mRNA_C-australica_Contig_99.20.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_99.20.1
Unique NamemRNA_C-australica_Contig_99.20.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_99contigC-australica_Contig_99:63210..63605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588856.185053-UTR-C-australica_Contig_99:63209..633091682588856.185053-UTR-C-australica_Contig_99:63209..63309Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 63210..63309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588856.1941416-CDS-C-australica_Contig_99:63309..633531682588856.1941416-CDS-C-australica_Contig_99:63309..63353Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 63310..63353 -
1682588856.2028766-CDS-C-australica_Contig_99:63439..636051682588856.2028766-CDS-C-australica_Contig_99:63439..63605Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 63440..63605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_99.20.1prot_C-australica_Contig_99.20.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_99 63310..63605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_99.20.1

>prot_C-australica_Contig_99.20.1 ID=prot_C-australica_Contig_99.20.1|Name=mRNA_C-australica_Contig_99.20.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=70bp
SARGRGQLWKGGVATENRKWPQITNNERTRVHSECGDRRSWLPDYQATRP
GSKAKEPELPRPEPKQLIA*
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mRNA from alignment at C-australica_Contig_99:63210..63605-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_99.20.1 ID=mRNA_C-australica_Contig_99.20.1|Name=mRNA_C-australica_Contig_99.20.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=396bp|location=Sequence derived from alignment at C-australica_Contig_99:63210..63605- (Chrysoparadoxa australica CS_1217)
TCAGCAAGGGGTCGAGGCCAACTCTGGAAAGGAGGAGTGGCAACCGAAAA
CCGAAAATGGCCCCAAATAACGAATAACGAGAGAACGAGAGTACACTCGG
AATGCGGAGATCGGAGATCTTGGCTACCAGACTACCAGGCCACCAGGCCG
GGGTCAAAGGCCAAAGGTGGGTCACAAATGCCCATGCAAACACACAGAGG
TAGCCCACAAATAATGAAGCCAACCATTCCTATATCACATTGTGTGCCAC
AGAGCCCGAACTACCACGTCCAGAGCCAAAGCAACTGATCGCCTAGTCCA
AAAGTATTAGTGTGGTCTGGACCTGCCCCAAAAAGAAGAAGGGGAGCAAC
ATTTGGCCATACTATCGGATCACATAATATATTCGCATCTGCTTCA
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Coding sequence (CDS) from alignment at C-australica_Contig_99:63210..63605-

>mRNA_C-australica_Contig_99.20.1 ID=mRNA_C-australica_Contig_99.20.1|Name=mRNA_C-australica_Contig_99.20.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=210bp|location=Sequence derived from alignment at C-australica_Contig_99:63210..63605- (Chrysoparadoxa australica CS_1217)
TCAGCAAGGGGTCGAGGCCAACTCTGGAAAGGAGGAGTGGCAACCGAAAA
CCGAAAATGGCCCCAAATAACGAATAACGAGAGAACGAGAGTACACTCGG
AATGCGGAGATCGGAGATCTTGGCTACCAGACTACCAGGCCACCAGGCCG
GGGTCAAAGGCCAAAGAGCCCGAACTACCACGTCCAGAGCCAAAGCAACT
GATCGCCTAG
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