mRNA_C-australica_Contig_992.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_992.7.1
Unique NamemRNA_C-australica_Contig_992.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_992.7.1 vs. uniprot
Match: A0A2D4BS22_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS22_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 4.500e-8
Identity = 61/203 (30.05%), Postives = 107/203 (52.71%), Query Frame = 1 
Query: 1066 DGEVMQQNNNALLAVVRDEVALRERAQQQMRELEQDLLEALAACELSRDGARLEAAELKAKLRLLEAERADAHVFDVYEGDIQRLVSEVEALRGRNLAAEMRLLAMSLPPNSSSPAALSHLETSSVVFRPHHPEASLSAVKEVRRRLRESEMELTRVKQENEAFRRQQRRFMAQERLLEEHSSQSALLGRRLLDADQELRVTR 1674
            D  ++++N +ALL +V+++  LRE A+ +  +  +D  E  A  EL  +  +LEAA L+ KLR LE +   A VF+ YE D++ L  EV+ LR  N+  E+RL A     +SS       +   S      H      ++ E++RR +    E   ++Q+   +R+++R+F+AQ +L+ + + +   L R L   ++ L   R
Sbjct: 1050 DAALLRRNYDALLTIVQEQQRLREAAESRAADAVRDHEELRAQHELQIENLKLEAANLRRKLRALERQSPAATVFEHYEQDVESLHREVQQLRALNVQLELRL-AGGASESSSDAVVFGGVSGGSGSGSGVHX-----SLAELKRRYQAMAEERQALEQQLVEYRKRERQFLAQSKLVRDSTRKVDRLARELSAKEETLLAAR 1246
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BLAST of mRNA_C-australica_Contig_992.7.1 vs. uniprot
Match: A0A8K1C5R2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5R2_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 9.400e-8
Identity = 61/211 (28.91%), Postives = 104/211 (49.29%), Query Frame = 1 
Query: 1066 DGEVMQQNNNALLAVVRDEVALRERAQQQMRELEQDLLEALAACELSRDGARLEAAELKAKLRLLEAERADAHVFDVYEGDIQRLVSEVEALRGRNLAAEMRLLAMS--------LPPNSSSPAALSHLETSSVVFRPHHPEASLSAVKEVRRRLRESEMELTRVKQENEAFRRQQRRFMAQERLLEEHSSQSALLGRRLLDADQELRVTR 1674
            D  ++++N +ALL VVR++   RE A+ +  +   +  E  A  EL  +  +L++  LK+K+R LE +   A VFD YE +I RL  E + LR +N+  E+RL ++         + P    P +L+ L+                A+ E R +L    +E          +R+++R+F AQ RL+ E + ++  L R L + +  L  TR
Sbjct:  666 DAALLRKNYDALLTVVREQQQHRESAETRAADAIHECEELRAQYELQIENLKLDSVALKSKVRTLEKQSGCAQVFDQYEHEISRLHVEAQQLRTQNVQLELRLASVDGNNNNAAFMTPGLGGPGSLTELKK------------RYQAMAEDREQLERQLLE----------YRKKERQFYAQSRLVNESTRKADRLARELSEKEDALASTR 854
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_992.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D4BS22_PYTIN4.500e-830.05Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1C5R2_PYTOL9.400e-828.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_992contigC-australica_Contig_992:11413..14766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog115417.EPrPW00000016495
Model size1676
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons7
Evalue3.71e-08
EggNOG OGs2CYVQ@1|root,2S6RR@2759|Eukaryota,1MD6I@121069|Pythiales
DescriptionSource PGD
Cds size1674
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_992.7.1prot_C-australica_Contig_992.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_992 11413..14765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588860.0428162-CDS-C-australica_Contig_992:11412..114451682588860.0428162-CDS-C-australica_Contig_992:11412..11445Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 11413..11445 +
1682588860.056371-CDS-C-australica_Contig_992:11626..118121682588860.056371-CDS-C-australica_Contig_992:11626..11812Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 11627..11812 +
1682588860.0655854-CDS-C-australica_Contig_992:12123..128761682588860.0655854-CDS-C-australica_Contig_992:12123..12876Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 12124..12876 +
1682588860.0734048-CDS-C-australica_Contig_992:13218..134281682588860.0734048-CDS-C-australica_Contig_992:13218..13428Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 13219..13428 +
1682588860.0832596-CDS-C-australica_Contig_992:13767..139101682588860.0832596-CDS-C-australica_Contig_992:13767..13910Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 13768..13910 +
1682588860.0922174-CDS-C-australica_Contig_992:14169..142571682588860.0922174-CDS-C-australica_Contig_992:14169..14257Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 14170..14257 +
1682588860.1037505-CDS-C-australica_Contig_992:14504..147651682588860.1037505-CDS-C-australica_Contig_992:14504..14765Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 14505..14765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_992.7.1

>prot_C-australica_Contig_992.7.1 ID=prot_C-australica_Contig_992.7.1|Name=mRNA_C-australica_Contig_992.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=558bp
VLHSSVGGRLTTLHVVRLNVSPGSTYSPRLLEGFIRADALLQDPAEERLR
DILMPLLDGNNRTWVVGEVGTAEDSFPEDLGTLRCLQSMHGRESRCHPTT
GVSLEQLEMLQPGAVAGLEGVSQAKQQQVDEKSPGDKGEVKTEAEADFDV
FNALASVVGRARATSAEAQLENLRLAVSERQQEVVPEKDALTHTEEVCAT
ATSTSTATATASAGGGSEKKIIRDIKSEIEAVMSSFLADRDEPDESEQQE
ALAHPAKQPGQVTIEPTAGAALDSPPEQKQQQPSLPPAPALSSEVTADVP
SPMSPMPMPSMSTPVPVPMPMLHKVSAKTLGPSPSSLGLVAGCSPTSAHT
ATTLTDGEVMQQNNNALLAVVRDEVALRERAQQQMRELEQDLLEALAACE
LSRDGARLEAAELKAKLRLLEAERADAHVFDVYEGDIQRLVSEVEALRGR
NLAAEMRLLAMSLPPNSSSPAALSHLETSSVVFRPHHPEASLSAVKEVRR
RLRESEMELTRVKQENEAFRRQQRRFMAQERLLEEHSSQSALLGRRLLDA
DQELRVTR
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mRNA from alignment at C-australica_Contig_992:11413..14766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_992.7.1 ID=mRNA_C-australica_Contig_992.7.1|Name=mRNA_C-australica_Contig_992.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3354bp|location=Sequence derived from alignment at C-australica_Contig_992:11413..14766+ (Chrysoparadoxa australica CS_1217)
GTGCTGCATAGCTCTGTCGGAGGCAGGCTGACGGTACGATCACTCACACA
AGGGCTGCTGATGACTTACATAAGGGCTGCTAATGACCAACATACGGGCT
GCTGATCAGTCACATAAGGGGCTGCACCTGCACGTCAACTCGTATCACAT
GGCTCCTCCCATTGAGTATGGATGGGAGCTCACCCCCAAACCCCTTTGCG
CCCGTTGCCCTCAGACTCTGCACGTGGTTCGATTAAACGTCTCGCCAGGC
AGCACCTACAGTCCCAGGCTGTTGGAGGGGTTTATCAGGGCTGATGCACT
CCTCCAAGATCCAGCAGAGGAGAGGCTCAGGGACATCCTCATGCCACTGC
TTGATGGGAACAACCGCACCTGGGTGGTGGGGGAAGTTGGCACTGCAGAG
GTGAGGCGGTTATCTTTTGTCTTTCCCTAAGCTGATCGAGTGATAGGAGC
CCCCACCGCGGCATTTTGCTTTCGCTGACTCCGGGTCCATAAAATATCAC
AAATTGGATTGAGATTGAGCTATGTTAACTATGCTTACCCTAAGCTGACG
GAATGATAAGAGCCTCCACCTAGGCAGTTTGCTTTCGCTGACTCCGGGTC
CATAAATAGCACACATTGGATTGAGATTGAGTTTGAGACTGAGCTATGTT
AACCCTTAGAAAAGACTTAGCCCTAATGCCAGATCCCATTCTTTTCCTTT
TGCCCACTCAGGATTCATTTCCGGAAGATCTTGGAACCCTCAGATGCCTA
CAGAGTATGCACGGCAGAGAGTCGAGATGCCACCCCACCACTGGGGTTAG
CTTGGAGCAGCTGGAAATGCTGCAGCCAGGCGCAGTGGCAGGGCTAGAAG
GGGTCAGCCAGGCGAAGCAGCAGCAAGTGGATGAGAAGTCGCCTGGTGAC
AAGGGTGAAGTCAAGACTGAGGCTGAGGCTGACTTTGATGTGTTTAATGC
GTTGGCATCGGTGGTGGGACGTGCGAGAGCGACCAGTGCTGAGGCTCAGC
TGGAGAACCTCAGGTTGGCTGTTTCTGAGCGGCAGCAGGAGGTTGTGCCG
GAGAAGGATGCTCTCACTCACACCGAGGAGGTGTGCGCTACTGCAACTTC
CACCTCAACTGCAACTGCAACTGCAAGTGCTGGCGGTGGCAGCGAGAAGA
AGATAATCCGTGACATCAAGAGCGAGATCGAGGCGGTCATGTCCTCGTTC
TTGGCAGACAGGGATGAGCCAGATGAGTCAGAGCAACAGGAGGCTCTGGC
TCATCCGGCCAAGCAGCCAGGGCAGGTGACCATTGAGCCAACTGCCGGAG
CTGCACTAGATAGCCCACCTGAGCAGAAGCAGCAGCAGCCGAGCCTTCCG
CCAGCTCCCGCGTTGTCATCGGAAGTGACGGCTGATGTACCTTCGCCAAT
GTCACCGATGCCTATGCCGTCCATGTCAACGCCTGTGCCAGTACCTATGC
CCATGCTGCACAAGGTGGGAGCTGAACAGTTAGATGCTTCCACACATACC
AAACTAACCTTTGGACCTCCTCTTACCTCCTTGCAACTTGATTATCACAG
CTTCTTTCCTTCCATAAGTCAACTTTGCCCTTGCCAACTTGATTGACCCT
TTAATGCACTCTTCTTTTTATCTTCTTGCAACTTGACTACCACAGCTTCT
TTCCTCCATAAGACAACTCTGCCATTGCCAACTTGATTGACCCTTTCGTG
GACTTCTCTTTTATCTCCTTGCAACTTGACTATCACAGCTTCTTTCCTCT
ATAACACATCTCTGCCATTGCCAACCTGATTGACCCTTCCCCCCCGCCTT
GCTTAGGTGTCGGCAAAAACCCTCGGCCCATCACCCTCCAGCCTGGGCCT
CGTGGCGGGCTGCTCCCCCACCTCGGCCCACACGGCCACCACCCTCACCG
ACGGAGAAGTAATGCAGCAGAACAACAATGCGCTGCTGGCGGTGGTCAGG
GACGAGGTGGCGCTGAGGGAGAGAGCGCAGCAACAGATGAGGGAGCTGGA
GCAGGACCTGCTGGAGGTCAGTCACTCAGTCGGCAGCTTTTGTCCCCAGT
AGTAGAAGCATCAGTGATCGGTCGTGCTGCTCATGCTGCTGTGCCAGTCA
GTCGGTTGGCGGCTTTCGTCCCCGGTAGTAGCATCAGTGATCAGTCGTGC
TGCTCATGCTGCCGTGCCTCCCAGTCGTGTCAAGTCCTCTCATCATTATC
CGCTAGGCGTGTTTAGCAGCTTGCGAGCTTTGAGCTTCATCTCATGTGTC
ATCATCAACTAGGTGTTTTTAGCAGCTTGTGAGATGAGTGAGAGCTTGAC
CACGATGAGTGAGAGCTTACTCACGGACCTCTCACCTCTCATCCCCCTCC
CCTAGGCTTTAGCAGCCTGTGAACTGAGCCGTGATGGAGCTAGGCTGGAG
GCTGCCGAGCTCAAAGCTAAGCTGCGGCTGCTAGAGGCGGAGAGAGCTGA
TGCTCATGTGTTTGACGTCTACGAAGGGGACATCCAGAGGCTTGTCAGGT
GAATCAGATCAATGATGTTTTTATTATTAGACTTAGTTAGACTGCTTCAA
TTCTCCCTTTATGATGAGACTTAATTAGACTGCTTCACTTCTCCCATTAT
TATTAGACTTAATTAGACTGCTTCTCTGGTCCCAAAGGCTCCCTCTCATC
TCCTAAGCAAGCTGCTGCATGCTCTGCAAGCAACCCTGACACGACCTTTT
CCGCCCTGCTGCTCTCTCTTTTCTTCCTTTTTGTTTTATTTGCTTGCTTG
CTCCCAGTGAGGTCGAGGCACTCCGAGGCCGCAACCTTGCAGCGGAGATG
AGGCTGCTTGCAATGTCTTTACCCCCCAACAGCTCTTCCCCAGCGGTGAG
TCTGCTATTAGCTACTGCAGAATGAATGAACGCCCTAGCCTAGCACTGCC
CAGACCTCAGGCTCACGTACCCGCATCCGTTACCTCGGGAACTCATCTGC
TACTAGCTTTGATTTCTCTTGTATTGTTCCCTTAACTTTCCAATAGAGGA
TATGTAATCTGCAGCCGGCCAGCTCCAGCTCAGCTCTCTAACTGAGCTAG
ACTCACGTACCCACGCCCGTTACCTCTGGAACTCATCCACAGGCTCTTTC
TCATCTGGAGACGAGCAGCGTGGTGTTCCGCCCTCATCACCCGGAGGCAA
GTCTGAGTGCTGTCAAGGAGGTCAGGCGGAGGCTGAGGGAGAGCGAGATG
GAGTTAACTCGGGTGAAGCAGGAGAACGAGGCGTTTCGGCGGCAGCAGAG
GCGGTTCATGGCACAAGAGCGGCTGTTGGAAGAGCACAGCAGCCAGTCGG
CTCTGCTGGGGAGGCGGCTGCTGGACGCGGACCAGGAGCTGAGGGTGACG
CGGC
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Coding sequence (CDS) from alignment at C-australica_Contig_992:11413..14766+

>mRNA_C-australica_Contig_992.7.1 ID=mRNA_C-australica_Contig_992.7.1|Name=mRNA_C-australica_Contig_992.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1674bp|location=Sequence derived from alignment at C-australica_Contig_992:11413..14766+ (Chrysoparadoxa australica CS_1217)
GTGCTGCATAGCTCTGTCGGAGGCAGGCTGACGACTCTGCACGTGGTTCG
ATTAAACGTCTCGCCAGGCAGCACCTACAGTCCCAGGCTGTTGGAGGGGT
TTATCAGGGCTGATGCACTCCTCCAAGATCCAGCAGAGGAGAGGCTCAGG
GACATCCTCATGCCACTGCTTGATGGGAACAACCGCACCTGGGTGGTGGG
GGAAGTTGGCACTGCAGAGGATTCATTTCCGGAAGATCTTGGAACCCTCA
GATGCCTACAGAGTATGCACGGCAGAGAGTCGAGATGCCACCCCACCACT
GGGGTTAGCTTGGAGCAGCTGGAAATGCTGCAGCCAGGCGCAGTGGCAGG
GCTAGAAGGGGTCAGCCAGGCGAAGCAGCAGCAAGTGGATGAGAAGTCGC
CTGGTGACAAGGGTGAAGTCAAGACTGAGGCTGAGGCTGACTTTGATGTG
TTTAATGCGTTGGCATCGGTGGTGGGACGTGCGAGAGCGACCAGTGCTGA
GGCTCAGCTGGAGAACCTCAGGTTGGCTGTTTCTGAGCGGCAGCAGGAGG
TTGTGCCGGAGAAGGATGCTCTCACTCACACCGAGGAGGTGTGCGCTACT
GCAACTTCCACCTCAACTGCAACTGCAACTGCAAGTGCTGGCGGTGGCAG
CGAGAAGAAGATAATCCGTGACATCAAGAGCGAGATCGAGGCGGTCATGT
CCTCGTTCTTGGCAGACAGGGATGAGCCAGATGAGTCAGAGCAACAGGAG
GCTCTGGCTCATCCGGCCAAGCAGCCAGGGCAGGTGACCATTGAGCCAAC
TGCCGGAGCTGCACTAGATAGCCCACCTGAGCAGAAGCAGCAGCAGCCGA
GCCTTCCGCCAGCTCCCGCGTTGTCATCGGAAGTGACGGCTGATGTACCT
TCGCCAATGTCACCGATGCCTATGCCGTCCATGTCAACGCCTGTGCCAGT
ACCTATGCCCATGCTGCACAAGGTGTCGGCAAAAACCCTCGGCCCATCAC
CCTCCAGCCTGGGCCTCGTGGCGGGCTGCTCCCCCACCTCGGCCCACACG
GCCACCACCCTCACCGACGGAGAAGTAATGCAGCAGAACAACAATGCGCT
GCTGGCGGTGGTCAGGGACGAGGTGGCGCTGAGGGAGAGAGCGCAGCAAC
AGATGAGGGAGCTGGAGCAGGACCTGCTGGAGGCTTTAGCAGCCTGTGAA
CTGAGCCGTGATGGAGCTAGGCTGGAGGCTGCCGAGCTCAAAGCTAAGCT
GCGGCTGCTAGAGGCGGAGAGAGCTGATGCTCATGTGTTTGACGTCTACG
AAGGGGACATCCAGAGGCTTGTCAGTGAGGTCGAGGCACTCCGAGGCCGC
AACCTTGCAGCGGAGATGAGGCTGCTTGCAATGTCTTTACCCCCCAACAG
CTCTTCCCCAGCGGCTCTTTCTCATCTGGAGACGAGCAGCGTGGTGTTCC
GCCCTCATCACCCGGAGGCAAGTCTGAGTGCTGTCAAGGAGGTCAGGCGG
AGGCTGAGGGAGAGCGAGATGGAGTTAACTCGGGTGAAGCAGGAGAACGA
GGCGTTTCGGCGGCAGCAGAGGCGGTTCATGGCACAAGAGCGGCTGTTGG
AAGAGCACAGCAGCCAGTCGGCTCTGCTGGGGAGGCGGCTGCTGGACGCG
GACCAGGAGCTGAGGGTGACGCGG
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