mRNA_C-australica_Contig_988.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_988.4.1
Unique NamemRNA_C-australica_Contig_988.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: UPI00148A7567 (probable inactive tRNA-specific adenosine deaminase-like protein 3 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A7567)

HSP 1 Score: 57.4 bits (137), Expect = 7.270e-8
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:  133 SAEQYLCTGYHIYTTVEPCMMCAMALLHSRV 225
            SAEQYLCTGY +Y T EPC+MCAMAL+HSR+
Sbjct:  244 SAEQYLCTGYDLYATTEPCVMCAMALVHSRI 274
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BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A8K1FQ92_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQ92_PYTOL)

HSP 1 Score: 57.0 bits (136), Expect = 1.040e-7
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   97 SPSAXXXXTGAPSAEQYLCTGYHIYTTVEPCMMCAMALLHSR 222
            S SA     G  SAE YLCTGY +Y  VEPC+MCAMAL+HSR
Sbjct:  248 SASAVTLSNGQASAESYLCTGYDVYVDVEPCVMCAMALIHSR 289
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BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A0H5BZ50_CYBJN (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) TaxID=983966 RepID=A0A0H5BZ50_CYBJN)

HSP 1 Score: 55.5 bits (132), Expect = 2.300e-7
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  130 PSAEQYLCTGYHIYTTVEPCMMCAMALLHSRVA 228
            PS   YLC  YH+YTT EPC MCAMAL+HSR+A
Sbjct:  169 PSDHHYLCNNYHVYTTHEPCTMCAMALIHSRIA 201
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BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A1E4S8G3_CYBJN (Cytidine deaminase-like protein n=1 Tax=Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) TaxID=983966 RepID=A0A1E4S8G3_CYBJN)

HSP 1 Score: 55.5 bits (132), Expect = 3.540e-7
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  130 PSAEQYLCTGYHIYTTVEPCMMCAMALLHSRVA 228
            PS   YLC  YH+YTT EPC MCAMAL+HSR+A
Sbjct:  227 PSDHHYLCNNYHVYTTHEPCTMCAMALIHSRIA 259
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BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A0B6Y6V9_9EUPU (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Y6V9_9EUPU)

HSP 1 Score: 55.5 bits (132), Expect = 3.560e-7
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  127 APSAEQYLCTGYHIYTTVEPCMMCAMALLHSRV 225
            AP+AE YLCTGY +Y T EPC+MC+MAL+HSR+
Sbjct:  237 APTAEPYLCTGYDLYLTQEPCVMCSMALVHSRI 269
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BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A7S3ZUQ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUQ9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.580e-7
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  124 GAPSAEQYLCTGYHIYTTVEPCMMCAMALLHSRV 225
            GAP +E YLCTG  +Y T EPC+MCAMALLHSRV
Sbjct:  246 GAPPSEAYLCTGMDVYMTDEPCVMCAMALLHSRV 279
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BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A7J5Y0E0_DISMA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5Y0E0_DISMA)

HSP 1 Score: 52.8 bits (125), Expect = 8.880e-7
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   85 ASTSSPSAXXXXTGAPSAEQYLCTGYHIYTTVEPCMMCAMALLHSRV 225
            A T +P A       PS+  Y+CTGY +Y T EPC+MCAMAL+HSR+
Sbjct:   56 ACTFTPPASDTFQSTPSSLPYICTGYDLYVTREPCIMCAMALVHSRI 102
[Close]
BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A1E3P110_WICAA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3P110_WICAA)

HSP 1 Score: 54.3 bits (129), Expect = 9.110e-7
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  136 AEQYLCTGYHIYTTVEPCMMCAMALLHSRVA 228
            ++ YLC GYH+YTT EPC MCAMAL+HSRV+
Sbjct:  227 SQHYLCYGYHVYTTHEPCSMCAMALIHSRVS 257
[Close]
BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A4P9ZTZ3_9FUNG (Cytidine deaminase-like protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZTZ3_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 1.570e-6
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:  145 YLCTGYHIYTTVEPCMMCAMALLHSRV 225
            YLCTGY +YTT+EPC+MC+MAL HSR+
Sbjct:   60 YLCTGYDVYTTMEPCVMCSMALTHSRI 86
[Close]
BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Match: A0A224XGF7_9HEMI (Putative subunit of trna-specific adenosine-34 deaminase (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XGF7_9HEMI)

HSP 1 Score: 53.5 bits (127), Expect = 1.700e-6
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  139 EQYLCTGYHIYTTVEPCMMCAMALLHSRV 225
            + YLCTGY++YTT EPC MCAMAL+HSRV
Sbjct:  236 DPYLCTGYYVYTTHEPCTMCAMALIHSRV 264
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_988.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00148A75677.270e-877.42probable inactive tRNA-specific adenosine deaminas... [more]
A0A8K1FQ92_PYTOL1.040e-764.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0H5BZ50_CYBJN2.300e-769.70CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1E4S8G3_CYBJN3.540e-769.70Cytidine deaminase-like protein n=1 Tax=Cyberlindn... [more]
A0A0B6Y6V9_9EUPU3.560e-769.70CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S3ZUQ9_9STRA3.580e-773.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7J5Y0E0_DISMA8.880e-753.19CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1E3P110_WICAA9.110e-770.97CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A4P9ZTZ3_9FUNG1.570e-674.07Cytidine deaminase-like protein (Fragment) n=1 Tax... [more]
A0A224XGF7_9HEMI1.700e-675.86Putative subunit of trna-specific adenosine-34 dea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_988contigC-australica_Contig_988:16804..17273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7W1
Preferred nameADAT3
PFAMsSET,dCMP_cyt_deam_1
Model size233
Max annot lvl2759|Eukaryota
KEGG koko:K07117,ko:K15442
Hectar predicted targeting categoryother localisation
GOsGO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494
Exons2
Evalue2.95e-07
EggNOG OGsCOG0590@1|root,KOG2771@2759|Eukaryota
DescriptionRNA modification
Cds size231
COG categoryFJ
BRITEko00000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588854.1786914-CDS-C-australica_Contig_988:16803..168661682588854.1786914-CDS-C-australica_Contig_988:16803..16866Chrysoparadoxa australica CS_1217CDSC-australica_Contig_988 16804..16866 +
1682588854.1882658-CDS-C-australica_Contig_988:17103..172711682588854.1882658-CDS-C-australica_Contig_988:17103..17271Chrysoparadoxa australica CS_1217CDSC-australica_Contig_988 17104..17271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_988.4.1prot_C-australica_Contig_988.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_988 16804..17271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_988.4.1

>prot_C-australica_Contig_988.4.1 ID=prot_C-australica_Contig_988.4.1|Name=mRNA_C-australica_Contig_988.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=77bp
AKRPRKSDKRCQEEDEGAAVLATARSVTASTSSPSAATSATGAPSAEQYL
CTGYHIYTTVEPCMMCAMALLHSRVAM
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mRNA from alignment at C-australica_Contig_988:16804..17273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_988.4.1 ID=mRNA_C-australica_Contig_988.4.1|Name=mRNA_C-australica_Contig_988.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=470bp|location=Sequence derived from alignment at C-australica_Contig_988:16804..17273+ (Chrysoparadoxa australica CS_1217)
GCTAAGAGACCGAGAAAAAGCGATAAGAGATGTCAGGAAGAGGATGAGGG
AGCTGCTGTTCTGGTCTGTGCTACACTCATCACACCCAGCTGACCGTTAA
CTGCAGGAATGAAATAGGCTTGCTTGCTCATACTACTCACGACGAATGCT
ATCAGCTAGATATATATCTCACCTGGCTTTTTTCCAAGCATCTGGATAGT
TAACAGATAATAACCTATCTTCTCCCACCCTTGATGCCACACGCCCCTTG
CACCCCTTCTGCTCTGTGCTATCCTCTCACTCTTATACTCTCCCACTCAG
GCCACAGCTCGGAGTGTCACTGCAAGTACCTCAAGCCCCAGCGCTGCCAC
CTCAGCAACAGGGGCCCCGAGTGCTGAGCAATATCTTTGCACTGGGTACC
ATATATACACCACCGTGGAGCCGTGTATGATGTGTGCTATGGCCTTGCTC
CACAGCCGAGTAGCCATGGT
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Coding sequence (CDS) from alignment at C-australica_Contig_988:16804..17273+

>mRNA_C-australica_Contig_988.4.1 ID=mRNA_C-australica_Contig_988.4.1|Name=mRNA_C-australica_Contig_988.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=231bp|location=Sequence derived from alignment at C-australica_Contig_988:16804..17273+ (Chrysoparadoxa australica CS_1217)
GCTAAGAGACCGAGAAAAAGCGATAAGAGATGTCAGGAAGAGGATGAGGG
AGCTGCTGTTCTGGCCACAGCTCGGAGTGTCACTGCAAGTACCTCAAGCC
CCAGCGCTGCCACCTCAGCAACAGGGGCCCCGAGTGCTGAGCAATATCTT
TGCACTGGGTACCATATATACACCACCGTGGAGCCGTGTATGATGTGTGC
TATGGCCTTGCTCCACAGCCGAGTAGCCATG
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