mRNA_C-australica_Contig_99.21.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_99.21.2
Unique NamemRNA_C-australica_Contig_99.21.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_99contigC-australica_Contig_99:63726..66674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2037
Hectar predicted targeting categoryother localisation
Exons12
Cds size1296
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588856.2282844-UTR-C-australica_Contig_99:63725..641201682588856.2282844-UTR-C-australica_Contig_99:63725..64120Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 63726..64120 +
1682588856.3712277-UTR-C-australica_Contig_99:66328..666741682588856.3712277-UTR-C-australica_Contig_99:66328..66674Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 66329..66674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588856.2379754-CDS-C-australica_Contig_99:64120..642641682588856.2379754-CDS-C-australica_Contig_99:64120..64264Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 64121..64264 +
1682588856.2475731-CDS-C-australica_Contig_99:64341..644931682588856.2475731-CDS-C-australica_Contig_99:64341..64493Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 64342..64493 +
1682588856.2641969-CDS-C-australica_Contig_99:64562..646151682588856.2641969-CDS-C-australica_Contig_99:64562..64615Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 64563..64615 +
1682588856.274665-CDS-C-australica_Contig_99:64697..648501682588856.274665-CDS-C-australica_Contig_99:64697..64850Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 64698..64850 +
1682588856.2837741-CDS-C-australica_Contig_99:64931..649961682588856.2837741-CDS-C-australica_Contig_99:64931..64996Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 64932..64996 +
1682588856.2927184-CDS-C-australica_Contig_99:65074..651401682588856.2927184-CDS-C-australica_Contig_99:65074..65140Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 65075..65140 +
1682588856.3022316-CDS-C-australica_Contig_99:65222..653301682588856.3022316-CDS-C-australica_Contig_99:65222..65330Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 65223..65330 +
1682588856.3125293-CDS-C-australica_Contig_99:65454..655481682588856.3125293-CDS-C-australica_Contig_99:65454..65548Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 65455..65548 +
1682588856.3244598-CDS-C-australica_Contig_99:65633..657851682588856.3244598-CDS-C-australica_Contig_99:65633..65785Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 65634..65785 +
1682588856.3374844-CDS-C-australica_Contig_99:65869..659121682588856.3374844-CDS-C-australica_Contig_99:65869..65912Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 65870..65912 +
1682588856.3498776-CDS-C-australica_Contig_99:65987..661251682588856.3498776-CDS-C-australica_Contig_99:65987..66125Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 65988..66125 +
1682588856.3601341-CDS-C-australica_Contig_99:66200..663281682588856.3601341-CDS-C-australica_Contig_99:66200..66328Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 66201..66328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_99.21.2prot_C-australica_Contig_99.21.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_99 64121..66328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_99.21.2

>prot_C-australica_Contig_99.21.2 ID=prot_C-australica_Contig_99.21.2|Name=mRNA_C-australica_Contig_99.21.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=432bp
MPTFFDCTVPTIPPFVWPELTNRGKIFWMLTEAAMVASITFGGMEAHEFN
HLCRDGFYQGFADPAANFGGPAALEECQIPYSYMIMEQITRAGTWYLMRY
FGFSYFMVSPFDSVFAGPILDGTIGGTLWTSYSWIHARPNLNQWVNCEGG
DSIQANLFNAPGDDDCEFLRWDNMSVLFGWVATLGMAGELFSALIDTCSS
RPKLDKIFGKKTTHKLTQYPNTSWCFSLAPHVLIIAGIVCRAVFIEDNRE
REPFPDGDADAILLLDIWDLVLYTFFSYAILYMTSAAANPDRTFAQLAVG
PLVTIYALSFGLFTDSVSTPFWEACAIASGVSGWIGCSGGTCDQDALQAV
SDVLRWFGGYILADRFIRATMVALARGYQDYLRPQLMRMEEEAAASEAQL
AETGVAAPLLMQPLQLGMYVLPRQRSYHPYA*
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mRNA from alignment at C-australica_Contig_99:63726..66674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_99.21.2 ID=mRNA_C-australica_Contig_99.21.2|Name=mRNA_C-australica_Contig_99.21.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2949bp|location=Sequence derived from alignment at C-australica_Contig_99:63726..66674+ (Chrysoparadoxa australica CS_1217)
GGAGAGTGAGTCCGTGCGAAGGGTATAGGGTTGTAGAACATTTGCAGTGC
GGCCATAGCCATGTAGCTCGTCGTTTCATCCATTGGTTGGAGACACTGGA
GACATTAGATAAAAAGTTGTTTTTTATTGGCCAGCGTAGAGGCGCAGCAG
ACAGCAGGGTTTAACCGCTGTCCTCTTTGGGTTAGCGCTTACCTAGTTTT
TTTGTTTTGACGGGTACCAAGAAGAGATGGTTGGAGGAGACCAATCTCAA
TCTTAAGCTCTATCGTGCATACAAGAGTGCTCTGTACCAGCGAGTTTTCC
TCTTATTTTGTTTTGTTGAGGCTAGGAAGAAAAAAATCTGTTCAACTGAT
TTTCTCCCTCTCCTGCCTCTTGTCCCTCCTTCAGGTTCAGGAACAATGCC
CACTTTCTTTGATTGTACCGTACCTACAATCCCTCCCTTCGTATGGCCTG
AACTAACCAATCGGGGCAAGATCTTTTGGATGCTAACCGAGGCTGCCATG
GTTGCCTCCATTACCTTTGGTGGAATGGAAGCGCACGAGGTGAGCGCCAT
GCCTTTCTCCGTGAGCCTTGAGCCTCGATCCAACCTCATGCCCCCCCTCT
TTCCCCCCGCTCTCAGTTCAACCACCTGTGCAGGGACGGTTTCTACCAGG
GGTTTGCGGACCCAGCCGCTAATTTTGGCGGCCCTGCGGCTCTTGAGGAG
TGTCAGATACCCTACTCCTATATGATCATGGAGCAGATTACCCGTGCGGG
CACATGGTACCTCATGAGGTCAGTTATTTGCAGGGCAGGGTTCTGATTGC
AAGTAGGCCCCCTCTGACCCTCTCTCTCCTCATGCAGATACTTTGGCTTC
TCCTACTTTATGGTTTCGCCTTTCGATAGCGTGTTTGCAGGTGCCGTTTT
TCACTGTTGTGACTTGCATATCATGCCCCTTGTCACCAGCTAATGCTTTG
CTCTGTGCGTGCTGTGGTCTAGGGCCCATCCTGGACGGCACTATCGGAGG
CACCCTCTGGACCAGTTACTCATGGATCCATGCACGCCCGAACCTCAATC
AATGGGTTAACTGTGAGGGTGGTGACAGTATCCAGGCCAACCTGTTCAAT
GCACCAGGCGATGACGACTGTGAATGTATGCAATTCACCATCCCCACAGC
ATGTACCATTACCGTTTGCTCACACTCATCCTCATCCCGCTGCCTTGTAT
GTGCAGTCTTGAGGTGGGACAACATGTCTGTGCTGTTTGGATGGGTTGCC
ACCCTAGGCATGGCCGGAGAGGTGAGGAGCCAGCCGCACTGCCCTATTTG
ACGGCCGTTTGGCTCTACCCTTACACAACCCACCCCACTTCCCTCCCAGC
TCTTCAGTGCCCTTATCGACACCTGCTCAAGCAGACCCAAGCTTGACAAA
ATCTTCGGAAAGAAGGTAAATTGTCCCAGGCGTACATATATACCCTGAGG
GGTTTCCAGCTTCCTGACACGGCACAACATCCCTTCCCTCCCCTCAGACC
ACCCACAAGCTTACACAGTACCCCAACACATCCTGGTGCTTCTCCTTGGC
ACCACATGTGCTCATCATTGCTGGTATCGTCTGCAGGGCTGTCTTCATTG
AAGACGTGAGTCTACTCCAGACTTCACATCCCCCTTTGTGTCTGTTGCAG
CCGCTGATTGTCTTGTACCTCCGATTTTTGTTGCTTGCCCTGCCCTTTTA
ACTTAACTTGGGCTCCTCCGTATGTGCAGAACCGTGAACGTGAGCCCTTC
CCTGATGGTGATGCTGACGCCATTCTGCTTCTGGACATCTGGGACCTGGT
CCTTTACACCTTCTTTAGCTACGGTATGCATAGCACTAACTGTCAACAGC
AGCCTTTTAAGGCGGCTCAGTGTCCTCGCCCTTACCTTTTTTCCCTTGGC
ACCTGCAGCCATTCTCTACATGACCAGTGCTGCTGCAAACCCCGACCGAA
CTTTCGCCCAGCTGGCGGTCGGTCCCCTTGTCACGATCTACGCCCTTTCT
TTTGGCCTGTTCACGGATAGTGTAAGCACTCCCTTCTGGGAGGCTTGCGC
CATTGCTTCGGTGAGTGTCTGCTTGTGTTTATCCATACTGACACAATGTT
CTCCATCCATCCTAAAGCTTCTCTTTCCGCACTGTATTTTTTAGGGCGTA
AGTGGCTGGATTGGATGCTCTGGCGGCACCTGCGATCGTAAGACATGGCC
ATTGCCTGAAACTCCTGCACACTGCCAGTGCCACTAACGTGCCTCCCTGA
AAACTCTCTCAGAGGATGCCCTGCAGGCTGTGTCTGACGTTCTGCGATGG
TTTGGTGGCTACATCCTGGCCGACCGTTTCATCCGTGCTACCATGGTTGC
CTTGGCTAGGGGCTACCAAGACTACCTTAGGCCTCAGCTCATGAGAATGG
GTAGGCAAACTTTCCAACCACCCAATCTATCTCTTGTGACCTGCTCGGTA
ATTTATTGATTGCCCACCTCTCCAGAAGAAGAGGCTGCTGCATCTGAGGC
TCAGCTTGCTGAGACTGGAGTTGCAGCTCCACTCCTGATGCAGCCCCTCC
AGCTGGGTATGTACGTTTTGCCTCGTCAACGGTCCTACCACCCATATGCC
TAAAGAGAGTGCAATTGTATGCTTCCCACTCCTCTACAGACGTTGATGTC
AAGGTTTCTAACTAGGGCTTCGGCAAATAAGGCCCGAGGTGGTCTGGTGT
AGAACCTTGTGCTAGTCATAGTGATGTTCGAGTGCAACTCACCACCTTGC
TGAATATATCATCAGTAAAGTGGTTTCTGTAGTGATCAGAGGTACTGCTT
TCCTCAAGTGTTCGCATTGTTCAATGAGATTATCTAACCGTATACAGTAG
TGTAGGCAAAGCATATCAAGTGGTTTTATTGCAACCCGAGTAGTCAGGAT
TGCAACCCGAGTAATCAGGTATGAGGTAGTTAATCTTGTTTGCGTGTTT
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Coding sequence (CDS) from alignment at C-australica_Contig_99:63726..66674+

>mRNA_C-australica_Contig_99.21.2 ID=mRNA_C-australica_Contig_99.21.2|Name=mRNA_C-australica_Contig_99.21.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1296bp|location=Sequence derived from alignment at C-australica_Contig_99:63726..66674+ (Chrysoparadoxa australica CS_1217)
ATGCCCACTTTCTTTGATTGTACCGTACCTACAATCCCTCCCTTCGTATG
GCCTGAACTAACCAATCGGGGCAAGATCTTTTGGATGCTAACCGAGGCTG
CCATGGTTGCCTCCATTACCTTTGGTGGAATGGAAGCGCACGAGTTCAAC
CACCTGTGCAGGGACGGTTTCTACCAGGGGTTTGCGGACCCAGCCGCTAA
TTTTGGCGGCCCTGCGGCTCTTGAGGAGTGTCAGATACCCTACTCCTATA
TGATCATGGAGCAGATTACCCGTGCGGGCACATGGTACCTCATGAGATAC
TTTGGCTTCTCCTACTTTATGGTTTCGCCTTTCGATAGCGTGTTTGCAGG
GCCCATCCTGGACGGCACTATCGGAGGCACCCTCTGGACCAGTTACTCAT
GGATCCATGCACGCCCGAACCTCAATCAATGGGTTAACTGTGAGGGTGGT
GACAGTATCCAGGCCAACCTGTTCAATGCACCAGGCGATGACGACTGTGA
ATTCTTGAGGTGGGACAACATGTCTGTGCTGTTTGGATGGGTTGCCACCC
TAGGCATGGCCGGAGAGCTCTTCAGTGCCCTTATCGACACCTGCTCAAGC
AGACCCAAGCTTGACAAAATCTTCGGAAAGAAGACCACCCACAAGCTTAC
ACAGTACCCCAACACATCCTGGTGCTTCTCCTTGGCACCACATGTGCTCA
TCATTGCTGGTATCGTCTGCAGGGCTGTCTTCATTGAAGACAACCGTGAA
CGTGAGCCCTTCCCTGATGGTGATGCTGACGCCATTCTGCTTCTGGACAT
CTGGGACCTGGTCCTTTACACCTTCTTTAGCTACGCCATTCTCTACATGA
CCAGTGCTGCTGCAAACCCCGACCGAACTTTCGCCCAGCTGGCGGTCGGT
CCCCTTGTCACGATCTACGCCCTTTCTTTTGGCCTGTTCACGGATAGTGT
AAGCACTCCCTTCTGGGAGGCTTGCGCCATTGCTTCGGGCGTAAGTGGCT
GGATTGGATGCTCTGGCGGCACCTGCGATCAGGATGCCCTGCAGGCTGTG
TCTGACGTTCTGCGATGGTTTGGTGGCTACATCCTGGCCGACCGTTTCAT
CCGTGCTACCATGGTTGCCTTGGCTAGGGGCTACCAAGACTACCTTAGGC
CTCAGCTCATGAGAATGGAAGAAGAGGCTGCTGCATCTGAGGCTCAGCTT
GCTGAGACTGGAGTTGCAGCTCCACTCCTGATGCAGCCCCTCCAGCTGGG
TATGTACGTTTTGCCTCGTCAACGGTCCTACCACCCATATGCCTAA
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