mRNA_C-australica_Contig_9922.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9922.1.1
Unique NamemRNA_C-australica_Contig_9922.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9922.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9922contigC-australica_Contig_9922:616..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588860.7282166-CDS-C-australica_Contig_9922:615..8491682588860.7282166-CDS-C-australica_Contig_9922:615..849Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9922 616..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9922.1.1prot_C-australica_Contig_9922.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9922 616..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9922.1.1

>prot_C-australica_Contig_9922.1.1 ID=prot_C-australica_Contig_9922.1.1|Name=mRNA_C-australica_Contig_9922.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=78bp
LNRRFQDHPAIDVADLTIRKGDGSVSMVLSVQSFRGLREQWLEDVFRTLT
PHSKINIALIEDTQDGDLQPRTFFVDLW
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mRNA from alignment at C-australica_Contig_9922:616..849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9922.1.1 ID=mRNA_C-australica_Contig_9922.1.1|Name=mRNA_C-australica_Contig_9922.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=234bp|location=Sequence derived from alignment at C-australica_Contig_9922:616..849+ (Chrysoparadoxa australica CS_1217)
TTAAACCGTAGGTTTCAAGACCACCCCGCTATTGACGTCGCAGACCTTAC
AATTCGGAAGGGTGATGGTTCGGTGTCGATGGTTCTCTCTGTCCAATCAT
TCAGGGGGTTACGCGAGCAGTGGCTGGAAGATGTGTTTCGGACTTTAACT
CCGCATTCAAAGATAAACATAGCCTTAATTGAGGACACTCAAGACGGTGA
CCTCCAACCACGCACATTTTTCGTCGATTTATGG
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Coding sequence (CDS) from alignment at C-australica_Contig_9922:616..849+

>mRNA_C-australica_Contig_9922.1.1 ID=mRNA_C-australica_Contig_9922.1.1|Name=mRNA_C-australica_Contig_9922.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=234bp|location=Sequence derived from alignment at C-australica_Contig_9922:616..849+ (Chrysoparadoxa australica CS_1217)
TTAAACCGTAGGTTTCAAGACCACCCCGCTATTGACGTCGCAGACCTTAC
AATTCGGAAGGGTGATGGTTCGGTGTCGATGGTTCTCTCTGTCCAATCAT
TCAGGGGGTTACGCGAGCAGTGGCTGGAAGATGTGTTTCGGACTTTAACT
CCGCATTCAAAGATAAACATAGCCTTAATTGAGGACACTCAAGACGGTGA
CCTCCAACCACGCACATTTTTCGTCGATTTATGG
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