P F M+WGT+K F++ + + V GN +++ KL + ID +LP +LGGT Sbjct: 102 MLRFLRARKYDLDKAKLMWADMLQWRKEFGAD--------TIMEDFDFKEYSEVVKYYPQGYHGVDKDGRPVYIE--------------------------------------RLGQVDVNKLIKVTTIDRYLKYHVKEFEKTFAVKFPAASIAAKKQINQSTTILDVEGVGLSSFNKSARELLQSLQKIDGDNYPETLNRMFIINAGPGFRMLWGTVKSFLDPKTTAKIHVLGN--KYQSKLLEVIDADQLPEFLGGT 312
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A3B6GXK3_WHEAT (CRAL-TRIO domain-containing protein n=17 Tax=Triticinae TaxID=1648030 RepID=A0A3B6GXK3_WHEAT) HSP 1 Score: 101 bits (252), Expect = 1.710e-19 Identity = 76/261 (29.12%), Postives = 122/261 (46.74%), Query Frame = 1 Query: 376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGR 1152 M+R+L+A K+D KAK E ++WR E V +E T L V K+YP ++ G D+ GRPV++ + G N+L+KVTTL+ + YH+ E E ++ S A +D+ T ILD G+ L + D +++ ++ + D +YP ++INA F M+WGTIK F++ + + V G+ ++++KL + ID ELP +LGG R Sbjct: 107 MLRFLKARKFDIEKAKHMWSEMLRWRNEYGVDSIE-EFDYTELN--------EVKKYYPQFYHGVDKEGRPVYVEL--------------------------------------VGKVDANKLVKVTTLDRYIKYHVKEFERSFQMRFPACSIAAKRHIDSSTTILDVQGVGLKNFSKDARELIMRLQKIDNDNYPETLCRLYIINAGQGFKMLWGTIKSFLDPQTASKIHVLGS--KYQNKLLEIIDESELPDFLGGKCR 318
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A0D2SZH8_GOSRA (CRAL-TRIO domain-containing protein n=18 Tax=Gossypium TaxID=3633 RepID=A0A0D2SZH8_GOSRA) HSP 1 Score: 102 bits (254), Expect = 2.290e-19 Identity = 74/259 (28.57%), Postives = 118/259 (45.56%), Query Frame = 1 Query: 376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146 M+R+LRA K+D KAK + ++WR E T++ + + V K+YP + G D+ GRPV++ R G N+L+KVTT++ + YH+ E E + S A ++ T ILD G+ L ++L+ + + DG +YP F+INA P F M+WGT+K F++ + + V GN +++ KL + ID +LP +LGGT Sbjct: 102 MLRFLRARKYDLDKAKLMWADMLQWRKEFGAD--------TIMEDFDFKEYSEVVKYYPQGYHGVDKDGRPVYIE--------------------------------------RLGQVDVNKLIKVTTIDRYLKYHVKEFEKTFAVKFPAASIAAKKQINQSTTILDVEGVGLSSFNKSARELLQSLQKIDGDNYPETLNRMFIINAGPGFRMLWGTVKSFLDPKTTAKIHVLGN--KYQSKLLEVIDADQLPEFLGGT 312
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A077RYL1_WHEAT (CRAL-TRIO domain-containing protein n=54 Tax=Triticeae TaxID=147389 RepID=A0A077RYL1_WHEAT) HSP 1 Score: 101 bits (252), Expect = 4.490e-19 Identity = 76/261 (29.12%), Postives = 122/261 (46.74%), Query Frame = 1 Query: 376 MIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHIWEMEHHHKL-LGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFME-RDGVVVEVYGNPGQWRDKLAKQIDPRELPPYLGGTGR 1152 M+R+L+A K+D KAK E ++WR E V +E T L V K+YP ++ G D+ GRPV++ + G N+L+KVTTL+ + YH+ E E ++ S A +D+ T ILD G+ L + D +++ ++ + D +YP ++INA F M+WGTIK F++ + + V G+ ++++KL + ID ELP +LGG R Sbjct: 109 MLRFLKARKFDIEKAKHMWSEMLRWRNEYGVDNIE-EFDYTELN--------EVKKYYPQFYHGVDKEGRPVYVEL--------------------------------------VGKVDANKLVKVTTLDRYIKYHVKEFERSFQMRFPACSIAAKRHIDSSTTILDVQGVGLKNFSKDARELIMRLQKIDNDNYPETLCCLYIINAGQGFKMLWGTIKSFLDPQTASKIHVLGS--KYQNKLLEIIDESELPDFLGGKCR 320
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Match: A0A0U9HJM7_KLENI (CRAL-TRIO domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HJM7_KLENI) HSP 1 Score: 96.3 bits (238), Expect = 1.580e-18 Identity = 80/305 (26.23%), Postives = 137/305 (44.92%), Query Frame = 1 Query: 244 GYFGSLSVRQTGSLEKLRV-LVKAGKLRMSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGLELSHPATVLGCTPQEMETLVAKHYPHWHLGADRLGRPVFLYVSSSLLSSHRLPLTQLPTNLILCRCGADPTHPAPYVSFRYGSFHTNELLKVTTLNNLVDYHI--WEMEHHHKLLGKYSEDAGHIVDTCTLILDFGGMELGQVTGDFIKILRQMAETDGKHYPGRAGSTFVINAPPLFHMIWGTIKGFMERDGVV-VEVYGNPGQWRDKLAKQIDPRELPPYLGGT 1146 G+ G LS +Q L+ R L+ G LR A D+ ++R+LRA ++D KA+ +K+R E +V + + P++ + V ++YPH+H D+ GRP++ + G +ELLKVTTL ++ YH+ WE+ K S+ A +++ +LD G+ L +T ++++A D +YP G +INAP F IW +K F+++ + +EV+G+ Q+ L K+ D +P +LGG+ Sbjct: 3 GFLGDLSPQQQAILDVFRKSLMLKGMLR----------ARDDDITLLRFLRARQFDLEKAEAMFAAMLKFREENNVDTIRETF------AFPEKDK--VKQYYPHYHHKTDKQGRPMYFE--------------------------------------QLGVLKLDELLKVTTLERMLLYHVQEWEVLIDTKFPA-CSKKAKTSINSSLTVLDLKGVSLKHMTKTVRAFIQKLARVDQDYYPEYLGKMMIINAPTSFKAIWALVKPFLDKHTLKKIEVHGS--QFLPHLLKEADAESIPAFLGGS 248 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_996.1.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_996.1.7 >prot_C-australica_Contig_996.1.7 ID=prot_C-australica_Contig_996.1.7|Name=mRNA_C-australica_Contig_996.1.7|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=405bp MSVLCGEGSHAEPLDLCMIRYLRANKWDEVKAKTQLEENIKWRTERDVRGback to top mRNA from alignment at C-australica_Contig_996:382..2556+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_996.1.7 ID=mRNA_C-australica_Contig_996.1.7|Name=mRNA_C-australica_Contig_996.1.7|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2175bp|location=Sequence derived from alignment at C-australica_Contig_996:382..2556+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_996:382..2556+ >mRNA_C-australica_Contig_996.1.7 ID=mRNA_C-australica_Contig_996.1.7|Name=mRNA_C-australica_Contig_996.1.7|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1215bp|location=Sequence derived from alignment at C-australica_Contig_996:382..2556+ (Chrysoparadoxa australica CS_1217)back to top |