mRNA_C-australica_Contig_987.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_987.5.1
Unique NamemRNA_C-australica_Contig_987.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A835YTH7_9STRA (Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTH7_9STRA)

HSP 1 Score: 584 bits (1505), Expect = 1.190e-205
Identity = 314/415 (75.66%), Postives = 346/415 (83.37%), Query Frame = 3
Query:   51 AAVASLALSYQVS--AFAPVAP--APVSWSNTALQAGPATGTGPGLQYEGGT--DPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELVALEAAGKTDAIV 1277
            A VA+LA++      AFAP  P  A  +  ++ L    +TGTG  L+Y+     DPN  NY RLSD L  ADVEA+   EE + RE+A+EIRRD RLAKINFMK+MDD +EVGTVEDFMFKEGVR+IL+ LD DLVGLIPVK+RVREIAALLVLDKMRG+LGFDT+VPSLHMCFTGAPGTGKTTVALRMGQILARMGYCR GHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVME QKEDLIVTLAGYKDRMDRFFS+IPGMSSR+GNHIDFPNYE DELVEIAQ MARD +Y + DSA+  F++YID R  FPFFSNARTVRNAMDRARMN +IR+FNEAV     DGMVS  DLA +T  DFQILLDELV  ++ GK DAIV
Sbjct:    6 AVVATLAVACATGSLAFAPAGPRTATPTVRSSKLILQQSTGTGKSLEYDPDKYKDPNAGNYRRLSDSLANADVEAKKAAEEMDKRERAAEIRRDERLAKINFMKEMDDELEVGTVEDFMFKEGVRDILDRLDSDLVGLIPVKKRVREIAALLVLDKMRGKLGFDTAVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRLGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMENQKEDLIVTLAGYKDRMDRFFSFIPGMSSRIGNHIDFPNYEKDELVEIAQVMARDLQYAMDDSAAAKFQEYIDLRMQFPFFSNARTVRNAMDRARMNSAIRVFNEAVVASSGDGMVSAMDLATITESDFQILLDELVHYQSIGKMDAIV 420          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A4ZW39_SACJA (CbbX n=1 Tax=Saccharina japonica TaxID=88149 RepID=A4ZW39_SACJA)

HSP 1 Score: 570 bits (1470), Expect = 2.760e-200
Identity = 313/423 (74.00%), Postives = 343/423 (81.09%), Query Frame = 3
Query:   42 MKFAAVASLALSYQVSAFAPVAPAPV-----SWSNTAL---QAGPATGTGPGLQYEGG--TDPNNK-NYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELVALEAAGKTDAIV 1277
            MK AA+ +LA+S      A   PA       + S TA+   Q    TG G GL Y     TD  NK NY +LS+ L+AADVEARI  EEA+ RE+ASEIRR+ RL KI FM DMDDSIEVGTVE+FMFKEGVR+IL+ LD DLVGL+PVK RVR+IAALLVLDKMRG+LGFDT+VPSLHMCFTGAPGTGKTTVALRMGQIL RMGYCR GHVVVATRDDLVGQYVGHTAPKTK+MIKKAFGGILLVDEAYYLYNA+NDKDYGQESIEILLNVME QKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNY  DELVEIA  MARD EY + DSA  VFK YI+ R  FPFFSNARTVRNAMDRARMN +IR+FN+A+      GMVS +DLAV+T  DFQ+LLDEL+  EA GK DAIV
Sbjct:    1 MKAAAMIALAMSGATGTAAFQIPAVTRQVSGASSRTAISMAQPSVGTGQGKGLDYNPDKFTDEKNKGNYRKLSEALEAADVEARINAEEADKRERASEIRREERLKKIKFMADMDDSIEVGTVEEFMFKEGVRDILDKLDSDLVGLVPVKLRVRQIAALLVLDKMRGKLGFDTAVPSLHMCFTGAPGTGKTTVALRMGQILQRMGYCRQGHVVVATRDDLVGQYVGHTAPKTKEMIKKAFGGILLVDEAYYLYNAANDKDYGQESIEILLNVMEEQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYLTDELVEIAIVMARDLEYFMDDSALAVFKQYIEKRMKFPFFSNARTVRNAMDRARMNSAIRVFNDAIIATGAGGMVSEKDLAVITDADFQVLLDELLEYEAIGKLDAIV 423          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A835Z7C7_9STRA (Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C7_9STRA)

HSP 1 Score: 549 bits (1414), Expect = 7.160e-192
Identity = 300/418 (71.77%), Postives = 338/418 (80.86%), Query Frame = 3
Query:   42 MKFAAVASLALSYQVSA--FAPVAP--APVSWSNTALQAGPATGTGPGLQY--EGGTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELVALEAAGKTDAIV 1277
            M+   +A+LA++    A  FAPV    A VS S ++L A  ATGTG  LQY  E   DPN  NY RLSD L+AADVEAR   EEA                 I +MKDMDD++EVGTVEDFMFKEGVR+IL+ LD DLVGL+PVK+RVREIAALLVLDKMRG+LGF+T+VPSLHMCFTGAPGTGKTTVALRMGQILARMGYCR GHV+VATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVME QKEDLIVTLAGYKDRMD+FFSYIPGMSSR+GNHIDFPNYE +ELVEIAQ MARD +Y + D+A+  F++YI+ R  FPFFSNARTVRNAMDRARMN +IR+FN++V    +DG+VS  DLA +T  DFQILLDEL   ++ GK DAIV
Sbjct:    1 MRTTLIATLAVACASGALGFAPVTQLRAGVSTSKSSL-AMQATGTGSSLQYDPEKYKDPNAGNYRRLSDSLQAADVEARKVAEEAXXXXXXXXXXXXXXXXXITYMKDMDDALEVGTVEDFMFKEGVRDILDRLDTDLVGLVPVKKRVREIAALLVLDKMRGKLGFETAVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRLGHVIVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMENQKEDLIVTLAGYKDRMDKFFSYIPGMSSRIGNHIDFPNYEKEELVEIAQVMARDLQYTMDDAAAAKFQEYINLRMKFPFFSNARTVRNAMDRARMNSAIRVFNDSVNIEGSDGLVSAADLATITAADFQILLDELEHYKSIGKMDAIV 417          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: D8LPQ0_ECTSI (CbbX protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ0_ECTSI)

HSP 1 Score: 539 bits (1389), Expect = 5.560e-188
Identity = 295/425 (69.41%), Postives = 333/425 (78.35%), Query Frame = 3
Query:   42 MKFAAVASLAL-------SYQVSAFAPVAPAPVSWSNTAL---QAGPATGTGPGLQYEG---GTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELVALEAAGKTDAIV 1277
            MK AA+ +LA+       ++Q+  F    PA  + S +AL   Q    TGTG  L+Y     G + N  NY +LS+ L+AADVEAR+ +E A+ R +A EIRR+AR+AKI FM+DM D+ EVGTVE+FMFKEGVR+ILE LD DLVGLIPVK RVR+IAALLVLDKMRG+LGFDTSVPSLHMCFTGAPGTGKTTVALRMGQIL RMGYCR GHVVVATRDDLVGQYVGHTAPKTK+MIKKAFGGILLVDEAYYLYNA+NDKDYGQESIEILLNVME QK+DLIVTLAGYKDRMDRFFSYIPGMSSR+GNHIDFPNY VDELVEIA  MARD +Y + D+A  VFK+YI+ R  FPFFSNARTVRNAMDRARMN +IR+FN AV    +                   LLDEL+A EA GK DAIV
Sbjct:    1 MKAAAMIALAMCGATGTAAFQIPVF--TRPATGASSRSALSMAQPTVGTGTGKSLEYNPEKYGDEKNAGNYRKLSEALEAADVEARLAEEAADQRARAGEIRREARMAKIKFMEDMPDNTEVGTVEEFMFKEGVRDILEKLDSDLVGLIPVKLRVRQIAALLVLDKMRGKLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILQRMGYCRQGHVVVATRDDLVGQYVGHTAPKTKEMIKKAFGGILLVDEAYYLYNAANDKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSSRIGNHIDFPNYLVDELVEIAMVMARDLQYFMDDAALAVFKEYIETRMKFPFFSNARTVRNAMDRARMNSAIRVFNNAVVSEGDXXXXXXXXXXXXXXXXXXXLLDELLAYEAVGKLDAIV 423          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A6U1QIB9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QIB9_9STRA)

HSP 1 Score: 520 bits (1338), Expect = 1.870e-180
Identity = 271/384 (70.57%), Postives = 315/384 (82.03%), Query Frame = 3
Query:  132 TALQAGPATGTGPGLQY--EGGTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELVALEAAGKTDAIV 1277
            T L + PATGTGPGLQY  +   DPNN N  +LSD L AADVE R+ QEEA  RE A+EIRR  R  KI+FMK+M D+   GTV+++M+KEGVREIL+ LD DLVGL+PVKQRVREIAALL+LDKMRG LGF+T+VPSLHM FTGAPGTGKTTVA+RMGQIL RMGY R GHV+VATRDDLVGQYVGHTAPKTK+MIK+AFGG+LLVDEAYYLYNA+N+KDYGQESIEILLNVME  K+DL+V LAGYKDRMDRFFSYIPGMSSR+GNHIDFPNYE +ELVEIA+ MAR+ EY+LA  A   F +YI+ R  FPFFSNARTVRNAMDRARMN +IR+F E +   +  GMV+ ++L  +T  DFQ ++DEL  +    K DAIV
Sbjct:   32 TQLYSSPATGTGPGLQYNPDAYADPNNANLRKLSDALNAADVEERLAQEEAYQRENAAEIRRQERQQKIDFMKNMPDNTPAGTVDEYMYKEGVREILDRLDTDLVGLLPVKQRVREIAALLILDKMRGNLGFETAVPSLHMSFTGAPGTGKTTVAIRMGQILQRMGYSRRGHVIVATRDDLVGQYVGHTAPKTKEMIKQAFGGVLLVDEAYYLYNAANEKDYGQESIEILLNVMENNKDDLVVVLAGYKDRMDRFFSYIPGMSSRIGNHIDFPNYETNELVEIAEVMARELEYVLAPGAQQKFLEYIELRMRFPFFSNARTVRNAMDRARMNSAIRLFQEGM--ARPGGMVTKDELQQITVADFQQMIDELKTM----KEDAIV 409          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A7S3XP00_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP00_HETAK)

HSP 1 Score: 517 bits (1331), Expect = 1.810e-179
Identity = 275/395 (69.62%), Postives = 318/395 (80.51%), Query Frame = 3
Query:   54 AVASLALSYQVSAFAPVAPAPVSWSNTALQAGPATGTGPGLQYEGGTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDEL 1238
            A+  LA++   SAF P    P S  N A+++G +         E   DPNN N+ +LSD L+AADVE R+E+EEA+ RE+A+E+RR+ R  KI +M+DM D+   G+V++FM+KEGVR+IL  LD+DLVGLIPVK+RVREIAALLVLDKMRG LGFDT+VPSLHMCFTGAPGTGKTTVA+RMGQILA+MGY R GHVVVATRDDLVGQYVGHTAPKTK+MIKKAFGG+LLVDEAYYLYNASNDK+YGQESIEILLNVMEAQ+EDL+V LAGYKDRMDRFFS+IPGMSSRVGNHI+FPNYEVDELV+I + MARD EY  A  A   FK YI+ R  FPFFSNARTVRNAMDRARMN +IRIF  A   G N+G V IEDL  L P DF  +  EL
Sbjct:    7 ALVMLAMAASASAFVP----PSSGLN-AIRSGSSLQMSLDYDPEKYNDPNNSNFRKLSDALEAADVEDRLEKEEADKRERAAELRREERQRKIKYMQDMPDNEPAGSVDEFMYKEGVRDILAKLDHDLVGLIPVKKRVREIAALLVLDKMRGNLGFDTAVPSLHMCFTGAPGTGKTTVAIRMGQILAKMGYSRKGHVVVATRDDLVGQYVGHTAPKTKEMIKKAFGGVLLVDEAYYLYNASNDKEYGQESIEILLNVMEAQREDLVVILAGYKDRMDRFFSFIPGMSSRVGNHIEFPNYEVDELVDIGKVMARDLEYEFAPGADMAFKRYIEKRLTFPFFSNARTVRNAMDRARMNSAIRIFTTATSGG-NNGEVGIEDLIRLEPEDFDQITGEL 395          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A7S2VYE9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYE9_9STRA)

HSP 1 Score: 502 bits (1293), Expect = 1.140e-173
Identity = 259/400 (64.75%), Postives = 315/400 (78.75%), Query Frame = 3
Query:   42 MKFAAVASLALSYQVSAFAPVAPAPVSWSNTALQAGPATGTGPGLQYEGGTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELV 1241
            MK  A  +       SAFAP   A  S S+T+L AG    TGP L Y GG DPN+ NY +LSD L  AD++ R  QE A+ARE A++ RR+ R  KI++M  M D+   GTV+DFMFKEGV+  L+ LD DLVGL+PVK+RV+EIAALLVLDKMR +LGF+TSVPSLH+ FTGAPGTGKTTVA+RMGQILA+MGY R GHVV+ATRDDLVGQYVGHTAPKTK+MIKKA GG+LLVDEAYYLYNA+ND+DYGQESIEILLNVME  ++DL+V +AGYKDRMD+FFSYIPGM+SR+GNHIDFP+Y  DELVEI+  M+R+ EY +  +A  VFK+Y++ R   PFFSNARTVRNAMDRARMN +IR F +   +G N G  SI+DL  ++P DFQ+LLD+++
Sbjct:    1 MKLTAAITAVCFASASAFAP---AITSQSSTSLYAGTPAFTGPSLDYTGGDDPNSSNYVKLSDALNDADIDRRKAQEAADAREHATQRRREERQKKIDYMVQMPDNTPAGTVDDFMFKEGVQSQLDKLDEDLVGLVPVKKRVKEIAALLVLDKMRRKLGFETSVPSLHLSFTGAPGTGKTTVAVRMGQILAKMGYSRRGHVVLATRDDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMENNQDDLVVAVAGYKDRMDKFFSYIPGMASRIGNHIDFPDYSADELVEISMVMSRELEYDIHPNAYPVFKNYVEKRMELPFFSNARTVRNAMDRARMNAAIRTFEKFAIQGVNGGFCSIQDLKEISPEDFQVLLDDIL 397          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A7S2SBU4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBU4_9STRA)

HSP 1 Score: 501 bits (1291), Expect = 2.540e-173
Identity = 268/408 (65.69%), Postives = 316/408 (77.45%), Query Frame = 3
Query:   63 SLALSYQVSAFAPVAPAPVSWSNTALQAGPATGTGPGLQY---EGGTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELVALEAAGKTDAIV 1277
            +LAL+   SAFAP   A    S   +   PATGTGPGL Y   +   + N  N+ +LS  L+  D+E +  ++EA  RE A E  R  R  KINFMK+M DS   G V DFM+K GV EILE LD+DL+GL+PVK+RVREIAALLVLDKMR +LGFDT+VPSLHMCFTGAPGTGKTTVA+RMGQIL RMGYCR GHV+VATRDDLVGQY+GHTAPKTK++IKKAFGG+LL+DEAYYLYNA+ND+DYGQESIEILLNVME QK+DLIV LAGYKDRMD+FFSYIPGM+SR+GNHIDFPNYEVDELV+IA  M RD EY + D +   F++YI+ R + PFFSNARTVRNAMDRARMN +IRIFNE +        V++ DL  +   DFQI+LDE++A   AG  DAIV
Sbjct:   10 ALALACGASAFAPARNAMPRASPRFMADSPATGTGPGLDYNPDQYSDEANAGNFRKLSQALEDGDIERKKAEQEALERENAMENARLERERKINFMKEMPDSTPAGRVADFMYKGGVTEILEQLDHDLIGLLPVKKRVREIAALLVLDKMRRKLGFDTAVPSLHMCFTGAPGTGKTTVAIRMGQILQRMGYCRQGHVIVATRDDLVGQYIGHTAPKTKEVIKKAFGGVLLIDEAYYLYNAANDRDYGQESIEILLNVMEQQKDDLIVVLAGYKDRMDKFFSYIPGMASRIGNHIDFPNYEVDELVDIASVMVRDLEYEMDDESKAKFREYINKRMSMPFFSNARTVRNAMDRARMNSAIRIFNEGI----GGTPVTVGDLKKIKSQDFQIILDEIIA---AGD-DAIV 409          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A8J2WWG8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWG8_9STRA)

HSP 1 Score: 496 bits (1278), Expect = 1.000e-170
Identity = 252/374 (67.38%), Postives = 301/374 (80.48%), Query Frame = 3
Query:  132 TALQAGPATGTGPGLQYE-GGTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELVALE 1250
            T +QA P  GTG G   E GG+D       +LS+ L+ AD+E +   EEAE R K  E  R+ +L K+ FMK+M D    G+V D+M+KEGV++ L+ LDYDLVGL+PVKQRVREIAALLVLDKMR +LGFDT+VPSLHMCFTGAPGTGKTTVA+RMGQILA+MGYCRSGHVVVATRDDLVGQYVGHTAPKTK++IK+A GG+LLVDEAYYLYNA+ND+DYGQESIEILL  ME  +EDL+V LAGYKDRMD+FFS+IPGMSSR+GNHIDFPNYEVDEL EI++ M+RD +Y + D A  VFK YI+ R   PFFSNARTVRNAMDRARMN +IR+F++A+  G N G V  +DL  +T  DFQ++LDE +A E
Sbjct:   73 TVVQANPGIGTGQGPSLEWGGSDTTTGGAKKLSEALEEADIERKKAVEEAERRAKWQEQEREEKLRKVAFMKEMPDDTPAGSVSDYMYKEGVKDQLDKLDYDLVGLLPVKQRVREIAALLVLDKMRRKLGFDTAVPSLHMCFTGAPGTGKTTVAVRMGQILAKMGYCRSGHVVVATRDDLVGQYVGHTAPKTKEVIKQALGGVLLVDEAYYLYNAANDRDYGQESIEILLTFMENNREDLVVVLAGYKDRMDKFFSFIPGMSSRIGNHIDFPNYEVDELFEISKVMSRDLDYEMTDEAGDVFKKYIERRMAMPFFSNARTVRNAMDRARMNAAIRVFDQAIA-GANGGDVGADDLKAITADDFQVILDEALAAE 445          
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Match: A0A7S2I8H2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8H2_9STRA)

HSP 1 Score: 494 bits (1273), Expect = 1.420e-170
Identity = 247/361 (68.42%), Postives = 295/361 (81.72%), Query Frame = 3
Query:  159 GTGPGLQYEGGTDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFMKDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLVLDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGHVVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDYGQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTVRNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELV 1241
            G G  L+Y GG DPNNKNY +L+D L  AD E R  +EEA ARE+A+E+RR+ RL KI +M DM D    GTV++FMFKEGV++ L+ LD DLVGL+PVK+RV+EIAALLVLDKMR +LGF+TSVPSLHM FTGAPGTGKTTVA+RMGQILA+MGY R GHVV+ATRDDLVGQYVGHTAPKTK+MIKKA GG+LLVDEAYYLYNA+ND+DYGQE IEILLNVME  ++DL+V +AGYKDRMD+FFSYIPGM SR+GNHIDFPNY  DELV+I+  MARD EY +  +A  VF+ YI+ R   P+FSNARTVRNAMDRARMN +IR F      G+N GM ++EDL  +   DFQ+LLD+++
Sbjct:   41 GAGQSLEYTGGDDPNNKNYVKLADALNVADTERRKAEEEALARERAAEMRREERLRKIQYMADMPDDQPAGTVDEFMFKEGVQDQLDKLDNDLVGLVPVKKRVKEIAALLVLDKMRRKLGFETSVPSLHMSFTGAPGTGKTTVAVRMGQILAKMGYSRRGHVVLATRDDLVGQYVGHTAPKTKEMIKKAMGGLLLVDEAYYLYNAANDRDYGQECIEILLNVMENNQDDLVVAVAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYNSDELVKISSVMARDLEYDIDPNAYPVFQHYIEERMQLPYFSNARTVRNAMDRARMNSAIRTFERFAINGENGGMCTVEDLRSIQAADFQVLLDDIL 401          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_987.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTH7_9STRA1.190e-20575.66Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A4ZW39_SACJA2.760e-20074.00CbbX n=1 Tax=Saccharina japonica TaxID=88149 RepID... [more]
A0A835Z7C7_9STRA7.160e-19271.77Cbbx protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
D8LPQ0_ECTSI5.560e-18869.41CbbX protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6U1QIB9_9STRA1.870e-18070.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XP00_HETAK1.810e-17969.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2VYE9_9STRA1.140e-17364.75Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2SBU4_9STRA2.540e-17365.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2WWG8_9STRA1.000e-17067.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2I8H2_9STRA1.420e-17068.42Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_987contigC-australica_Contig_987:14653..17231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPQ0
PFAMsAAA
Model size1414
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons10
Evalue1.57e-189
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-18_002020.1
DescriptionATP binding
Cds size1242
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_987.5.1prot_C-australica_Contig_987.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_987 14694..17100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588853.9150336-UTR-C-australica_Contig_987:14652..146931682588853.9150336-UTR-C-australica_Contig_987:14652..14693Chrysoparadoxa australica CS_1217UTRC-australica_Contig_987 14653..14693 +
1682588854.0496426-UTR-C-australica_Contig_987:17100..172311682588854.0496426-UTR-C-australica_Contig_987:17100..17231Chrysoparadoxa australica CS_1217UTRC-australica_Contig_987 17101..17231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588853.925067-CDS-C-australica_Contig_987:14693..148111682588853.925067-CDS-C-australica_Contig_987:14693..14811Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 14694..14811 +
1682588853.9339976-CDS-C-australica_Contig_987:15167..152471682588853.9339976-CDS-C-australica_Contig_987:15167..15247Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 15168..15247 +
1682588853.9437077-CDS-C-australica_Contig_987:15321..154471682588853.9437077-CDS-C-australica_Contig_987:15321..15447Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 15322..15447 +
1682588853.9539719-CDS-C-australica_Contig_987:15527..160481682588853.9539719-CDS-C-australica_Contig_987:15527..16048Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 15528..16048 +
1682588853.964876-CDS-C-australica_Contig_987:16145..162121682588853.964876-CDS-C-australica_Contig_987:16145..16212Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 16146..16212 +
1682588853.9744442-CDS-C-australica_Contig_987:16309..163751682588853.9744442-CDS-C-australica_Contig_987:16309..16375Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 16310..16375 +
1682588853.9842696-CDS-C-australica_Contig_987:16479..165481682588853.9842696-CDS-C-australica_Contig_987:16479..16548Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 16480..16548 +
1682588854.0038133-CDS-C-australica_Contig_987:16712..167941682588854.0038133-CDS-C-australica_Contig_987:16712..16794Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 16713..16794 +
1682588854.0250366-CDS-C-australica_Contig_987:16914..169641682588854.0250366-CDS-C-australica_Contig_987:16914..16964Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 16915..16964 +
1682588854.0403047-CDS-C-australica_Contig_987:17037..171001682588854.0403047-CDS-C-australica_Contig_987:17037..17100Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 17038..17100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_987.5.1

>prot_C-australica_Contig_987.5.1 ID=prot_C-australica_Contig_987.5.1|Name=mRNA_C-australica_Contig_987.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=414bp
MKFAAVASLALSYQVSAFAPVAPAPVSWSNTALQAGPATGTGPGLQYEGG
TDPNNKNYGRLSDKLKAADVEARIEQEEAEAREKASEIRRDARLAKINFM
KDMDDSIEVGTVEDFMFKEGVREILESLDYDLVGLIPVKQRVREIAALLV
LDKMRGRLGFDTSVPSLHMCFTGAPGTGKTTVALRMGQILARMGYCRSGH
VVVATRDDLVGQYVGHTAPKTKDMIKKAFGGILLVDEAYYLYNASNDKDY
GQESIEILLNVMEAQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDF
PNYEVDELVEIAQTMARDQEYLLADSASGVFKDYIDHRKNFPFFSNARTV
RNAMDRARMNQSIRIFNEAVKEGQNDGMVSIEDLAVLTPPDFQILLDELV
ALEAAGKTDAIVG*
back to top

mRNA from alignment at C-australica_Contig_987:14653..17231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_987.5.1 ID=mRNA_C-australica_Contig_987.5.1|Name=mRNA_C-australica_Contig_987.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2579bp|location=Sequence derived from alignment at C-australica_Contig_987:14653..17231+ (Chrysoparadoxa australica CS_1217)
AGAGGAGAAAGAAGATAGCTTGAAGCTACCAAAAGGGAGCCATGAAGTTT GCAGCTGTAGCATCGCTGGCATTGTCCTACCAAGTCTCTGCCTTTGCTCC TGTGGCACCTGCGCCTGTGAGCTGGTCAAACACAGCACTGCAGGCTGGCC CCGCAACAGGTACTGTACGGATGCCTGCGCCCTCCTTCCTTCCGCTTACG TTTGCATGAGCCAACACCTCACTGGACAGCTCAGTTTAGGTCTCTTTCGT CTTCCCCTAAAAAAGCCTGAAAAGCGTCGCAGCTAGAGTAGAGGGTAGAG TACTCTTGCTCATGTTTTAGACGTTTTGGGGCTTTGCGGCAAAAAAGTGC ACTTTGATGCATGTTGATGCATGTTTTCCCCCTCCTAACCTTTCTCCCCT AGGAGAGGTTGCCCCACCTTGCAAACGCATGCTCAAACACCTACCCAAGC ACCTCCCCTCTTGGAATGTATCCAGCCCGATCCTCTCTCCTGACCTGCTT CTTAACACCCCATAGGCACTGGACCCGGCCTGCAGTACGAGGGAGGCACT GACCCCAACAACAAGAACTATGGGAGGCTCTCTGACAAGCTAAAGGTATG CCTCTACCTCCTTCACTTCCACTGGGTTAGGTCAGCAACCCAGTAAAAAT TCCCCCCACCTTTGCCCAGGCTGCTGATGTTGAGGCAAGGATTGAGCAAG AAGAGGCTGAGGCCAGGGAGAAGGCTTCAGAGATTCGCAGGGATGCACGC CTGGCCAAGATCAACTTCATGAAGGATATGGATGACAGCATTGAGGTCAC CCCACTCTTGTTTGTCTCCAGTGCTAGATGAGCCCCTCGCAAGTGCTCAC GCAGCTGTCGGTGCCCTCTCACCAGGTTGGTACTGTGGAAGACTTCATGT TCAAGGAGGGAGTGAGGGAAATCCTGGAGAGCTTGGACTATGACCTTGTT GGTCTGATCCCTGTCAAGCAGCGTGTCAGAGAGATTGCTGCTCTGCTGGT CCTGGATAAGATGAGGGGCCGTCTGGGCTTTGACACCTCGGTGCCATCGC TGCACATGTGCTTTACTGGCGCTCCCGGGACCGGTAAGACCACTGTTGCT CTGAGGATGGGTCAGATTCTGGCCAGGATGGGCTACTGCCGCTCTGGCCA CGTGGTGGTTGCCACGCGTGATGATCTTGTGGGCCAGTACGTCGGCCACA CTGCCCCCAAAACCAAGGACATGATCAAGAAGGCCTTTGGTGGCATCTTG CTGGTTGACGAGGCCTACTACCTCTACAACGCCTCCAATGACAAGGACTA CGGTCAGGAGTCCATTGAGATCCTGCTGAATGTCATGGAGGCCCAGAAGG AGGACCTCATTGTCACCCTCGCTGGTTACAAGGACAGGATGGACAGGTGA CGAGCAGAGACGCACACGCTTGCCTGGTTTTTTGGCACCATCATTTATCT GCGGCTCTTACCTTTCCTTATCATGTTCCCTCTCCTTCCTTAGGTTTTTC TCCTATATCCCTGGTATGAGCTCCCGTGTTGGTAACCACATTGATTTCCC CAACTACGAGGTACATGCAACACCGTAACTAATAAGCTGTTTAACTGTTG TGCAGCTGCCTTGCTTTCGCTCATCTCTTACTGTCTAATTTCCTCATCAA TTCGTAGGTGGATGAGCTTGTAGAAATCGCCCAGACCATGGCACGTGACC AGGAATACCTCCTGGCTGACTCGGTAAATTGAGCACGTCACGGCTGGCTT TCATTGCTTGTTCCTACCCTAAGCATCGGAGCCTCAGCCTGTCCTAGACT GCCCAGCTCATCCTACCCTCCATGCAGGCCTCTGGCGTCTTCAAGGACTA CATTGACCACAGAAAGAACTTCCCCTTCTTCTCCAACGCACGAACGGTGA GTTAGCATACACACACCAAGCGTGAAGCTTTGCGCTACCACGGCCAGCTC TTTTCCAGCTAAGACTCTCTCTTTCTTATTGCTGTAAAGCCAAGTCCCCC AGCTTTCCACTTGCAGGTTGCGACTAACCTGACTTGGCCTTCTGCCCTAA ACCTTTTCAGGTTCGTAACGCTATGGACCGTGCCAGGATGAACCAGAGTA TCCGTATCTTCAATGAGGCTGTCAAGGAGGGCCAAAATGACGGTAATGAC TGACACTCCTCTCCTTCTATCACCTGGTCCCTCATTTTTTGCACATTAAC ATTAACATTAGTGCTCACTTGCTGATCGCCTCCTTTCCTCTCCTGCCTCT CTTGCTTTTCAGGTATGGTTTCAATTGAAGACCTTGCTGTACTGACTCCA CCAGACTTCCAGGTGAGACAAGTTGTAGGCGTTTATGTCTGTCTAATTAC TGCCTTTCGTGACTAACCAAACCTTCTGTGCTCAGATCCTACTTGATGAG CTGGTGGCTCTTGAGGCTGCTGGCAAGACTGATGCCATTGTAGGTTAAAA GGGGGGCGTACGTACGGTGGCTTAGCTTGTAGAGAGCTAGAACGCACACT TTGGCGCACTGATATAATGGTGATGGCTCAAGAGAGAGAGAGAGGAAGAA CTTGTAATATCAATGTATGCTATCAAGCC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_987:14653..17231+

>mRNA_C-australica_Contig_987.5.1 ID=mRNA_C-australica_Contig_987.5.1|Name=mRNA_C-australica_Contig_987.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1242bp|location=Sequence derived from alignment at C-australica_Contig_987:14653..17231+ (Chrysoparadoxa australica CS_1217)
ATGAAGTTTGCAGCTGTAGCATCGCTGGCATTGTCCTACCAAGTCTCTGC
CTTTGCTCCTGTGGCACCTGCGCCTGTGAGCTGGTCAAACACAGCACTGC
AGGCTGGCCCCGCAACAGGCACTGGACCCGGCCTGCAGTACGAGGGAGGC
ACTGACCCCAACAACAAGAACTATGGGAGGCTCTCTGACAAGCTAAAGGC
TGCTGATGTTGAGGCAAGGATTGAGCAAGAAGAGGCTGAGGCCAGGGAGA
AGGCTTCAGAGATTCGCAGGGATGCACGCCTGGCCAAGATCAACTTCATG
AAGGATATGGATGACAGCATTGAGGTTGGTACTGTGGAAGACTTCATGTT
CAAGGAGGGAGTGAGGGAAATCCTGGAGAGCTTGGACTATGACCTTGTTG
GTCTGATCCCTGTCAAGCAGCGTGTCAGAGAGATTGCTGCTCTGCTGGTC
CTGGATAAGATGAGGGGCCGTCTGGGCTTTGACACCTCGGTGCCATCGCT
GCACATGTGCTTTACTGGCGCTCCCGGGACCGGTAAGACCACTGTTGCTC
TGAGGATGGGTCAGATTCTGGCCAGGATGGGCTACTGCCGCTCTGGCCAC
GTGGTGGTTGCCACGCGTGATGATCTTGTGGGCCAGTACGTCGGCCACAC
TGCCCCCAAAACCAAGGACATGATCAAGAAGGCCTTTGGTGGCATCTTGC
TGGTTGACGAGGCCTACTACCTCTACAACGCCTCCAATGACAAGGACTAC
GGTCAGGAGTCCATTGAGATCCTGCTGAATGTCATGGAGGCCCAGAAGGA
GGACCTCATTGTCACCCTCGCTGGTTACAAGGACAGGATGGACAGGTTTT
TCTCCTATATCCCTGGTATGAGCTCCCGTGTTGGTAACCACATTGATTTC
CCCAACTACGAGGTGGATGAGCTTGTAGAAATCGCCCAGACCATGGCACG
TGACCAGGAATACCTCCTGGCTGACTCGGCCTCTGGCGTCTTCAAGGACT
ACATTGACCACAGAAAGAACTTCCCCTTCTTCTCCAACGCACGAACGGTT
CGTAACGCTATGGACCGTGCCAGGATGAACCAGAGTATCCGTATCTTCAA
TGAGGCTGTCAAGGAGGGCCAAAATGACGGTATGGTTTCAATTGAAGACC
TTGCTGTACTGACTCCACCAGACTTCCAGATCCTACTTGATGAGCTGGTG
GCTCTTGAGGCTGCTGGCAAGACTGATGCCATTGTAGGTTAA
back to top