mRNA_C-australica_Contig_9942.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9942.2.1
Unique NamemRNA_C-australica_Contig_9942.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A3D5S5U7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5S5U7_9BACT)

HSP 1 Score: 189 bits (481), Expect = 4.380e-56
Identity = 89/117 (76.07%), Postives = 101/117 (86.32%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSIAF 351
            YGSL G IL KVQ+GGSLM+PD IS+E PA VR+NAD++RL DKVS+HASYIKGNL+TL+D F FDE SLAK+RFIYHMNKFLA G+DYYWAF P  DG YKA +YISPYFGLSIAF
Sbjct:  354 YGSLTGQILQKVQIGGSLMLPDNISDETPATVRVNADIDRLGDKVSMHASYIKGNLSTLQDTFTFDERSLAKVRFIYHMNKFLAAGIDYYWAFTPTADGGYKAEKYISPYFGLSIAF 470
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A5E7XQM2_9BACT (Uncharacterized protein n=1 Tax=Imperialibacter sp. EC-SDR9 TaxID=2038371 RepID=A0A5E7XQM2_9BACT)

HSP 1 Score: 189 bits (480), Expect = 4.540e-55
Identity = 87/117 (74.36%), Postives = 103/117 (88.03%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSIAF 351
            YGSL GHIL KVQLGGS+++PD++SE APAVVRLNAD++RL DKVS+H SY+KGNL+TLKDAF  DE SL K+RFIYH+N+FLA G+DYYWAFAP  DGSYKAT+Y SPYFG+SI F
Sbjct:  459 YGSLTGHILQKVQLGGSILLPDDVSETAPAVVRLNADVDRLGDKVSIHGSYVKGNLSTLKDAFKLDERSLVKVRFIYHLNRFLAAGVDYYWAFAPTADGSYKATQYFSPYFGVSIKF 575
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A2D6AQG2_9BACT (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2D6AQG2_9BACT)

HSP 1 Score: 189 bits (481), Expect = 5.860e-55
Identity = 89/117 (76.07%), Postives = 101/117 (86.32%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSIAF 351
            YGSL G IL KVQ+GGSLM+PD IS+E PA VR+NAD++RL DKVS+HASYIKGNL+TL+D F FDE SLAK+RFIYHMNKFLA G+DYYWAF P  DG YKA +YISPYFGLSIAF
Sbjct:  496 YGSLTGQILQKVQIGGSLMLPDNISDETPATVRVNADIDRLGDKVSMHASYIKGNLSTLQDTFTFDERSLAKVRFIYHMNKFLAAGIDYYWAFTPTADGGYKAEKYISPYFGLSIAF 612
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A3D9KZQ5_MARFU (Uncharacterized protein n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9KZQ5_MARFU)

HSP 1 Score: 184 bits (467), Expect = 5.230e-53
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSIAF 351
            YGSL GHIL KV+LGG+LM+PDEIS+E PA VR+NADL+RLADK S H SYIKGNL+TL +AF FDE SLAK+R IYH+NKFLA G+DYYWAF P  DGSYK T+Y+SPYFGLSI F
Sbjct:  483 YGSLTGHILHKVRLGGALMLPDEISDENPATVRVNADLDRLADKFSFHGSYIKGNLSTLDEAFTFDERSLAKLRVIYHLNKFLAAGLDYYWAFTPTADGSYKPTKYVSPYFGLSIDF 599
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A654DYT3_9BACT (Uncharacterized protein n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654DYT3_9BACT)

HSP 1 Score: 177 bits (450), Expect = 1.430e-50
Identity = 83/117 (70.94%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSIAF 351
            YGSL GHIL KVQLGGSLMIPD+++E  PA VR+NADL+RLADK S H SYIKGNL  L D F FDE SLAK+R IYH+NKFLA G DYYWAF P  DG YK T+Y+SPYFG+S+ F
Sbjct:  478 YGSLTGHILKKVQLGGSLMIPDDVTEATPATVRVNADLDRLADKFSFHGSYIKGNLTDLGDTFKFDERSLAKLRVIYHLNKFLAAGFDYYWAFTPTADGGYKPTKYVSPYFGVSVQF 594
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A239H681_9BACT (Uncharacterized protein n=1 Tax=Ekhidna lutea TaxID=447679 RepID=A0A239H681_9BACT)

HSP 1 Score: 164 bits (415), Expect = 9.580e-46
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSIA 348
            YGSL+GH+L KV LGGSLMIPD+IS  +PA V L AD+ERLADK S H +Y+KG+L  L DAF  DE SLAK+RFIYHMNKFLA G+DYYW F P  +G ++AT+Y+ PYFG+SI+
Sbjct:  438 YGSLRGHVLKKVSLGGSLMIPDDISASSPAFVELTADMERLADKFSFHGNYVKGDLDDLGDAFKLDERSLAKMRFIYHMNKFLATGVDYYWLFTPTAEGGFEATKYVMPYFGVSIS 553
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: UPI000D6E3FB8 (hypothetical protein n=1 Tax=Reichenbachiella versicolor TaxID=1821036 RepID=UPI000D6E3FB8)

HSP 1 Score: 162 bits (411), Expect = 3.950e-45
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSI 345
            YGSL GHIL  V LGGSLM+PD+ISE +PA V L+AD++RLA+K S+HA+Y KG L  L DAF  D+NSLAK+RF YHMNKF+ +G+DY+W F P DDG YKATRY+SP+FG+SI
Sbjct:  445 YGSLTGHILKIVSLGGSLMLPDDISESSPATVTLHADVDRLANKFSIHANYFKGGLTDLNDAFKLDDNSLAKVRFAYHMNKFMVMGVDYFWTFTPTDDG-YKATRYVSPFFGVSI 558
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A1W2G5P5_9BACT (Uncharacterized protein n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2G5P5_9BACT)

HSP 1 Score: 155 bits (393), Expect = 1.800e-42
Identity = 75/115 (65.22%), Postives = 92/115 (80.00%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSI 345
            YGSL+GHIL K+ LGGSLMIPDEISE APAVV LNAD++RL +K S+HA Y KG L  L DAF  DE SLAK+RF+YH+NKFL  G+DY+++F   + G YK T+Y+SPYFG+SI
Sbjct:  457 YGSLKGHILKKLTLGGSLMIPDEISETAPAVVTLNADVDRLFNKFSMHARYYKGGLTDLGDAFSLDERSLAKVRFVYHLNKFLVTGVDYFYSFTATESG-YKTTKYVSPYFGVSI 570
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A1M6JEY7_9BACT (Uncharacterized protein n=3 Tax=Reichenbachiella TaxID=156993 RepID=A0A1M6JEY7_9BACT)

HSP 1 Score: 155 bits (393), Expect = 2.410e-42
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSIAF 351
            YGS+ GHIL KV +GGSL++PD I E APAVV L AD++RL DKVS+HA Y KG L  L DAF  DE SLAK+RF+YH+N+F+  G+DY++ F P ++G Y+ T+YISPYFGLSI F
Sbjct:  483 YGSITGHILQKVNIGGSLLLPDHIGEAAPAVVTLTADVDRLFDKVSIHAKYFKGGLTELNDAFTLDERSLAKVRFVYHLNRFIVAGVDYFYTFTPTENG-YETTQYISPYFGLSIQF 598
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BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Match: A0A2E9G4G7_9RHOB (Uncharacterized protein n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9G4G7_9RHOB)

HSP 1 Score: 127 bits (318), Expect = 4.970e-32
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:    1 YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHASYIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGSYKATRYISPYFGLSI 345
            YG L   +L KV++ GSL++PD +SEE PA+++LNA+L  + DK+SL A+YIK NL  L+D  + D+ SLA++R  Y +NKFL VG DY W +A  +DGS+KA  Y  PYFG S+
Sbjct:  383 YGVLSATLLDKVRVSGSLLMPDVVSEETPALMQLNAELINMFDKLSLKATYIKSNLVDLEDVIMLDDRSLARMRMSYQLNKFLVVGADYQWTYALQEDGSFKADHYFMPYFGFSL 497
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9942.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A3D5S5U7_9BACT4.380e-5676.07Uncharacterized protein (Fragment) n=1 Tax=Cytopha... [more]
A0A5E7XQM2_9BACT4.540e-5574.36Uncharacterized protein n=1 Tax=Imperialibacter sp... [more]
A0A2D6AQG2_9BACT5.860e-5576.07Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A3D9KZQ5_MARFU5.230e-5374.36Uncharacterized protein n=1 Tax=Marinoscillum furv... [more]
A0A654DYT3_9BACT1.430e-5070.94Uncharacterized protein n=1 Tax=Marinoscillum sp. ... [more]
A0A239H681_9BACT9.580e-4665.52Uncharacterized protein n=1 Tax=Ekhidna lutea TaxI... [more]
UPI000D6E3FB83.950e-4566.09hypothetical protein n=1 Tax=Reichenbachiella vers... [more]
A0A1W2G5P5_9BACT1.800e-4265.22Uncharacterized protein n=1 Tax=Reichenbachiella f... [more]
A0A1M6JEY7_9BACT2.410e-4261.54Uncharacterized protein n=3 Tax=Reichenbachiella T... [more]
A0A2E9G4G7_9RHOB4.970e-3251.30Uncharacterized protein n=1 Tax=Thalassobius sp. T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9942contigC-australica_Contig_9942:496..849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121904.ARBP01000028_gene1634
Model size354
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.42e-32
EggNOG OGsCOG4254@1|root,COG4254@2|Bacteria,4NJDX@976|Bacteroidetes,47TI3@768503|Cytophagia
DescriptionPFAM FecR protein
Cds size354
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588862.6059136-CDS-C-australica_Contig_9942:495..8491682588862.6059136-CDS-C-australica_Contig_9942:495..849Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9942 496..849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9942.2.1prot_C-australica_Contig_9942.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9942 496..849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9942.2.1

>prot_C-australica_Contig_9942.2.1 ID=prot_C-australica_Contig_9942.2.1|Name=mRNA_C-australica_Contig_9942.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=118bp
YGSLQGHILPKVQLGGSLMIPDEISEEAPAVVRLNADLERLADKVSLHAS
YIKGNLATLKDAFIFDENSLAKIRFIYHMNKFLAVGMDYYWAFAPADDGS
YKATRYISPYFGLSIAF*
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mRNA from alignment at C-australica_Contig_9942:496..849-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9942.2.1 ID=mRNA_C-australica_Contig_9942.2.1|Name=mRNA_C-australica_Contig_9942.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=354bp|location=Sequence derived from alignment at C-australica_Contig_9942:496..849- (Chrysoparadoxa australica CS_1217)
TACGGAAGCCTTCAGGGACACATCCTGCCTAAAGTCCAATTAGGTGGAAG
CTTGATGATACCTGATGAGATTTCTGAAGAAGCACCAGCCGTAGTCCGAC
TAAATGCAGATTTGGAGCGATTGGCAGATAAAGTATCATTGCATGCCAGT
TATATTAAAGGAAATCTGGCTACACTCAAGGATGCATTCATATTTGATGA
AAACTCACTGGCAAAGATTAGGTTCATCTACCACATGAATAAGTTCCTGG
CAGTAGGTATGGATTACTACTGGGCTTTTGCACCTGCCGATGACGGATCT
TATAAGGCAACCCGATATATATCTCCATATTTTGGTTTATCTATCGCATT
TTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_9942:496..849-

>mRNA_C-australica_Contig_9942.2.1 ID=mRNA_C-australica_Contig_9942.2.1|Name=mRNA_C-australica_Contig_9942.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=354bp|location=Sequence derived from alignment at C-australica_Contig_9942:496..849- (Chrysoparadoxa australica CS_1217)
TACGGAAGCCTTCAGGGACACATCCTGCCTAAAGTCCAATTAGGTGGAAG
CTTGATGATACCTGATGAGATTTCTGAAGAAGCACCAGCCGTAGTCCGAC
TAAATGCAGATTTGGAGCGATTGGCAGATAAAGTATCATTGCATGCCAGT
TATATTAAAGGAAATCTGGCTACACTCAAGGATGCATTCATATTTGATGA
AAACTCACTGGCAAAGATTAGGTTCATCTACCACATGAATAAGTTCCTGG
CAGTAGGTATGGATTACTACTGGGCTTTTGCACCTGCCGATGACGGATCT
TATAAGGCAACCCGATATATATCTCCATATTTTGGTTTATCTATCGCATT
TTAA
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