mRNA_C-australica_Contig_989.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_989.3.1
Unique NamemRNA_C-australica_Contig_989.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A836CNM3_9STRA (ABC transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM3_9STRA)

HSP 1 Score: 476 bits (1226), Expect = 1.730e-159
Identity = 246/431 (57.08%), Postives = 314/431 (72.85%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELRCAITLNGPSHERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRA-QISEEFNFLLESRNMESIANSLEEAVPAVTVPRPRLASRRILCMTYLEGMPLSSLVSPTGFSRKLFARKGRKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWEGRVTEVVDRHHD 1748
            RAL+FW  +  IY+SYK +EL   + L G + E K E  W  LHELNS+RML +CL+LR FYLK GQFLGTRHDFMP QY  KL  L D VP MPA Q   LIE GL  KI +LFS L+L  P+GSASISQVH G L S G++VAVKVQ+P+AE +M+ DL NLR+LA FL + E+ FDLVSP E +R   IS EF+FL E+ N++ +  SL  AVP+V +P   LASRR+L MT++EG+P + LV PTGFSR+LFA KG+K+L  LA+AWG+M+F EG FNADPHPGN+LLM  M++GLLDWG  K V   +Q +LA LM +       +IA  F  LG++V +P+D  S+R+LA SMFE++DV G+++SPF   NAL+ N VT+FP ELFFVLRSVQ+LRGL+HGMGV FS+A AWE  +  ++D +H+
Sbjct:    5 RALRFWLMSSTIYLSYKRMELVMRLGLGGNTEEEK-EATWNALHELNSDRMLAMCLELRAFYLKMGQFLGTRHDFMPKQYLRKLSQLHDDVPPMPAEQVGPLIEKGLGVKIGELFSSLNLTHPVGSASISQVHDGVLRSNGQRVAVKVQYPDAEHVMLADLKNLRKLAAFLQEHELNFDLVSPGEMLRYFGISLEFDFLKEANNIDRMHASLASAVPSVVLPETVLASRRVLVMTFVEGLPFTKLVVPTGFSRRLFASKGKKMLNTLAEAWGHMLFVEGCFNADPHPGNMLLMRDMKIGLLDWGQVKSVDRALQVQLARLMRAFLADDPHQIAQEFLGLGVKVSNPEDSTSLRQLALSMFESRDVKGMVFSPFSPDNALASNQVTAFPPELFFVLRSVQMLRGLAHGMGVDFSVAQAWEKHIGNLLDSNHN 434          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: D8LK44_ECTSI (ABC transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK44_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 7.510e-126
Identity = 209/442 (47.29%), Postives = 289/442 (65.38%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELRCAITL----NGPSHERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAVPAVTVPRPRLASRRILCMTYLEGMPLSSLVSPTGFSRKLFARK--GRKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQ-------------------MRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAW 1709
            RA +FWGR+  IY+SYK ++ +CA+ L    N    E KR+  W  +HELNS+RML LCLDLRGFYLK+GQFLGTRHDFMP  +  KL  L D VP M A+   +++   L    E+LFS L+L  PIGSASISQVH G +  TGEKVAVKVQ+P AER+MM DL NL+ LA FL K E+ FD++S ++E+  QI  EF+F  E+  M+ +  SL E    + +P  R +++R+L M+YLEG  L+ L    G  R   ARK  G+ +L  LADAWG+M+FEEG FNADPHPGNIL+MP+                   +R+GLLDWG TK +  + ++K+A L+L++      +I   F  LG+++ +PDD +SI +LA  MF+T+ + G+ ++PF + N L  NSV  +P +L+F+LR+V + RG++  +GV+FSLA  W
Sbjct:   48 RAARFWGRSATIYLSYKKMQAKCALELPRVANLEERELKRKEWWDGIHELNSDRMLKLCLDLRGFYLKSGQFLGTRHDFMPKIFLRKLGKLHDDVPPMAASHVSKVLARELDVPAEELFSSLNLTHPIGSASISQVHRGVIRETGEKVAVKVQYPGAERVMMSDLRNLKILAWFLQKFELNFDILSSLKELSRQIKGEFDFRSEATTMDRMHESLGEHSRRINLPTSRSSTKRVLIMSYLEGESLAQL-KRGGKERFNAARKRIGKSLLHELADAWGFMIFEEGLFNADPHPGNILIMPEEQVGPIKRGFGLLGLRTPKLRIGLLDWGQTKELGRQDREKVANLILAVSSHASPDIVRCFNGLGVKLSNPDDADSIEKLALVMFDTRTIKGLDFNPFSDNNVLKLNSVLEYPQDLYFILRTVLMFRGMAQSLGVEFSLADKW 488          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A835Z9N8_9STRA (ABC transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N8_9STRA)

HSP 1 Score: 384 bits (985), Expect = 1.280e-122
Identity = 215/454 (47.36%), Postives = 293/454 (64.54%), Query Frame = 3
Query:  441 KGGTRDRALQFWGRAGRIYVSYKLLELRCAITLNGPSHERKRERL----WAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAV---PAVTVPRPRLASRRILCMTYLEGMPLSSLV--SPTGFSRKLFARKGRKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQ--------------------MRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQ-RDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWE 1712
            +G  R R L+FWGRA  IY SYK  ++ CA+ +   + E +RE L    W E+H LNS+R+L+LCLDLRGFYLK+GQFLGTR DFMP  Y  KL  L D VP M   + + ++E  L   IE  F+ LDLEEP+GSASISQVH G L  + E VAVKVQ+P AER+MM DL NL  LA FL K E+ FD++S + E+  QI  EF+F  E+R M+ +  SL+  V     +TVP   +A++R+L M+++EG  L+S+       FS  L  R G ++LQ LADAWGYM+F EG FNAD HPGNI++MP+                    +R+GLLDWG  K + V+ + + A L++++  G+ R+EI  AF  LGI +E+PDD +SI +LA  MF+TK + G+ ++PF EGN L  NSV  +P +L+FVLR+  + RG++  + V+FSLA  WE
Sbjct:   23 EGARRFRGLRFWGRAMVIYFSYKKAQMYCALAVPLTADEEEREALKRATWDEVHALNSDRLLDLCLDLRGFYLKSGQFLGTRSDFMPPIYLEKLGRLHDAVPPMAPERVRAVVEGELHGPIEGHFTHLDLEEPLGSASISQVHKGVLIGSDEPVAVKVQYPGAERVMMSDLTNLSVLASFLQKFELNFDVLSSLRELSRQIKHEFDFTYEARVMDRMRLSLQNHVREGELITVPSSIMATKRLLVMSFVEGQSLASIKRGEHERFS-SLRRRIGARLLQTLADAWGYMIFGEGLFNADLHPGNIVIMPEGRAWGLTGLVLGLLGLNTPKLRVGLLDWGQVKELDVDSRTRFARLVIAISDGKGREEIVEAFKGLGIVLENPDDSDSIEKLALVMFDTKPIAGLNFNPFSEGNVLKLNSVKQYPQDLYFVLRAALMFRGMAQSLKVEFSLADIWE 475          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A7S4DCV0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCV0_HETAK)

HSP 1 Score: 369 bits (948), Expect = 6.200e-116
Identity = 201/449 (44.77%), Postives = 285/449 (63.47%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELRCAITLNGPSHERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEA-VPAVTVPRPRLASRRILCMTYLEGMPLSSLV--------SPTGFSRKLFARKGR-----------KILQNLADAWGYMMFEEGFFNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVI-YSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWEGRVTEVVDRH 1742
            RA  FW  A RIY+SYK L+ R        +   +++ L+  LHE+N+++MLNLCL+L+GFYLK+GQ+ GTRHDFMP  Y  +L  L DQVP MPAA+ K ++E  L + +  +F  LDL  P+G+AS+SQVH G L  TGEKVAVKVQ+P A+ MM+ DL+NLR+   FL + EI  DLV+P+ E+  Q+  EF+F  E+  M+ I  ++++A +  + VP+   A  ++L M++LEG+PLS           +P G +  L  R+ R           ++L  LA AWGYM+F+EG FN DPHPGN+LLMP  R+GLLDWG TK +   +Q K+A  +L++R G   E+   F  LG EV++P D  SI ++   MF+T+++ G    +PF E + L  N VT  P +++FVLR++Q+ RGLS  +GV+FSLA AW     EVV  H
Sbjct:  110 RAYHFWSGALRIYLSYKALQARTVF-----AGAARKQELFDALHEVNAKKMLNLCLELQGFYLKSGQYFGTRHDFMPRAYLRELSQLHDQVPPMPAAKVKAIVERELCAPLGSVFRSLDLSAPVGAASLSQVHVGFLKRTGEKVAVKVQYPHAKEMMVSDLSNLRKAFSFLQRYEINQDLVTPILELEKQLDNEFDFRREAGAMDRICLAMQKARMRKIAVPKSVFAKPQLLIMSFLEGVPLSRFADEHALMGDTPEGLAASLDPRRPRVSGRVGKVVAARMLNILAKAWGYMIFKEGLFNGDPHPGNLLLMPGRRIGLLDWGQTKVIEPGLQYKIAQTILAMRGGADAEVVRWFFALGFEVQNPGDHASIVKMVRGMFDTREILGKDDLNPFAEASLLKLNPVTQIPEDIYFVLRAIQMFRGLSTKVGVRFSLAEAWAPYAREVVAAH 553          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A0G4F3L2_VITBC (Protein kinase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F3L2_VITBC)

HSP 1 Score: 372 bits (954), Expect = 8.660e-116
Identity = 202/460 (43.91%), Postives = 292/460 (63.48%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELRCAI----TLNGPSHERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSS---KIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAVPAVTVPRPRLASRRILCMTYLEGMPLSSL----VSPTGFSRKLFARKGRKILQNL----ADAWGYMMF-EEGFFNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWEGRVTEVVDRHHDQAKRDARASLAVAP 1790
            R LQFW R G IY SYK+L+ + A+    + +  + +  R+  W+  HE NS+R+L+LCL LRGFYLK+GQFLGTRHD  P  Y  KL  L D+VP M A +A++++E  L       + LF+  DL +PIGSAS+SQVH   L  TGEKVAVKVQ+P A R+M  D+ NL  LA++L + E+KFDLV+P++E+++Q+  EF+F  E+ +M+++   L   V  V VP+PRLA++++L M++L+G+ ++ L     S     R+L  R  +++L+ +    ADAWG M+F ++G  +ADPHPGN L+MP+  LGLLDWG  K +   +Q++LA+ +L L+  QRD IA    DLGI VEDP +  ++  +A SMF+T+ + GV ++ F     L  N+V  FP +LFFVLRS QLLRGLS G+ +  +L   W         R   + KR    S+ V P
Sbjct:   87 RLLQFWMRVGVIYGSYKILQAQSALLPLWSPDEANRQHTRDTWWSAQHEKNSDRLLDLCLSLRGFYLKSGQFLGTRHDICPPPYIRKLSTLHDRVPPMSAKRARKVVEQELKKLQLDFDQLFASFDLTKPIGSASLSQVHEAKLRKTGEKVAVKVQYPGARRLMAADITNLSILARYLQRFELKFDLVNPLKELKSQLLREFDFTQEASHMQALGPLLHRRVRGVKVPQPRLATKKLLIMSFLDGVQITRLREVAESNNNAVRRLSPRMQQRLLRRITMRIADAWGVMIFSQDGLHHADPHPGNFLIMPRGHLGLLDWGQVKALDQPLQRRLASFVLDLKSRQRDRIAQGLLDLGIHVEDPSNNATLERMAVSMFDTRKMPGVCFNIFSPDYTLKSNAVLGFPQDLFFVLRSCQLLRGLSTGLSIDLALCDRWAPHAK----RFLREQKRQGAESIQVPP 542          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: H6WB89_VAULI (ABC transporter-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB89_VAULI)

HSP 1 Score: 360 bits (923), Expect = 1.460e-111
Identity = 219/564 (38.83%), Postives = 324/564 (57.45%), Query Frame = 3
Query:  111 FSLLLLCMCRVAVASTHGSSSEHNFAGSAGLVLGRLVHNLNVSRQQFRHRLLNAVPSGGIDGKHAFREAGKVVGEGVGLVCRISHEASEGMLHVLSSVTRGGVKDDEGYVKGGTRDRALQFWGRAGRIYVSYKLLELRCAITLN-GPSHERK--RERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAVPAVTVPRPRLASRRILCMTYLEGMPLSSLV-SPTGFSRKLFARKGRKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQMR--------------------LGLLDWGNTKRVSVEMQQKLATLMLSL-RRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWEGRVTE 1727
            F+L L  +  V++    GS  E N      +     +    +++ Q +   L   P GG+D  H+ R   K+         RI  +  + +  +    T+   K     + G T  R ++FW RA  IY SYK  +L C   +     HE++  R+  W E H+LNS+R+L LCLDLRGFYLK GQFLGTRHDFMP  Y  KL +L D VP+M  A+ +++++A L    E++F +L+LE+P+GSASISQVH G L      VAVKVQ+P AE+ M RDL+NL+ LA FL K E+ FD++S + E+  QI  EFNF  ES  ME +  SL      V+VP    A++++L M+++EG  L+S+  S     R L  R G ++L+ LA AWGYM+F+EG FNAD HPGNI++MP+ R                    +GLLDWG  K +    +++ A L+ ++  +  +DE+  AF  LGI++ DP++ +SI +LA  MF+ +++DG   +PF + N + +N +  +P +L+FVLR+  + RG+S  + V FSLA AW    T+
Sbjct:   79 FALCLTVLTCVSLKKEEGSFKEENL-----IFKEETLPIPKLTKIQGKDIHLPHFPLGGLDIWHSLRRR-KMARR------RIRLDQDDVIKVLTPKETQKKAKKTSASLMGKTPFRGVKFWLRAANIYFSYKKAQLYCNFFIPLVDEHEKEELRKITWQETHDLNSDRLLALCLDLRGFYLKTGQFLGTRHDFMPQVYLKKLGMLHDDVPAMSPAEVRKVMKAELGKNWEEIFEELNLEQPLGSASISQVHRGVLKENKSPVAVKVQYPGAEKTMTRDLSNLKVLASFLQKFELDFDVLSSIRELSRQIKYEFNFENESSVMERMKLSLANHSNIVSVPTSINATKKVLIMSFIEGQSLASIRRSEKERFRNLRKRIGGRLLKTLAGAWGYMIFQEGLFNADLHPGNIVIMPEGRAWGPVGLVLGLVGLNTPALSVGLLDWGQVKELDEGSRERFARLVCAIANKKSQDEVVEAFKGLGIKIADPNNSDSIEKLALVMFDARNIDGANLNPFSQDNIMKQNRIKQYPQDLYFVLRAAIMFRGMSESLKVPFSLANAWAPYATK 630          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A0G4I1F9_9ALVE (ABC1 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I1F9_9ALVE)

HSP 1 Score: 357 bits (917), Expect = 1.410e-107
Identity = 203/464 (43.75%), Postives = 288/464 (62.07%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELRC---AITLNGPSH-ERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWST------------GEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEA-----VPAVTVPRPRLASRRILCMTYLEGMPLSSL----------------------VSPTGFSRKLFARKGRKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETK-DVDG--VIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWE 1712
            R L FW R+ RIY SYKLL+ +C   ++T   P   + +  + W + HELNS+RML+LCL L+GF++K+GQFLG+R DFMP  Y  KL  LQD VP M A   KELIE  L   + ++F +L+LE  +GSASI+QVH G L  +            GE VAVKVQFP A+R M+ DL NL+ LA +L + E+KFDLV+P++E++ Q+  EF+F  E+  M  +   L++A     V  V VPRP   + ++L M++L+G+PL+ +                      +   G  +    R+ RK L+ +ADAWG M+F EG FN DPHPGN+L+M + + GLLDWG TK+++   +  LA   L+LRRG R+EIA+AF  LGI V D +  ++   LA ++F+T  +VDG  +  +PF +G  L+  +VT+FP +LFFV RSVQL+RG+S  + V FSL+  WE
Sbjct:   72 RGLAFWARSSRIYFSYKLLQAKCLLASVTARDPVKLKEEMNKWWDDAHELNSDRMLDLCLTLKGFFIKSGQFLGSRGDFMPLPYLIKLATLQDDVPPMSAGATKELIERELGCSVSEIFEELNLEGFLGSASIAQVHKGRLIPSAFSGRGASSRGGGESVAVKVQFPGAKRRMLNDLMNLQILAHYLQRFELKFDLVNPLKELKKQVELEFDFRREADAMARVGTHLKDARGGGPVEGVEVPRPVAVTDKVLIMSFLDGLPLTKMRHAESQEKLLRLWGLSERQAKKMQARGIPQAAKKREVRKFLEKVADAWGKMIFGEGLFNGDPHPGNLLMMRERKAGLLDWGQTKQLTEAQRADLARFYLTLRRGTREEIASAFNGLGIRVSDEEAMDTKFRLACALFDTAAEVDGEKLEMNPFEKGALLNSAAVTTFPPDLFFVFRSVQLMRGISAALDVPFSLSGQWE 535          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A482RSK2_9ARCH (AarF/ABC1/UbiB kinase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSK2_9ARCH)

HSP 1 Score: 322 bits (826), Expect = 6.550e-99
Identity = 179/441 (40.59%), Postives = 273/441 (61.90%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELR----------------CAITLNGPSHERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAVPAVTVPRPRLASRRILCMTYLEGMPLSSLVS-------PTGFSRKLFARKGRKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQ-FSLAAAW 1709
            R  +FW R   IY+SYK+ +                   A+    PS +    + W +LHELNS+RM++LCL LRGFYLKAGQFLGTRHDFMP ++T KL  L DQVP M   + + +IE  L   I+  F+ LDL  P+GSASI+QVHAG   +TG+KVAVKVQ PE+E +M  DL NL  LA+FL + E+KFD++S ++E+R+QI  EF+F  E+ NM+ + +SL   +  + +P+    +R++L M+++EG  L+ +         PT   R +    G++IL  +++AWG  +F    F+ DPHPGNI +    ++GLLDWG  K +S ++ ++ A L+++L    + +I  AF DL ++V  P D  ++  +A +MF+T+  +  + +PF    A+ +NSV S P+E++F++R+VQL+RG+     +Q +SLA  W
Sbjct:   57 RNAEFWKRVMEIYLSYKVQQFNDMIHPVRNALDRNTSDAAVVDGMPSLDDN--KAWQQLHELNSQRMVDLCLSLRGFYLKAGQFLGTRHDFMPVEFTTKLSQLHDQVPPMSEDKVRHIIENELPGSIDSHFTSLDLATPVGSASIAQVHAGVWRATGQKVAVKVQNPESELLMKSDLHNLCALAEFLQRTELKFDILSALKELRSQIGNEFDFKREAFNMDFMFSSLAH-IKGIVIPQSIFRTRKLLVMSFIEGDNLTKVAHKDVLHAMPTLVKRTI----GKRILNVMSEAWGDQIFCLRLFHGDPHPGNICITRDSQIGLLDWGQVKSLSSQIARQYAQLIVALHSRDQQQIVQAFFDLEVKVSKPYDLRTVEAIAVTMFDTRTHENFVMNPFDPQAAIKQNSVLSMPTEIYFIVRAVQLMRGMCSAFKLQDYSLADKW 490          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A4D9CSV8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSV8_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.260e-91
Identity = 203/555 (36.58%), Postives = 284/555 (51.17%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELRCAITLNG--------PSHERKR-ERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKI-EDLFSDLDLEEPIGSASISQVHAGHLWST----------------------------------GEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAVPAVTVPRPRLASRRILCMTYLEGMPLSSLVSPTGFSRK-------------------------------------------------LFARKGRKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSL-----------------------------------RRGQRDEIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWEGRVTEVVDR 1739
            R L FW RA  IY  YKL +LR  ITL          PS  + R +  W  +H  NS+RML LCL LRGFYLKAGQFLGTR DFMP+ Y  KL  L D+VP +     +E++E  L  +  E++F DL+L+  +GSASI QVH G L                                     GE+VAVK+Q+P AE++M  DL+NL  L ++L K E+KFDL S   E++ QI++EF+F  E+ ++ ++   LEEA+P V+VPRP LA++R+L M++LEG  LS L       RK                                                 L  + G+ +++ +A+AWGYM++    F ADPHPGNILLM   RLG+LDWG TK++   ++ KLA L++++                                   RR  ++ I   F  LG+  E  DD E + ++ FSMF+T+ V     +PF + +AL  N+V SFP++L +VLR+VQ+LRG+S G+GV F L   W     E + R
Sbjct:  245 RMLDFWRRALDIYSHYKLSQLR--ITLQAAALPPSLPPSVRQARVQEWWDRVHARNSDRMLALCLSLRGFYLKAGQFLGTRPDFMPAPYILKLATLHDRVPPLSEEAVREVLEEELGGRPWEEVFLDLNLKTCVGSASICQVHEGRLRGLREEEVEEGKEGGGXXXEGRRRKEGXXXKGGLKYGGERVAVKIQYPNAEKVMRADLSNLHALCRYLKKVELKFDLTSMCTELQRQIAQEFDFRTEAASLRAVGPVLEEALPFVSVPRPFLATKRLLIMSFLEGTSLSRLEDGEVQRRKRQGGKEGGRVGKRRRWLTRVVTLGMAGREXXXXXXXXXXXXXXXXLGERLQKKIGQGLIEKMAEAWGYMLWHCDCFQADPHPGNILLMKNFRLGILDWGQTKKLDGPLKHKLARLLVAMHQAEREVGKXXXXXXXXXXXXXXXXXXXXXXXVCVRRRDQERIKREFYRLGVVTEREDDAEEVCKMVFSMFDTRYVPNFCGNPFDKDHALHANAVVSFPADLCYVLRTVQILRGMSGGLGVDFDLTQVWAPMAEEFLKR 797          
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Match: A0A1Y1HSN1_KLENI (Protein kinase superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSN1_KLENI)

HSP 1 Score: 305 bits (782), Expect = 6.160e-91
Identity = 184/447 (41.16%), Postives = 275/447 (61.52%), Query Frame = 3
Query:  459 RALQFWGRAGRIYVSYKLLELRCAITLNGPSHERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQYTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASISQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFDLVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAVPA--------VTVPR--PRLASRRILCMTYLEGMPLSSL--------VSPTGFSRKLFARKG-RKILQNLADAWGYMMFEEGFFNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRDEIA--NAFCDLGIEVEDPDDKESIRELAFSMFETK-DVDGVIYSPFMEGNALSKNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWEGRVTEVV 1733
            R L+FW R+  +Y SYK+ + R A+     S   +++ LW   HE+ ++R+ NLC+DL GF+LK+GQFL  + D +P  +  +L +LQD  P  P    K+ +EA L   ++++F +L  E PIGSAS++QVH G L     +VAVKVQ P +E +MM+DL N R  A FL K E+ FDL+S + E+  Q+  EF+F  E+ +M+ I  SL     +        V VPR  P L +R++L M +L+G+ ++ L        ++P G    L AR+  R+IL++L  A+G+M+  +GFF ADPHPGNI++    ++GLLD+G TKR+   ++ + A L+L+L   +RDE+A  +AF  LGI  E P D  S   +A  MF+T+   D    +PF + + + KN VT FP +LFFVLR+VQLLRGL+ GMG+ +S+A AW+    EV+
Sbjct:  144 RTLEFWQRSVVVYGSYKVCQARAALI----SDPEEKQALWDRQHEVAADRLYNLCVDLGGFFLKSGQFLA-KPDLVPPAWVKRLAVLQDAAPQTPFEDVKKTLEAELGRPVDEVFEELQ-ERPIGSASVAQVHKGRLREGRREVAVKVQHPGSEALMMQDLRNHRNFAAFLQKFELPFDLLSVLAELEHQVQYEFDFQHEAESMDVIGRSLAVGPKSGGKKWESPVLVPRSIPGLVTRQVLVMDFLDGVQITRLQDEMKKRRINPDG----LVARRAKRRILEDLTAAYGHMILRDGFFQADPHPGNIIVCKGGKVGLLDYGQTKRLPERLRLQYARLVLALN--ERDELAITDAFRALGIRTEKPPDVHSFSNMAGLMFDTRMPKDRESLNPFTDESEIQKNPVTEFPKDLFFVLRTVQLLRGLTMGMGIDWSVAEAWKPLADEVL 578          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_989.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNM3_9STRA1.730e-15957.08ABC transporter-like protein n=1 Tax=Tribonema min... [more]
D8LK44_ECTSI7.510e-12647.29ABC transporter-like protein n=1 Tax=Ectocarpus si... [more]
A0A835Z9N8_9STRA1.280e-12247.36ABC transporter-like protein n=1 Tax=Tribonema min... [more]
A0A7S4DCV0_HETAK6.200e-11644.77Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4F3L2_VITBC8.660e-11643.91Protein kinase domain-containing protein n=1 Tax=V... [more]
H6WB89_VAULI1.460e-11138.83ABC transporter-like protein n=1 Tax=Vaucheria lit... [more]
A0A0G4I1F9_9ALVE1.410e-10743.75ABC1 domain-containing protein n=1 Tax=Chromera ve... [more]
A0A482RSK2_9ARCH6.550e-9940.59AarF/ABC1/UbiB kinase family protein n=1 Tax=archa... [more]
A0A4D9CSV8_9STRA1.260e-9136.58Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Y1HSN1_KLENI6.160e-9141.16Protein kinase superfamily protein n=1 Tax=Klebsor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_989contigC-australica_Contig_989:3778..8999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK44
PFAMsABC1
Model size2105
Max annot lvl2759|Eukaryota
KEGG koko:K01177,ko:K08869
KEGG ReactionR02112,R11262
KEGG Pathwayko00500,map00500
Hectar predicted targeting categorysignal peptide
Exons22
Evalue2.63e-128
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
EC3.2.1.2
Descriptionregulation of tocopherol cyclase activity
Cds size1725
COG categoryE
CAZyGH14
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_989.3.1prot_C-australica_Contig_989.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_989 3873..8634 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.0876362-UTR-C-australica_Contig_989:3777..38721682588855.0876362-UTR-C-australica_Contig_989:3777..3872Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 3778..3872 +
1682588855.3171608-UTR-C-australica_Contig_989:8634..88561682588855.3171608-UTR-C-australica_Contig_989:8634..8856Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 8635..8856 +
1682588855.3265543-UTR-C-australica_Contig_989:8936..89991682588855.3265543-UTR-C-australica_Contig_989:8936..8999Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 8937..8999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.099233-CDS-C-australica_Contig_989:3872..39431682588855.099233-CDS-C-australica_Contig_989:3872..3943Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 3873..3943 +
1682588855.1092792-CDS-C-australica_Contig_989:4002..40951682588855.1092792-CDS-C-australica_Contig_989:4002..4095Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 4003..4095 +
1682588855.1188116-CDS-C-australica_Contig_989:4202..43111682588855.1188116-CDS-C-australica_Contig_989:4202..4311Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 4203..4311 +
1682588855.12836-CDS-C-australica_Contig_989:4491..45991682588855.12836-CDS-C-australica_Contig_989:4491..4599Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 4492..4599 +
1682588855.1378577-CDS-C-australica_Contig_989:4819..48861682588855.1378577-CDS-C-australica_Contig_989:4819..4886Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 4820..4886 +
1682588855.1474862-CDS-C-australica_Contig_989:4972..50661682588855.1474862-CDS-C-australica_Contig_989:4972..5066Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 4973..5066 +
1682588855.1574283-CDS-C-australica_Contig_989:5336..54271682588855.1574283-CDS-C-australica_Contig_989:5336..5427Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 5337..5427 +
1682588855.169973-CDS-C-australica_Contig_989:5517..55771682588855.169973-CDS-C-australica_Contig_989:5517..5577Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 5518..5577 +
1682588855.1797764-CDS-C-australica_Contig_989:5673..57361682588855.1797764-CDS-C-australica_Contig_989:5673..5736Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 5674..5736 +
1682588855.1889608-CDS-C-australica_Contig_989:5916..59521682588855.1889608-CDS-C-australica_Contig_989:5916..5952Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 5917..5952 +
1682588855.1979072-CDS-C-australica_Contig_989:6050..61611682588855.1979072-CDS-C-australica_Contig_989:6050..6161Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 6051..6161 +
1682588855.2073386-CDS-C-australica_Contig_989:6319..63581682588855.2073386-CDS-C-australica_Contig_989:6319..6358Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 6320..6358 +
1682588855.217385-CDS-C-australica_Contig_989:6577..66631682588855.217385-CDS-C-australica_Contig_989:6577..6663Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 6578..6663 +
1682588855.228296-CDS-C-australica_Contig_989:6788..69021682588855.228296-CDS-C-australica_Contig_989:6788..6902Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 6789..6902 +
1682588855.2428286-CDS-C-australica_Contig_989:7016..70831682588855.2428286-CDS-C-australica_Contig_989:7016..7083Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 7017..7083 +
1682588855.255376-CDS-C-australica_Contig_989:7281..73071682588855.255376-CDS-C-australica_Contig_989:7281..7307Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 7282..7307 +
1682588855.2713761-CDS-C-australica_Contig_989:7399..74481682588855.2713761-CDS-C-australica_Contig_989:7399..7448Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 7400..7448 +
1682588855.2803514-CDS-C-australica_Contig_989:7642..77441682588855.2803514-CDS-C-australica_Contig_989:7642..7744Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 7643..7744 +
1682588855.2889102-CDS-C-australica_Contig_989:7887..79501682588855.2889102-CDS-C-australica_Contig_989:7887..7950Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 7888..7950 +
1682588855.2975576-CDS-C-australica_Contig_989:8112..82301682588855.2975576-CDS-C-australica_Contig_989:8112..8230Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 8113..8230 +
1682588855.3066669-CDS-C-australica_Contig_989:8476..86341682588855.3066669-CDS-C-australica_Contig_989:8476..8634Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 8477..8634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_989.3.1

>prot_C-australica_Contig_989.3.1 ID=prot_C-australica_Contig_989.3.1|Name=mRNA_C-australica_Contig_989.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=575bp
MLTPPFSLLLLCMCRVAVASTHGSSSEHNFAGSAGLVLGRLVHNLNVSRQ
QFRHRLLNAVPSGGIDGKHAFREAGKVVGEGVGLVCRISHEASEGMLHVL
SSVTRGGVKDDEGYVKGGTRDRALQFWGRAGRIYVSYKLLELRCAITLNG
PSHERKRERLWAELHELNSERMLNLCLDLRGFYLKAGQFLGTRHDFMPSQ
YTGKLMLLQDQVPSMPAAQAKELIEAGLSSKIEDLFSDLDLEEPIGSASI
SQVHAGHLWSTGEKVAVKVQFPEAERMMMRDLANLRQLAKFLSKREIKFD
LVSPVEEMRAQISEEFNFLLESRNMESIANSLEEAVPAVTVPRPRLASRR
ILCMTYLEGMPLSSLVSPTGFSRKLFARKGRKILQNLADAWGYMMFEEGF
FNADPHPGNILLMPQMRLGLLDWGNTKRVSVEMQQKLATLMLSLRRGQRD
EIANAFCDLGIEVEDPDDKESIRELAFSMFETKDVDGVIYSPFMEGNALS
KNSVTSFPSELFFVLRSVQLLRGLSHGMGVQFSLAAAWEGRVTEVVDRHH
DQAKRDARASLAVAPGVRDSRRWH*
back to top

mRNA from alignment at C-australica_Contig_989:3778..8999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_989.3.1 ID=mRNA_C-australica_Contig_989.3.1|Name=mRNA_C-australica_Contig_989.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=5222bp|location=Sequence derived from alignment at C-australica_Contig_989:3778..8999+ (Chrysoparadoxa australica CS_1217)
GCGTCTGTGACACGGGGTCTATCAATCGCTCACTCTCCTTGTTGTCTCTC CACTCTCCCCGACTTGGTTAATTAAGTAAGCGAAAGGGGCAGAGCATGCT CACTCCCCCGTTTTCTCTCTTGCTCCTCTGCATGTGCAGGGTTGCGGTAG CTTCTACACATGGCAGGTGTGTTAGGACTCACTCTCTTCTCACTTATTCC CTCTGACACGCACCCCCTTGTCCAGTTCAAGCGAGCACAACTTTGCTGGG TCTGCGGGACTTGTATTGGGAAGGCTGGTGCACAATTTAAACGTCTCGAG GCAACAGTTTCGGCACAGGTCAGCTTATCCTAATCTTATATCCATACCCC TTGCAGTCTCTCGCACCCCTTCCCTCTCTCTCATCCCTCATAAAATCCCT TTGTCCTTTGGCTGTGTTGAAGCAGACTGCTTAATGCTGTCCCTAGCGGT GGCATTGATGGTAAGCATGCTTTCAGGGAAGCTGGCAAGGTCGTAGGGGA GGGTGTTGGACTGGTTTGCCGGATCAGCCATGAGGTAATTAATGCTCAAC ACTTATATCATGAACATCTATAAGTGACAAATCTATGATGGGTCAGTTGA AGCCATTTGATGTTACTTCATGGAAAAAACCTCTGCGGTGCTGGCATTTT GGCTGCTGGTTATGATGCAGAGGTTACAGCGCTAAGATCCCGTGCCACAC CCTTTCTATTAAAGGCAAGTGAGGGTATGCTACATGTACTGAGCAGCGTC ACACGAGGGGGTGTGAAAGATGATGAGGGTTATGTCAAGGGTGGAACCAG AGACAGGGCCCTACAGTTCTGGGTGAGCTGCTCAGAAAAAGACCAACTAG CCATGATTTGCTCCCCCAGTCAAACCATTACTTCACTGTATCTCATGAAC CAGCGCTCTCACTCTCATCTCAGCTTCCCACTGCACCCCCCTCTTCACTC ACCTTTCATTTTTTCTCTTTTTTTGTTCTTGATTACTCCTCTTGCCTCTG CTACTGTGGTCGTAAATCACTGCTCTTATTTTACACACTCAGGGCCGAGC TGGTCGGATTTACGTGTCTTACAAACTGTTGGAGTTAAGATGTGCAATAA CACTCAACGGTAAGTCAACTAACCGAATCATTCGTTTTCTCTGATTGTCT GATTGACTGATTTACTCACTTGCTGGCTACTTGAATGAATGACAGGACCC TCACACGAAAGAAAGCGTGAGAGGCTGTGGGCAGAATTGCATGAGCTCAA CAGTGAACGAATGCTTAATCTATGCCTAGATCTCAGAGGGTAGGGAAACA AACACATAGGCGCAAATTAAAACCATTAACTGGCTGAGTGCTATGAAGCT TGAATGACTAACTGCTAAATGGTACTACCTACTAACTTAGAGTCCTTGAA CTGAAATAACTCACAAGTGGCTCTACCTCTCATTGCTTTGCTTACCTTTG CTACCTCCAACACAGAAATGGATCAGTCCCTCCACTGGCATTCCCACAGT ATTAAGACATCACTCACTCACTCACTCACTCACTCGTTTACATTTGGACG ACACCTCAGGTTCTACCTCAAAGCTGGCCAATTTCTTGGCACTAGGCATG ATTTCATGCCATCACAGTATACAGGGAAACTAATGCTGTTACAGGATCAA GTGAGTTGGTTTATTTCGTTTATTGGTGCAGCATCACGCTAAAGGCAGTG GCATTCCCCATTCACACTTAACCTAATTCTGCTTTGAAAGGTACCATCAA TGCCAGCAGCCCAGGCTAAGGAGCTTATCGAAGCAGGGCTCAGCTCAAAG GTACTGGTTTTATCCACCCCTGAGCCCTTATGTTGCTCCCTGATTGACAC AACAAACCTCTACGCCTCCTTATGCTACCTCTCATCTATGCCTTAGATTG AAGATCTATTTTCGGATCTGGACTTAGAGGAACCTATTGGTAGTGCTTCC ATCAGTCAGGTGAAGCATGCAACCAAGATCGACCAAGATCTATGTACACT CCTGGACTTGACACATAGTACAAATTCGCTTTTGAGGAAGGGTTCGAACG CAACTTATGGCATCTCTCACTGAGTTGCTCTTGCACATCTCTCACTGGGT CGCTCTTGCACGCCTCTCCTCTCTCTCTCTCTCTAACAGGTGCATGCAGG ACATTTGTGGAGTACAGGGGAGAAGGTGAAGTCTAGGCAGTGTTATCAGT TATCATGCTCTCATACAGCTCTACTTTTTCTTACAAATGTTCTCAAGTCC ATTGTGCATGTCCTTTGTAACAGGTGGCTGTAAAAGTGCAGTTTCCAGAG GCGGAGAGAATGATGATGAGGGATCTTGCCAATTTACGGCAGCTTGCAAA GTTCCTCTCAAAGAGAGAGATTAAGTTTGACCTGGTAAACTCAAGTTGTT TGCTGTGTGATCTAATGATCTCTTTTTGTGCTAGGTCGACTCTTTTCTAT ACTCTGTACCCTGACTTGACTTGACTTCTAGTGAGGCTAGGCAGCTTGTG CTTTGGGACCACCTCCCTTTCTCACTTCCACCTTGCTGGTAGGTGAGTCC TGTGGAGGAGATGAGAGCTCAAATATCGGAGGTAGGCTAGGCTCTCCATG ACCAGGCTTTTAAATCAGACCTCCCTTTTTAGCTGCCGACCTCACATAGC TTCTCATAGCTTCCCATAGCTCATGTGACGCTTACTTCAGATATGGTGTG GCAAGCTGTGGAAGCTTTTTGTGAGACCCTGCATAGCCTCTGATCCAATT GATCCAATTGATCCAACCATTCATTCTTCATTGCTCTTCTGTACATGCAG GAGTTTAATTTTCTTTTGGAATCACGCAATATGGAAAGCATAGCAAACTC TTTGGAGGAAGCTGTTCCGGCAGTTACGGTGCCAAGGTAACCATTTTTGT ATCGCTTTTGCTTAACCAAACAGCAAGCAAGAACGTTCCTTTATTCTAGC GGGGCTTCCTCTCCTTCAGTCAGTTGTCATTCTTACTGGCTCTCACTGGC TCTCCCTTCAGGCCTCGCCTGGCCAGTCGGAGGATACTATGTATGACATA TTTAGAGGGGATGCCACTTTCAAGTCTGGTGTCGCCTACAGGTTTCTCTC GAAAGCTGTTTGCCAGAAAAGGGAGGTAAGTGCTGAATGAGCTGCATGCT CTCACTCATCTGTATCTTTGAATGAGAACTTATGGTTGTGCTCTCTCTCA TCACCTGCATCCCATTGCGGCCGTACTGTACTGTCTCAGGAAAATTCTCC AGAATTTAGCGGATGCCTGGGGCTATATGATGTTTGAGGAAGGTTTCTTT AATGCGGTAAGTTATGCTGCTGCTGCTGCAATTCGTGACTGTGACCTTGA CTTCACAACTTGATTAAGAATACTAACTAATGCTCGTTAACGAATGCTTG GCTTGATCTCTTGCTTGAGTCTTCCTTCCCCTGCCTCTGGCATCTCATAC CACTGTAGTACTGTGTGTTTGACCACATTGTCGCTGTTTTTCCCGTTCCC ACAGGATCCACACCCTGGCAACATCCTTTTGTGAGTTATTAGTTGGCTCA CTCAGTGCCCCTCTCTAACTGCAAGGTCCCATAACCTGAGCTAACCACCC TGCATCCTGCACTCTGTCTCAGAATGCCTCAGATGAGGCTTGGCCTCCTT GACTGGGGCAACACCAAGCGGGTAAGCAGTTAGATTTGCAGGTTATGACC CATAAGCTAGTAGTACCAGTAGCAGCTGGCGGCTTGAGGGGCATCTTGAT AAGGGAAGGGTTCCGCCTATGCCTCCTTCTTGCTCCTCGATTGTTTGCTC TGCTAGCTCTGTTCGCCTCAACTCTCATGCTCTCTCTCATCTTTGCCTAC CTTCTACCTCCTTAGGTGAGCGTTGAAATGCAACAGAAGCTTGCCACACT CATGTTATCGCTGAGAAGGGGCCAGCGTGATGAAATAGCCAACGCATTCT GTGATCTAGGAATAGAGGTGACTGTGGCTGACTGCTCCAAATCGCATGGT TACGTCCTTTCCTTCCTGGTCTCACTCTGCACTGCACTGCACTGCACTGC ACTTCACTACTCTAGCTCATTGGTTGCTCCACTCATGCGCTTGCATCTAT CTCATCTCAGGTGGAGGATCCTGATGACAAAGAGTCCATAAGAGAGCTGG CCTTCTCCATGTTTGAAACAAAAGTAAGGGTTAGGCACTGACTGTGGAAA GTGTGCGATGAGTAAGAGCTGTGGGGATGAGTGGGAGCATTATGAGAGAG TTGATGTTTGAAGTCTGAAATCATTTAAGCTCCTTGCCAGCCCTCTATGA CCCCAAGTAACAGTCCTCCATCCGTAATGTCACAGGATGTTGATGGAGTC ATCTACTCACCATTTATGGAAGGGAATGCGTTGAGCAAGAATTCCGTCAC ATCCTTCCCTTCAGAATTATTCTTTGTATTGAGATCCGTCCAGTTGCTCC GAGGTAATGAGTGTGTGTATATATATCACTTCGCGACTTATCATAGATGA GTAGCAAGCAAGCTACATTAAATTGCTAAACACACACATATTAACATATT AAACTCTCACCAAGACATCCTTGCTGCATGCCTTGATTTGGTATGTCGCC CAATACCATGTATTCTTTGAGCTCTTACCCAGAGAAATCACTAAAGCACT CTGTCTCAACTGCACAATGCCCTTGCAATCTGCTGTCCTATTTCTTTAGG TCTGTCACATGGCATGGGGGTTCAGTTTTCACTGGCTGCTGCGTGGGAAG GGAGGGTCACGGAGGTTGTTGATAGACATCACGACCAAGCTAAGAGAGAT GCCAGAGCTTCCTTGGCAGTTGCTCCGGGTGTCAGGGATAGTAGACGGTG GCACTGAAGGTGTGCATACCACGGACGATTGCTCGCGTCTTTTCACGTTA GATATCAGTTTAACCAACAAAATAAAGAGTGAAACAAGATATTACACGGC AAGCCCCAGCCTGCCTGCCTTGCAGTCCAAGGAGGTGGTGTCGGGATGTG CGATTCAGATTCAAAACATACCAATGGGTGAATATTTCAGTAGTGGGAGA GCCAGTAGATACATGGCTATGCAGAGTGGGTGAGTCACAATACTCACTTT GCAGTACATTTCTTACCACATGCGTCTGTCTGTCTACCTAACTTACCGTT TTCACTCAGATGAAGGCCCCGCTGAGCTCGGCACCCATTGCCTCATGCAA CCTTGCAGCTCGTCCCTCCTTC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_989:3778..8999+

>mRNA_C-australica_Contig_989.3.1 ID=mRNA_C-australica_Contig_989.3.1|Name=mRNA_C-australica_Contig_989.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1725bp|location=Sequence derived from alignment at C-australica_Contig_989:3778..8999+ (Chrysoparadoxa australica CS_1217)
ATGCTCACTCCCCCGTTTTCTCTCTTGCTCCTCTGCATGTGCAGGGTTGC
GGTAGCTTCTACACATGGCAGTTCAAGCGAGCACAACTTTGCTGGGTCTG
CGGGACTTGTATTGGGAAGGCTGGTGCACAATTTAAACGTCTCGAGGCAA
CAGTTTCGGCACAGACTGCTTAATGCTGTCCCTAGCGGTGGCATTGATGG
TAAGCATGCTTTCAGGGAAGCTGGCAAGGTCGTAGGGGAGGGTGTTGGAC
TGGTTTGCCGGATCAGCCATGAGGCAAGTGAGGGTATGCTACATGTACTG
AGCAGCGTCACACGAGGGGGTGTGAAAGATGATGAGGGTTATGTCAAGGG
TGGAACCAGAGACAGGGCCCTACAGTTCTGGGGCCGAGCTGGTCGGATTT
ACGTGTCTTACAAACTGTTGGAGTTAAGATGTGCAATAACACTCAACGGA
CCCTCACACGAAAGAAAGCGTGAGAGGCTGTGGGCAGAATTGCATGAGCT
CAACAGTGAACGAATGCTTAATCTATGCCTAGATCTCAGAGGGTTCTACC
TCAAAGCTGGCCAATTTCTTGGCACTAGGCATGATTTCATGCCATCACAG
TATACAGGGAAACTAATGCTGTTACAGGATCAAGTACCATCAATGCCAGC
AGCCCAGGCTAAGGAGCTTATCGAAGCAGGGCTCAGCTCAAAGATTGAAG
ATCTATTTTCGGATCTGGACTTAGAGGAACCTATTGGTAGTGCTTCCATC
AGTCAGGTGCATGCAGGACATTTGTGGAGTACAGGGGAGAAGGTGGCTGT
AAAAGTGCAGTTTCCAGAGGCGGAGAGAATGATGATGAGGGATCTTGCCA
ATTTACGGCAGCTTGCAAAGTTCCTCTCAAAGAGAGAGATTAAGTTTGAC
CTGGTGAGTCCTGTGGAGGAGATGAGAGCTCAAATATCGGAGGAGTTTAA
TTTTCTTTTGGAATCACGCAATATGGAAAGCATAGCAAACTCTTTGGAGG
AAGCTGTTCCGGCAGTTACGGTGCCAAGGCCTCGCCTGGCCAGTCGGAGG
ATACTATGTATGACATATTTAGAGGGGATGCCACTTTCAAGTCTGGTGTC
GCCTACAGGTTTCTCTCGAAAGCTGTTTGCCAGAAAAGGGAGGAAAATTC
TCCAGAATTTAGCGGATGCCTGGGGCTATATGATGTTTGAGGAAGGTTTC
TTTAATGCGGATCCACACCCTGGCAACATCCTTTTAATGCCTCAGATGAG
GCTTGGCCTCCTTGACTGGGGCAACACCAAGCGGGTGAGCGTTGAAATGC
AACAGAAGCTTGCCACACTCATGTTATCGCTGAGAAGGGGCCAGCGTGAT
GAAATAGCCAACGCATTCTGTGATCTAGGAATAGAGGTGGAGGATCCTGA
TGACAAAGAGTCCATAAGAGAGCTGGCCTTCTCCATGTTTGAAACAAAAG
ATGTTGATGGAGTCATCTACTCACCATTTATGGAAGGGAATGCGTTGAGC
AAGAATTCCGTCACATCCTTCCCTTCAGAATTATTCTTTGTATTGAGATC
CGTCCAGTTGCTCCGAGGTCTGTCACATGGCATGGGGGTTCAGTTTTCAC
TGGCTGCTGCGTGGGAAGGGAGGGTCACGGAGGTTGTTGATAGACATCAC
GACCAAGCTAAGAGAGATGCCAGAGCTTCCTTGGCAGTTGCTCCGGGTGT
CAGGGATAGTAGACGGTGGCACTGA
back to top