mRNA_C-australica_Contig_989.7.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_989.7.2
Unique NamemRNA_C-australica_Contig_989.7.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_989.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_989contigC-australica_Contig_989:14924..17598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1620
Hectar predicted targeting categorymitochondrion
Exons8
Cds size1488
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_989.7.2prot_C-australica_Contig_989.7.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_989 15034..17576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588854.9805598-UTR-C-australica_Contig_989:14923..150331682588854.9805598-UTR-C-australica_Contig_989:14923..15033Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 14924..15033 -
1682588855.0633247-UTR-C-australica_Contig_989:17576..175981682588855.0633247-UTR-C-australica_Contig_989:17576..17598Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 17577..17598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588854.9894345-CDS-C-australica_Contig_989:15033..153001682588854.9894345-CDS-C-australica_Contig_989:15033..15300Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 15034..15300 -
1682588854.99784-CDS-C-australica_Contig_989:15603..156961682588854.99784-CDS-C-australica_Contig_989:15603..15696Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 15604..15696 -
1682588855.0062742-CDS-C-australica_Contig_989:15866..162651682588855.0062742-CDS-C-australica_Contig_989:15866..16265Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 15867..16265 -
1682588855.0149765-CDS-C-australica_Contig_989:16393..164951682588855.0149765-CDS-C-australica_Contig_989:16393..16495Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 16394..16495 -
1682588855.0243292-CDS-C-australica_Contig_989:16685..168081682588855.0243292-CDS-C-australica_Contig_989:16685..16808Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 16686..16808 -
1682588855.0342982-CDS-C-australica_Contig_989:16919..170031682588855.0342982-CDS-C-australica_Contig_989:16919..17003Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 16920..17003 -
1682588855.0437868-CDS-C-australica_Contig_989:17083..171851682588855.0437868-CDS-C-australica_Contig_989:17083..17185Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 17084..17185 -
1682588855.0556178-CDS-C-australica_Contig_989:17258..175761682588855.0556178-CDS-C-australica_Contig_989:17258..17576Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 17259..17576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_989.7.2

>prot_C-australica_Contig_989.7.2 ID=prot_C-australica_Contig_989.7.2|Name=mRNA_C-australica_Contig_989.7.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=496bp
MFLISRSKAYARSLVWRSLARAFTTPQLEQSRAGSDQSSLSSHAAYPAST
TGPLDPQERTGLKRGRGASRPALGWTNSRDQRPKWRAQRDLMREIQRLGK
ARRWREVIPMMIRAQERGLELNISVYNAAIAVMNRNNQWREAYKLTAVMH
PDSKKRATTAIHILEALQAHGSPCLQPDLHTYSCLITLSGIAWKLPHALE
LLAMLKESELQPSQVIYNSLIRACGETNSPDMALEFFHEMLQEGIRPCKV
TYGSLLHAYGRQGGAAKAQQLFDGMQQHGLSPNMVHYNSLIMAYGVADLA
SKAVAVYHDLVATGFVPSSHTYTNLLHACSAPSGSWELAVQFFNEIDKPT
LTHYNALIDACGKDGQIELAHKKLKEMKRKGVQPCVVSYSAVIACYVKAG
CMKEAKEVLKDMQADGISPNYVTYNTLMEPVVAACDWKEARRMYLELLSF
GEWTHWSSVKYDYLDLHHCNKGLALAAVRYVLKEMLREGQWLSLT*
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mRNA from alignment at C-australica_Contig_989:14924..17598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_989.7.2 ID=mRNA_C-australica_Contig_989.7.2|Name=mRNA_C-australica_Contig_989.7.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2675bp|location=Sequence derived from alignment at C-australica_Contig_989:14924..17598- (Chrysoparadoxa australica CS_1217)
CCTTACGCATACCGCGCATCGCATGTTTTTGATTAGTCGGAGCAAGGCTT
ATGCCCGTTCCCTGGTTTGGAGAAGTCTAGCTCGTGCCTTCACCACCCCA
CAGCTCGAGCAGAGCAGAGCTGGAAGCGATCAAAGCAGCTTAAGCTCTCA
TGCCGCTTATCCTGCGTCGACTACGGGACCCTTGGACCCACAGGAGAGAA
CGGGCTTGAAGCGCGGCAGAGGAGCTTCTAGACCAGCCCTTGGGTGGACG
AACAGCAGGGATCAGAGGCCAAAGTGGCGGGCGCAGAGAGACTTAATGCG
GGAGATACAGAGACTGGGAAAGGCTAGAAGATGGAGGGAGGTAAGCTAGA
AGCAGAGGCATGGGCCATTCCTCTTCCTCCTTGTTCAATGATACGTGTAT
CTCTCCTCTTCAGGTGATACCAATGATGATCAGGGCTCAAGAAAGAGGGT
TAGAACTTAATATCAGCGTATACAATGCTGCCATTGCAGTCATGAATCGG
AATAATCAATGGAGGGTAGAGTTAACACATGACTTGCGTCTCAGCTGGCT
CCATCTCATCCCATCCCATCCCATCTCTGCATCACTCTTTCTTAGGAGGC
ATACAAACTGACTGCAGTTATGCATCCTGATAGCAAGAAGCGTGCAACCA
CAGCAATACACATTCTCGAAGCACTGCAGGTGGTAACTAATCGCTGACAC
CTTGACATCTAGTCTCTTCTCTCTCTCCATCCACCCCCTCTTGCTCACCT
AACTCAGCACCCGCTGACCCTTTCCTTTCTCCACATCAAGGCCCATGGCA
GCCCATGTCTCCAACCAGACCTTCATACCTACAGCTGCTTGATAACCCTG
TCTGGGATAGCGTGGAAGCTTCCCCACGCATTGGAATTGTTAGCCATGCT
AAAAGAGTCGGAGGTGGCTGCATCTCGCACATCTCAAACATGTCACCTAG
ACGATGACTTGCAACACCCTGTAGTTTGACCACACCCTGCTGCTGTTGTT
GCTATTCCTGCCCGCTTAATTACTTTCACCGGCCTCACCGCCCCCAGCCC
TTCCATGTACTAAACAAACCTCTTCACATTCACATTTACCTTGACCATAC
CAGTTGCAGCCAAGTCAAGTCATCTACAATTCACTTATTAGAGCCTGTGG
CGAGACAAACTCGCCTGACATGGCATTAGAGTTCTTTCACGAGATGCTCC
AGGAGGTACTCCTCATTCAAGTTGTAGTTGTCATCCCCCAGTAGTATCCT
AGTAGTGACCTAGTAGTAGACTGATCACGCTGCCTTTGGCATGGCATGCC
ATTTAACTCACCCCTACACTGGCATTATATCAGGGCATACGACCATGTAA
AGTAACGTATGGCAGCTTGCTACACGCCTATGGGCGGCAAGGAGGAGCTG
CAAAGGCCCAGCAGCTGTTTGATGGCATGCAGCAGCATGGGCTATCCCCC
AACATGGTCCACTACAACAGCCTGATAATGGCTTATGGAGTGGCTGACCT
AGCCAGCAAGGCAGTGGCAGTATACCATGATTTGGTTGCCACAGGCTTTG
TGCCCTCCTCGCATACGTACACCAACCTGCTTCATGCATGTAGCGCGCCA
AGTGGTAGCTGGGAGCTGGCAGTACAGTTCTTTAATGAGATTGACAAGCC
AACGCTTACCCACTACAATGCATTGATTGACGCCTGTGGCAAAGACGGCC
AGATTGAGCTCGCGCATAAGAAGCTAAAGGAGGTGGGTCTTTGCTTAAGT
TTTGTCTCTTGCTTCCGCATTTATTTTGTCTTGCATCTGACCATGTCATT
GAAAGGATGCTATCATCAACCATACTGCTGTAGCTAGTGAGTTATGCGAG
TTAGTTATTCCAGGTGCCTGACCCGCTCTCCTTACTCCTTCCTGGTTGTC
AGATGAAGAGAAAAGGTGTCCAACCATGTGTTGTTTCTTACAGTGCTGTT
ATTGCATGTTACGTCAAAGCTGGGTGTATGAAGGAAGCTAAGGAGGTAAC
ATTGAGAGTGTAGTGAATGGAGGAGGTGATGAGAACATGGTTTGCATGAT
ATAGACTGAATCAAAGTTGATATAATTAGGCACTGGAAAATAGGGGTTGG
CTTACACTCCCACTACTCTCCTTTTGATATCATGTGGCCTGGGTCCTGCT
GCGGCTTTATGTATCATCTTACATACGCTGATGCCAAACATTGTCCTTGT
CCATTTGCATTGCGATAGACTGCTGGTAAAGCGCAGCTCTTTGCTGTATG
CTGCATCCTGCCTCAGCAATCATGACCTAGTTACTCTGTATGCCTCAGGT
GCTTAAGGATATGCAGGCAGATGGCATCTCACCAAATTATGTCACGTACA
ACACTCTCATGGAGCCTGTCGTTGCAGCCTGTGATTGGAAGGAAGCAAGA
AGGATGTATTTGGAGCTGCTGTCATTCGGAGAGTGGACTCATTGGAGCTC
GGTCAAGTATGATTATCTTGACTTGCACCATTGCAACAAGGGTTTGGCAC
TTGCTGCTGTGAGATATGTCTTGAAGGAGATGTTAAGAGAAGGTCAGTGG
CTCTCACTTACATGACCTTACTTGGCCTCTACTACCACTTGTACCACTGT
ATTGTCACACCAGGGAAAAGCATTGATTCAATTAGGCATGACCCAAGGTC
AGATCTCGTCATCATAACTGGCAGC
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Coding sequence (CDS) from alignment at C-australica_Contig_989:14924..17598-

>mRNA_C-australica_Contig_989.7.2 ID=mRNA_C-australica_Contig_989.7.2|Name=mRNA_C-australica_Contig_989.7.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1488bp|location=Sequence derived from alignment at C-australica_Contig_989:14924..17598- (Chrysoparadoxa australica CS_1217)
ATGTTTTTGATTAGTCGGAGCAAGGCTTATGCCCGTTCCCTGGTTTGGAG
AAGTCTAGCTCGTGCCTTCACCACCCCACAGCTCGAGCAGAGCAGAGCTG
GAAGCGATCAAAGCAGCTTAAGCTCTCATGCCGCTTATCCTGCGTCGACT
ACGGGACCCTTGGACCCACAGGAGAGAACGGGCTTGAAGCGCGGCAGAGG
AGCTTCTAGACCAGCCCTTGGGTGGACGAACAGCAGGGATCAGAGGCCAA
AGTGGCGGGCGCAGAGAGACTTAATGCGGGAGATACAGAGACTGGGAAAG
GCTAGAAGATGGAGGGAGGTGATACCAATGATGATCAGGGCTCAAGAAAG
AGGGTTAGAACTTAATATCAGCGTATACAATGCTGCCATTGCAGTCATGA
ATCGGAATAATCAATGGAGGGAGGCATACAAACTGACTGCAGTTATGCAT
CCTGATAGCAAGAAGCGTGCAACCACAGCAATACACATTCTCGAAGCACT
GCAGGCCCATGGCAGCCCATGTCTCCAACCAGACCTTCATACCTACAGCT
GCTTGATAACCCTGTCTGGGATAGCGTGGAAGCTTCCCCACGCATTGGAA
TTGTTAGCCATGCTAAAAGAGTCGGAGTTGCAGCCAAGTCAAGTCATCTA
CAATTCACTTATTAGAGCCTGTGGCGAGACAAACTCGCCTGACATGGCAT
TAGAGTTCTTTCACGAGATGCTCCAGGAGGGCATACGACCATGTAAAGTA
ACGTATGGCAGCTTGCTACACGCCTATGGGCGGCAAGGAGGAGCTGCAAA
GGCCCAGCAGCTGTTTGATGGCATGCAGCAGCATGGGCTATCCCCCAACA
TGGTCCACTACAACAGCCTGATAATGGCTTATGGAGTGGCTGACCTAGCC
AGCAAGGCAGTGGCAGTATACCATGATTTGGTTGCCACAGGCTTTGTGCC
CTCCTCGCATACGTACACCAACCTGCTTCATGCATGTAGCGCGCCAAGTG
GTAGCTGGGAGCTGGCAGTACAGTTCTTTAATGAGATTGACAAGCCAACG
CTTACCCACTACAATGCATTGATTGACGCCTGTGGCAAAGACGGCCAGAT
TGAGCTCGCGCATAAGAAGCTAAAGGAGATGAAGAGAAAAGGTGTCCAAC
CATGTGTTGTTTCTTACAGTGCTGTTATTGCATGTTACGTCAAAGCTGGG
TGTATGAAGGAAGCTAAGGAGGTGCTTAAGGATATGCAGGCAGATGGCAT
CTCACCAAATTATGTCACGTACAACACTCTCATGGAGCCTGTCGTTGCAG
CCTGTGATTGGAAGGAAGCAAGAAGGATGTATTTGGAGCTGCTGTCATTC
GGAGAGTGGACTCATTGGAGCTCGGTCAAGTATGATTATCTTGACTTGCA
CCATTGCAACAAGGGTTTGGCACTTGCTGCTGTGAGATATGTCTTGAAGG
AGATGTTAAGAGAAGGTCAGTGGCTCTCACTTACATGA
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