Homology
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)
HSP 1 Score: 166 bits (419), Expect = 1.730e-49
Identity = 75/102 (73.53%), Postives = 93/102 (91.18%), Query Frame = 2
Query: 86 MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
+++A A K+E++LDL KY+D+GVRVKFQGGRE+ G+LKGYDQLVNLVLDECVEY+RDP DPY++TD TR +G+VVCRGTQVSLI+P+DGTEEIANPF+ EE
Sbjct: 20 VAMAQASKKESILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAEE 121
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA)
HSP 1 Score: 163 bits (412), Expect = 1.010e-48
Identity = 73/95 (76.84%), Postives = 89/95 (93.68%), Query Frame = 2
Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
++E++LDL KY+D+GVRVKFQGGRE+HG+LKGYDQLVNLVLDE VEY+RDP DPY++T+ TR +G+VVCRGTQVSLI+P+DGTEEIANPFLQ EE
Sbjct: 5 RKESILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVEE 99
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)
HSP 1 Score: 162 bits (411), Expect = 1.430e-48
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 2
Query: 104 KKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEE 388
+K+ENVLDL KYLD+GVRVKFQGGRE+ G+LKGYDQLVNLVLD+CVE+IRDP+DPY++TD TR +GLVVCRGTQVSLI+P+DG EEIANPFL E
Sbjct: 4 RKKENVLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAE 98
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA)
HSP 1 Score: 160 bits (406), Expect = 9.270e-48
Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query: 92 VADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
+A KRENVLDL KY+D+GVRVKFQGGRE+HG+LKG+DQLVNLVLDE VE++RDP DPY++T+ TR +GLVVCRG QVSLI+PVDG EEIANPFLQ EE
Sbjct: 1 MATGGKRENVLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFLQMEE 100
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)
HSP 1 Score: 155 bits (393), Expect = 8.420e-46
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 2
Query: 86 MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEE 388
M+ K+RE VLDL KYLD+GVRVK QGGRE+HG+LKG+D LVN+VLDEC+E+IRDP DPYKLT+ TR++GLVVCRGTQVSLI+P DG EEI NPF+ E
Sbjct: 1 MAEVKKKERETVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPE 101
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
K3WSH5_GLOUD (Sm domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSH5_GLOUD)
HSP 1 Score: 154 bits (388), Expect = 6.180e-45
Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 2
Query: 95 ADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
+ A +++ +LDL KY+D+ VRVKF GGRE+HG LKGYDQLVNLVLD+CVE++RDP D Y+LT+ TR++GLVVCRGT V LI+PVDGTEEI NPFLQ+EE
Sbjct: 12 SSAPRKDPILDLGKYIDQPVRVKFHGGREVHGFLKGYDQLVNLVLDDCVEFLRDPNDEYRLTEETRNVGLVVCRGTSVMLISPVDGTEEIPNPFLQQEE 110
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)
HSP 1 Score: 152 bits (383), Expect = 3.880e-44
Identity = 66/95 (69.47%), Postives = 86/95 (90.53%), Query Frame = 2
Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
K+E++LD+ KY+D+GVRVKFQGGRE+ G LKG+DQLVNLVLD+C E++RDP DPY++TD +R +G+VVCRGTQVSLI+PVDGTEEI+NPF+ + E
Sbjct: 17 KKESILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIAQTE 111
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
A0A8K1CTC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTC3_PYTOL)
HSP 1 Score: 152 bits (383), Expect = 5.990e-44
Identity = 69/95 (72.63%), Postives = 84/95 (88.42%), Query Frame = 2
Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
+R+ +LDLAKY+D+ VRVKF GGRE+HG LKGYDQLVNLVLD+CVEY+RDP+D ++TD TR +GLVVCRGT V+LI+PVDGTEEI NPFL +EE
Sbjct: 33 RRDQILDLAKYIDQPVRVKFFGGREVHGFLKGYDQLVNLVLDDCVEYLRDPSDASRVTDETRKVGLVVCRGTSVTLISPVDGTEEIPNPFLPQEE 127
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)
HSP 1 Score: 149 bits (375), Expect = 4.950e-43
Identity = 68/100 (68.00%), Postives = 86/100 (86.00%), Query Frame = 2
Query: 92 VADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
V A K++ VLDL KYLD+ V V+FQGGRE+ G+L+G+DQL+NLVLDE E +RDP DPY+LTD TR++GLV+CRGTQVSLI+PV+GTEEIANPF+Q E+
Sbjct: 4 VVQATKKDTVLDLNKYLDKAVCVRFQGGREVTGILRGFDQLINLVLDESKETLRDPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAED 103
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match:
F0WMT1_9STRA (U6 snRNAassociated Smlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMT1_9STRA)
HSP 1 Score: 149 bits (375), Expect = 7.610e-43
Identity = 67/95 (70.53%), Postives = 83/95 (87.37%), Query Frame = 2
Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
++EN+LDL KY+D V VKF+GGR++HG LKGYDQLVNLVLDEC+E++R+ D Y+L+D TR IGLVVCRGT V LI+PVDGTEEIANPF+Q+EE
Sbjct: 25 RKENILDLDKYIDHSVCVKFRGGRQVHGTLKGYDQLVNLVLDECIEFLREDNDSYRLSDKTRSIGLVVCRGTTVMLISPVDGTEEIANPFIQQEE 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.73e-49 / Id = 73.53 Expect = 1.01e-48 / Id = 76.84 Expect = 1.43e-48 / Id = 78.95 Expect = 9.27e-48 / Id = 76.00 Expect = 8.42e-46 / Id = 71.29 Expect = 6.18e-45 / Id = 69.70 Expect = 3.88e-44 / Id = 69.47 Expect = 5.99e-44 / Id = 72.63 Expect = 4.95e-43 / Id = 68.00 Expect = 7.61e-43 / Id = 70.53 Sequence A0A7S2CML5_9STRA A0A7S2ST35_9STRA A0A836C8L6_9STRA A0A7S2XWT1_9STRA D8LPU6_ECTSI K3WSH5_GLOUD A0A7S2BSU7_9STRA A0A8K1CTC3_PYTOL A0A4D9CX90_9STRA F0WMT1_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D8LPU6 Preferred name LSM7 PFAMs LSM Model size 611 Max annot lvl 2759|Eukaryota KEGG ko ko:K12626,ko:K16353 KEGG Pathway ko03018,ko03040,map03018,map03040 KEGG Module M00354,M00396,M00397 Hectar predicted targeting category other localisation GOs GO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904 Exons 4 Evalue 1.01e-47 EggNOG OGs KOG1781@1|root,KOG1781@2759|Eukaryota Ec32 ortholog description Sm-like protein LSm7 Ec32 ortholog Ec-18_002540.1 Description nuclear-transcribed mRNA catabolic process Cds size 315 COG category J BRITE ko00000,ko00001,ko00002,ko03019,ko03041,ko04516
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588855.3592186-UTR-C-australica_Contig_989:9374..9413 1682588855.3592186-UTR-C-australica_Contig_989:9374..9413 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_989 9375..9413 + 1682588855.3699887-UTR-C-australica_Contig_989:9597..9643 1682588855.3699887-UTR-C-australica_Contig_989:9597..9643 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_989 9598..9643 + 1682588855.4189124-UTR-C-australica_Contig_989:10382..10593 1682588855.4189124-UTR-C-australica_Contig_989:10382..10593 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_989 10383..10593 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588855.380173-CDS-C-australica_Contig_989:9643..9757 1682588855.380173-CDS-C-australica_Contig_989:9643..9757 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_989 9644..9757 + 1682588855.3902152-CDS-C-australica_Contig_989:9884..10010 1682588855.3902152-CDS-C-australica_Contig_989:9884..10010 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_989 9885..10010 + 1682588855.4005964-CDS-C-australica_Contig_989:10307..10382 1682588855.4005964-CDS-C-australica_Contig_989:10307..10382 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_989 10308..10382 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_989.4.1
>prot_C-australica_Contig_989.4.1 ID=prot_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=105bp
MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDE back to top mRNA from alignment at C-australica_Contig_989:9375..10593+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_989.4.1 ID=mRNA_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1219bp|location=Sequence derived from alignment at C-australica_Contig_989:9375..10593+ (Chrysoparadoxa australica CS_1217)GTCAGGTTGAGAGAAATAGAGTTACGCGCGTAGATACAG GTGGTGTAGGT
AGTGTGGGTCCAAAGTAGCTCCCCAGCGCGTTGCATTGCCCGACCCCACC
AAAGATACAAGCTTTCCCAGCTCCATCCTCGTACCCATCGCCCTCAACCC
CCGTAACCCTCAGCGCTGCCACCCGCTAATACGCTTAGAGTAAGGTAGAG
GACTAACTCAGCTATCTCTCCAGGCTTCTAGGGCAAGGCTGCAAAGGGGT
GCCCCGGCAGCCACTGGTG ATGAGTGTAGCTGATGCTAAGAAGAGGGAAA
ATGTCCTAGATCTTGCCAAGTACCTGGACAGAGGAGTTAGGGTCAAGTTC
CAAGGAGGCAGGGAGATCCACGGACTCCTCAAG GTTAGCCTCTTAGGCTC
TTGTATTGCCTGGTCACTGAGTAACCTAATCTCTTCTCTCTGTTCTCTCT
GTTCTCTCTGTGATCATGACAGTCTAACTCATGGGTTTGCTTTGTCTTGT
GCACTTTCAGGGTTATGATCAGCTAGTTAACTTGGTGCTGGATGAGTGCG
TGGAATACATTAGGGACCCTGCAGACCCATACAAGCTCACTGATGCTACC
AGGGATATTGGCCTGGTGGTGTGCAGAGGGACTCAG GTAGGTGGTAGGCG
GTAGGTGGGTTACGATGAATGAGATATGCCTGGAATGAGAGAGAGGATTG
GCTATTGGATGCTGGCTAGTGATGTGATACATTGGAAGGAGCTGCATGAG
ATGCAGAGGGTGGAGGGTGAATAACGCACACCATGCTCATCAAGTTATCG
CTTTGTTTCCTTTAGAATGAGTTCCATCCAGGCTGCTATCCCTAACTCCT
ACAAAATCCCTCTGCTGTTCTCCCGTGTTCTGTTCCTTAACCATTCCTCA
CAAGTACTCAATTAGCCACTCCTTCTCGAGTAGGTGAGTTTAATAGCTCC
TGTGGATGGGACGGAAGAGATTGCGAACCCGTTCTTGCAAGAGGAAGAAG
GCTCTTGA GGGAACCTTTTATGGGATACTCTTGCATTGCAATAATAGAGA
GTTTTTTGTCCTATTTTGCTCCTGAACTGACGAACAACCTTCGTCTTTGC
TGCATTTTTAAGCTCGGGGAACTTATCGCGAGGGATCCTTATCACGAATT
CGCGATAGGTATTGAGGCGACCTCAAGTCGAAAACCCTTCGCCCCCAATC
TGAACGTAGAGAAATAAAT back to top Coding sequence (CDS) from alignment at C-australica_Contig_989:9375..10593+
>mRNA_C-australica_Contig_989.4.1 ID=mRNA_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=315bp|location=Sequence derived from alignment at C-australica_Contig_989:9375..10593+ (Chrysoparadoxa australica CS_1217) back to top