mRNA_C-australica_Contig_987.1.4 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_987.1.4
Unique NamemRNA_C-australica_Contig_987.1.4
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A7S2DYA4_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DYA4_9STRA)

HSP 1 Score: 286 bits (732), Expect = 2.410e-84
Identity = 173/444 (38.96%), Postives = 264/444 (59.46%), Query Frame = 2
Query:  941 VAKNHLSRAEAMEVCLRGHHCIAKNSDGRKTFVVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQ-DAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQLLIDFPTNMIN---------TYKDESTAGDKVVEVKKEM--EKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            V+  H++  + + V   G H I   +D R+ FV A       + FG+   S+ PL+G PY ++FE T   + R+  T  L   D+ S     G  A D+  DNR ++D N +Q+LT EE++ M+ D   SG EII+AL  NS T++SKT+FSQQKWLA+K QK+ PR+RLV C AE+VC+ Y +K   +++ L   +L  IL + NV+AG   +V+D ++G+V+ +V+ER+G  GR++A Y G+  A DAVK  NF       +L+ F T+ +           ++D   + + V    K++  E+   + +K      ++ +   +K + +R+ R   RP P  +R WLR+QCDSLIIAT   PL  L  L+P LA   PFV++ EF++PL+  F  V+   LA +++L + + RE+Q++PGRTHP M+MSS GG+ILTG KV
Sbjct:    8 VSTEHVTEDDTLLV-KEGEHVILLGADDRRYFVEAKRGTN--QRFGKLNCSVIPLIGQPYGSIFELTKKGMSRLFDTDSLTQADEGSALLSPG--AADS-CDNRSLVDTNTSQKLTHEEIEAMKLDPKVSGKEIIQALVHNSDTWESKTQFSQQKWLARKQQKHTPRVRLVLCEAESVCDTYYQKNRERVSNLRSDSLAQILAYGNVFAGGNVLVFDTVMGLVVSSVVERLGGHGRLLAAYAGKQAAFDAVKHMNFTSRQ-SSVLVPFHTSELAKVRGDAAMAAFEDVDDSPEAVAARAKKLIEERPAFVTEKLASLTEESERAAYLKRRADRIKRQTARPSPGTVRNWLRQQCDSLIIATEFHPLTVLLELLPVLAFSAPFVIFCEFLEPLVQAFREVRKRNLACKLQLSNTWTREYQVLPGRTHPSMNMSSCGGYILTGIKV 444          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A2D4BY31_PYTIN (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY31_PYTIN)

HSP 1 Score: 262 bits (669), Expect = 4.620e-75
Identity = 154/418 (36.84%), Postives = 246/418 (58.85%), Query Frame = 2
Query:  992 GHHCIAKNSDGRKTFVVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQLLIDFPTNMINTYK---DESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            G   I + SDGR  F     +C +    G+    + P++GA Y ++FE    KL  V G L      D    E   F   DT  DNR+  D N AQ+L+  ++  M+++G SG EII+ L ENS T+ +KTEFS+QK+L KK QKY PR+R +KCTA+++C  Y+ K   ++  +   +LG IL+++N++A  + +V D  +G+V GA+ ER    GR++A Y GQ LAAD +++FNF + T++ +   FP N +   +   ++    ++VV+ +   E+ + +  ++  + T+  +EK    K  R A  ++R   + +R W+R Q DSL+IA+  DP   L  L+P+L   RPFVVY E+++PL   F  ++     + V+L + + REHQ++PGRTHP+M M++  G++LTG KV
Sbjct:   38 GDTVICETSDGRIFFQEVKANCTI--RVGKKLTPLKPVIGAXYGSIFEEQNKKLVAVSGGLFP----DPVAPETGEFEVPDT--DNRNYTDTNSAQKLSVHDITGMRESGASGREIIQKLVENSETWDAKTEFSKQKYLKKKQQKYMPRVRFLKCTADSLCRTYRAKNPSKICNIREDSLGQILMYANIHAEAQVLVVDTCMGLVTGAIAERQAGLGRIIAGYEGQQLAADILRRFNFDKSTMESIHT-FPLNSVQYLEMKEEDIPESEQVVKDRLSEEEKLRLEAERVAEYTEEEQEKYYIKKARRAAEKMQRQPATTVREWIRNQSDSLVIASHYDPEPVLLALLPYLKCSRPFVVYXEYMEPLTRLFGKLQQMDSVIDVQLSETWTREHQILPGRTHPEMKMNAFSGYLLTGTKV 446          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 1.750e-73
Identity = 161/443 (36.34%), Postives = 245/443 (55.30%), Query Frame = 2
Query:  953 HLSRAEAMEVCLR-GHHCIAKNSDGRKTFVVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTE---RDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQLLIDFPTNMINTYK-----------DESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            H+++ E +E  +  G   +  +SDGR  FV  +   ++  + G+T   M  L+ APY AVFE  G +L RV+G L+  + +     E     AL ++   +DNR   D N AQ+LT E++ KM++ G  G  II+AL +NS T+ +KT++SQ KWL +K QKY PR+R+V+ T  T+C+AY  K   +++ L    L L+L H+NV+AGC+A+V D  +GVV  A++ERMG QGR+ A Y     + DAV+KF+  E+ + + L+   T+ +               D+   GD   E ++ + ++ ++MD  G  V +  +   I+ K  R+ R   RP P Q+R WLR+ CD L+IA   DP+ A+  ++PHL   RPF +YSEFI+ L                             PGRTHP  +MSS GG++LTG K+
Sbjct:   18 HVAKMERIEGQVNDGDTILVDHSDGRTFFVKVESGKRV--NIGKTSCKMSYLLNAPYGAVFELDGNRLVRVDGELVEAEEEPPGVVEEVTAAALASDVRPQDNRGFTDTNTAQKLTEEDIHKMKNEGKGGRAIIQALMDNSDTWGNKTQYSQAKWLKRKQQKYRPRVRVVRVTGRTMCDAYFAKNREKVSNLRSDALALVLTHANVFAGCQALVLDTCMGVVTAAMLERMGCQGRIFALYAQSQPSMDAVRKFDHAEKNLLKCLLPLHTSELGRLSIPESEREADPVDDGGPGDSRTE-EEALAEYRTVMDDHG--VPEKDRPARIERKLARMRRNKHRPAPRQVRDWLRQGCDCLVIACKFDPIAAVDAMLPHLTPSRPFAIYSEFIEVL-----------------------------PGRTHPLNNMSSCGGYVLTGIKI 426          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A3M6VJP5_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJP5_9STRA)

HSP 1 Score: 254 bits (649), Expect = 2.010e-72
Identity = 152/428 (35.51%), Postives = 250/428 (58.41%), Query Frame = 2
Query:  980 VCLRGHHCIAKNSDGRKTF--VVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLML-----EDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQL-LIDFP-TNMINTYKDESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            V   G   I + SDGR  F  V  + S ++    G+   ++ P++G+ Y A+FE    KL +V G L       E G+D              + DNRH  D N AQ L   ++ +++++G SG EII+ L ENS+T+++KTEFS+QK+L KK QKY PR+R ++CTAE++C  Y+ K   ++  L   +LG IL++ N++AG + +V D  +G+V GAV ER G  GR++ P+ GQ  AAD +++FNF + T++ +  + F    ++   ++E     K+      +E+   +  ++    T   +++  + K  R    I R +PS +R+W+RE+ DSL+IA   DP + L  L+P+L   +PFVVYSEF++PL   F  ++     + ++L + + RE+Q++PGRTHP+M+MS+  G++L G K+
Sbjct:   19 VIYEGDTVICQTSDGRMFFQAVTKNESIRV----GKKVANLKPVIGSFYGAIFEEQNKKLVKVTGGLFPDPVAPETGED-----------FVPDGDNRHYADTNSAQTLKQADIGELRESGASGKEIIQKLVENSSTWETKTEFSKQKYLKKKQQKYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGQVLVVDTCMGLVAGAVAERQGGSGRIICPFDGQQPAADILRRFNFDKRTLESIHYVPFKQVRLLELKEEEVVESPKIARDGLTLEERERLAAERAKNFTPEQQKRYAEKKARREETKIFRQKPSTVRQWIREKSDSLVIAANFDPEEVLMALLPYLGRSKPFVVYSEFLEPLTRTFARLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLWGIKI 431          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: H3GKX8_PHYRM (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKX8_PHYRM)

HSP 1 Score: 251 bits (641), Expect = 1.010e-71
Identity = 145/389 (37.28%), Postives = 232/389 (59.64%), Query Frame = 2
Query: 1076 GRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQL-LIDFP-TNMINTYKDESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            G+   S+ P++G+ Y A+FE    KL +V G L     D  +    +GF     + DNRH  D N AQ L   ++ ++++ G SG EII+ L ENS+T+++KTEFS+QK+L KK QKY PR+R ++CTAE++C  Y+ K   ++  L   +LG IL++ N++AG   +V D  +G+V GA+ ER G  GR++ PY GQ  AAD +++FNF + TV+ +  I F    ++   +++     KV       E+   + +++    T          K  R    + R  PS IR+W+RE+ DSL+IA   DP + L  ++P+LA  +PFVVYSEF++PL   F  ++     + ++L + + RE+Q++PGRTHP+M+MS+  G++L+G K+
Sbjct:   15 GKKVASLKPVIGSFYGAIFEEQNKKLVKVTGGLFP---DPVAPETGEGFVP---DGDNRHYADTNSAQTLKQTDIGELREKGASGKEIIQKLVENSSTWETKTEFSKQKYLKKKQQKYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGHVLVVDTCMGLVAGAIAERQGGSGRIICPYEGQQPAADILRRFNFDKRTVESIHYIPFKQVRLLELNEEDVVEPQKVARDGLTPEERERLAEERAKTFTXXXXXXXXXXKARRDGTKVNRQSPSTIRQWMREKSDSLVIAANYDPEEVLLAMLPYLARSKPFVVYSEFLEPLTRTFATLQKMEAVIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 397          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A225VLQ1_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLQ1_9STRA)

HSP 1 Score: 251 bits (640), Expect = 3.430e-71
Identity = 152/423 (35.93%), Postives = 246/423 (58.16%), Query Frame = 2
Query:  980 VCLRGHHCIAKNSDGRKTF--VVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQL-LIDFP-TNMINTYKDESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            V   G   I + SDGR  F  V  D S ++    G+   ++ P++G+ Y A+FE    KL +V G L   D      GE     +   + DNRH  D N AQ L   ++ ++++ G SG EII+ L ENS+T+++KTEFS+QK+L KK QKY PR+R ++CTAE++C  Y+ K   ++  L   +LG IL++ N++AG + +V D  +G+V G++ ER G  G ++ PY GQ  AAD +++FNF ++T++ +  + F    M+   +++     KV       E+   +  ++    T   + +  + K  R    I R +PS IR+W RE+ DSL+IA   DP + L  L+P L   +PFV+YSEF++PL   F  ++     + ++L + + RE+Q++PGRTHP+M+MS+  G++L+G K+
Sbjct:   18 VIYEGDTVICQTSDGRMFFQAVTKDESIRV----GKKVANLKPVIGSFYGAIFEEQNKKLVKVTGGLFP-DPVAPETGE-----SFVPDGDNRHYADTNSAQTLKQTDIGELREKGASGKEIIQKLVENSSTWETKTEFSKQKYLKKKQQKYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGRVLVVDTCMGLVAGSIAERQGGSGCIICPYEGQQPAADILRRFNFDKKTLESIHYMPFKQVRMLEMEEEDVVEAPKVARDGLTPEERELLAAERAKNFTPEQQRRYAEKKARREQTKIYRQKPSTIRQWAREKSDSLVIAATYDPEEILMALLPFLGRSKPFVIYSEFLEPLTRTFATLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 430          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A2D4CD60_PYTIN (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD60_PYTIN)

HSP 1 Score: 261 bits (666), Expect = 5.710e-70
Identity = 154/418 (36.84%), Postives = 246/418 (58.85%), Query Frame = 2
Query:  992 GHHCIAKNSDGRKTFVVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQLLIDFPTNMINTYK---DESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            G   I + SDGR  F     +C +    G+    + P++GA Y ++FE    KL  V G L      D    E   F   DT  DNR+  D N AQ+L+  ++  M+++G SG EII+ L ENS T+ +KTEFS+QK+L KK QKY PR+R +KCTA+++C  Y+ K   ++  +   +LG IL+++N++A  + +V D  +G+V GA+ ER    GR++A Y GQ LAAD +++FNF + T++ +   FP N +   +   ++    ++VV+ +   E+ + +  ++  + T+  +EK    K  R A  ++R   + +R W+R Q DSL+IA+  DP   L  L+P+L   RPFVVY E+++PL   F  ++     + V+L + + REHQ++PGRTHP+M M++  G++LTG KV
Sbjct:   72 GDTVICETSDGRIFFQEVKANCTI--RVGKKLTPLKPVIGAFYGSIFEEQNKKLVAVSGGLFP----DPVAPETGEFEVPDT--DNRNYTDTNSAQKLSVHDITGMRESGASGREIIQKLVENSETWDAKTEFSKQKYLKKKQQKYMPRVRFLKCTADSLCRTYRAKNPSKICNIREDSLGQILMYANIHAEAQVLVVDTCMGLVTGAIAERQAGLGRIIAGYEGQQLAADILRRFNFDKSTMESIHT-FPLNSVQYLEMKEEDIPESEQVVKDRLSEEEKLRLEAERVAEYTEEEQEKYYIKKARRAAEKMQRQPATTVREWIRNQSDSLVIASHYDPEPVLLALLPYLKCSRPFVVYCEYMEPLTRLFGKLQQMDSVIDVQLSETWTREHQILPGRTHPEMKMNAFSGYLLTGTKV 480          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A067C628_SAPPC (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C628_SAPPC)

HSP 1 Score: 240 bits (612), Expect = 2.020e-67
Identity = 156/444 (35.14%), Postives = 248/444 (55.86%), Query Frame = 2
Query:  977 EVCLRGHHCIAKNSDGRKTFVVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQLLIDFPTNMINTY-KDES-------------TAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKVE---PPGDKA 2257
            EV   G   +   SD R  F   + S ++    G+  +++   +G PY  +FE +   L  V G L      D    E   F       DNRH  D N +Q+L+  ++ +++ +G +G E+I  L ENS T+ +KTEFS+QK+L KK QKY PR+++V+CTA ++ E Y  ++  ++  L   TLG +L + NVYAG + +V D  +G+  GA+ ERM   GR++A + GQ +AAD +++FNF E  V   ++ FP   +    KDE+             +  +++   ++E+ + +++   +      A KE  IKA++ +  RT     P+++R  LR   DSLIIA+  DPL  L  L+P L + +PFVVYSE+++PL   F+ ++     V ++L D + RE+Q++PGRTHP+M MS+  G+IL+G KVE   PP   A
Sbjct:    3 EVIRDGDTVVCYTSDDRVFF--QEVSPKMTLRIGKATVTLKSAIGHPYGTIFEESEKALVPVTGGLFP----DPVAPEVGDFQV--PTNDNRHYTDTNDSQKLSNVQIAELRASGVNGPELIAKLVENSDTWDTKTEFSKQKYLKKKQQKYMPRIQMVRCTAMSLAEVYHARQPFKILNLRADTLGQLLQYGNVYAGAQVLVVDTCMGLATGAIAERMLGHGRILAGFEGQQMAADTLRRFNF-EPAVHDSIVPFPLAYVGLLTKDEADLAPPPKSQAEMDSTNEEIEARQREVAERVALYSPEEQAKYLAKKEARIKARQTKTRRT-----PAEVRALLRSPSDSLIIASHYDPLSMLQALLPLLGLSKPFVVYSEYLEPLTTAFDALQRMDSIVNLQLNDTWTREYQVLPGRTHPEMTMSAGSGYILSGIKVESSPPPASHA 432          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A0P1AWZ4_PLAHL (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ4_PLAHL)

HSP 1 Score: 240 bits (613), Expect = 2.790e-67
Identity = 152/427 (35.60%), Postives = 241/427 (56.44%), Query Frame = 2
Query:  980 VCLRGHHCIAKNSDGRKTF--VVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQLLIDFPTNMINTYKDESTAGDKVVEVKK------EMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            +   G   I + SDGR  F  +  + S ++    G+   S+ P+VG+ Y A+FE    KL +V G L   D      GE      L+ + DNRH  D N AQ L   ++ +++D G SG EII+ L ENS+T+++KT+FS+QK+L KK QKY PR+R ++CTAE++C  Y+ K   ++  +   +LG IL+++N++AG + +V D  +G+V GA+ ER    G ++ PY GQ  AAD +++FNF ++T++ +    P N +     E    D VVE+K+        E                      + K  R    + R +PS IR W+R++ DSL+IA   DP   L  L+P+L   +PFV+YSEF++PL   F  ++     + ++L + + RE+Q++PGRTHP+M MS+  G++L+G K+
Sbjct:   22 IIYEGDTVICQTSDGRMFFQAITKNESIRV----GKKVASLKPVVGSFYGAIFEEQNKKLVKVTGGLFP-DPVAPETGE-----GLNPDEDNRHFADTNSAQMLKQTDIGELRDKGASGKEIIQKLVENSSTWETKTDFSKQKYLKKKQQKYMPRVRFLRCTAESLCRTYRLKNPMKICNMREDSLGQILVYANIFAGGQVLVVDTCMGLVAGAIAERQRGTGCIICPYEGQQPAADILRRFNFDKQTLESIHY-MPFNQVRML--EMNEED-VVEIKQVARDGLSQEXXXXXXXXXXXXXXXXXXXXXAEKKALREQTKLFRQKPSTIREWVRQKSDSLVIAANYDPEKVLMALLPYLGRSKPFVIYSEFLEPLTRTFATLQKLEAIIDLQLNETWTRENQVLPGRTHPEMSMSACSGYLLSGIKI 434          
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Match: A0A0W8CAK1_PHYNI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CAK1_PHYNI)

HSP 1 Score: 240 bits (612), Expect = 3.150e-67
Identity = 154/428 (35.98%), Postives = 244/428 (57.01%), Query Frame = 2
Query:  980 VCLRGHHCIAKNSDGRKTF--VVADGSCQLLKSFGRTKISMGPLVGAPYEAVFEFTGGKLKRVEGTLML-----EDGDDKSFGEWKGFNALDTERDNRHVIDDNRAQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQKYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCKAMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVKQL-LIDFP-TNMINTYKDESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAKEKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLIPHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPGRTHPKMDMSSLGGFILTGFKV 2236
            V   G   I + SDGR  F  V  D S ++    G+   ++ P++G+ Y A+FE    KL +V G L       E GD        GF     + DNRH  D N AQ L   ++ ++++ G SG EII+ L ENS+T+++KTEFS+QK+L KK QKY PR+R ++CTAE++C  Y+ K   ++  L   +LG IL++ N++AG + +V D  +G+V GA+ ER G  GR++ PY GQ  AAD +++FNF + T++ +  + F    ++   +++     KV       E+   +  ++    T     +  + K  R    + R +PS IR W RE+ DSL+IA   DP + L  L+P+L   +PFVVYSEF++         K E + + ++L + + RE+Q++PGRTHP+M+MS+  G++L+G K+
Sbjct:   25 VIYEGDTVICQTSDGRMFFQAVAKDESIRV----GKKVANLKPVIGSFYGAIFEEQNKKLVKVTGGLFPDPVAPETGD--------GFVP---DGDNRHYADTNSAQTLKQTDIGELREKGASGKEIIQKLVENSSTWETKTEFSKQKYLKKKQQKYMPRVRFLRCTAESLCRTYRLKNPAKICNLREDSLGQILVYGNIFAGGQVLVVDTCMGLVTGAIAERQGGSGRIICPYEGQQPAADILRRFNFDKRTLESIHYMPFKQVRLLEMEEEDVVEPAKVARDGLTPEEREQLAAERAKNFTPXXXXRYAEKKARREQTKLFRQKPSTIREWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLE---------KMEAI-IDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKI 427          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_987.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2DYA4_9STRA2.410e-8438.96tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A2D4BY31_PYTIN4.620e-7536.84tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
D8LS75_ECTSI1.750e-7336.34tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A3M6VJP5_9STRA2.010e-7235.51tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
H3GKX8_PHYRM1.010e-7137.28tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A225VLQ1_9STRA3.430e-7135.93tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A2D4CD60_PYTIN5.710e-7036.84tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A067C628_SAPPC2.020e-6735.14tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0P1AWZ4_PLAHL2.790e-6735.60tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0W8CAK1_PHYNI3.150e-6735.98tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_987contigC-australica_Contig_987:6625..10732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo127192
PFAMsGcd10p
Model size2432
Max annot lvl4776|Peronosporales
KEGG koko:K03256
Hectar predicted targeting categoryother localisation
Exons15
Evalue1.99e-78
EggNOG OGsKOG1416@1|root,KOG1416@2759|Eukaryota,3Q944@4776|Peronosporales
Ec32 ortholog descriptionEukaryotic initiation factor 3, gamma subunit
Ec32 orthologEc-12_004570.1
DescriptionGcd10p family
Cds size1356
COG categoryJ
BRITEko00000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_987.1.4prot_C-australica_Contig_987.1.4Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_987 6728..9603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588853.5501552-UTR-C-australica_Contig_987:6624..67271682588853.5501552-UTR-C-australica_Contig_987:6624..6727Chrysoparadoxa australica CS_1217UTRC-australica_Contig_987 6625..6727 -
1682588853.6888397-UTR-C-australica_Contig_987:9603..98711682588853.6888397-UTR-C-australica_Contig_987:9603..9871Chrysoparadoxa australica CS_1217UTRC-australica_Contig_987 9604..9871 -
1682588853.70032-UTR-C-australica_Contig_987:9946..103921682588853.70032-UTR-C-australica_Contig_987:9946..10392Chrysoparadoxa australica CS_1217UTRC-australica_Contig_987 9947..10392 -
1682588853.7119927-UTR-C-australica_Contig_987:10473..107321682588853.7119927-UTR-C-australica_Contig_987:10473..10732Chrysoparadoxa australica CS_1217UTRC-australica_Contig_987 10474..10732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588853.5598469-CDS-C-australica_Contig_987:6727..68951682588853.5598469-CDS-C-australica_Contig_987:6727..6895Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 6728..6895 -
1682588853.5678089-CDS-C-australica_Contig_987:7047..71041682588853.5678089-CDS-C-australica_Contig_987:7047..7104Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 7048..7104 -
1682588853.5757887-CDS-C-australica_Contig_987:7257..74221682588853.5757887-CDS-C-australica_Contig_987:7257..7422Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 7258..7422 -
1682588853.5852232-CDS-C-australica_Contig_987:7508..76451682588853.5852232-CDS-C-australica_Contig_987:7508..7645Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 7509..7645 -
1682588853.5952792-CDS-C-australica_Contig_987:7897..80041682588853.5952792-CDS-C-australica_Contig_987:7897..8004Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 7898..8004 -
1682588853.6060884-CDS-C-australica_Contig_987:8130..82521682588853.6060884-CDS-C-australica_Contig_987:8130..8252Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 8131..8252 -
1682588853.6183805-CDS-C-australica_Contig_987:8507..85761682588853.6183805-CDS-C-australica_Contig_987:8507..8576Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 8508..8576 -
1682588853.6296136-CDS-C-australica_Contig_987:8671..87521682588853.6296136-CDS-C-australica_Contig_987:8671..8752Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 8672..8752 -
1682588853.6407638-CDS-C-australica_Contig_987:8834..89661682588853.6407638-CDS-C-australica_Contig_987:8834..8966Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 8835..8966 -
1682588853.6497319-CDS-C-australica_Contig_987:9057..91311682588853.6497319-CDS-C-australica_Contig_987:9057..9131Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 9058..9131 -
1682588853.6593318-CDS-C-australica_Contig_987:9217..92841682588853.6593318-CDS-C-australica_Contig_987:9217..9284Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 9218..9284 -
1682588853.6690748-CDS-C-australica_Contig_987:9356..94501682588853.6690748-CDS-C-australica_Contig_987:9356..9450Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 9357..9450 -
1682588853.6790206-CDS-C-australica_Contig_987:9520..96031682588853.6790206-CDS-C-australica_Contig_987:9520..9603Chrysoparadoxa australica CS_1217CDSC-australica_Contig_987 9521..9603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_987.1.4

>prot_C-australica_Contig_987.1.4 ID=prot_C-australica_Contig_987.1.4|Name=mRNA_C-australica_Contig_987.1.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=452bp
MEVCLRGHHCIAKNSDGRKTFVVADGSCQLLKSFGRTKISMGPLVGAPYE
AVFEFTGGKLKRVEGTLMLEDGDDKSFGEWKGFNALDTERDNRHVIDDNR
AQQLTPEEVKKMQDAGTSGTEIIKALAENSATFQSKTEFSQQKWLAKKSQ
KYCPRMRLVKCTAETVCEAYQEKKTRQMAGLLGSTLGLILLHSNVYAGCK
AMVYDGILGVVLGAVMERMGLQGRVMAPYPGQTLAADAVKKFNFPEETVK
QLLIDFPTNMINTYKDESTAGDKVVEVKKEMEKFISIMDKKGDKVTKAAK
EKMIKAKKERLARTIERPQPSQIRRWLREQCDSLIIATLDDPLDALTHLI
PHLAVGRPFVVYSEFIQPLLPCFEFVKDEGLAVRVRLMDAFYREHQMVPG
RTHPKMDMSSLGGFILTGFKVEPPGDKAERPNKDKKRLAGSYQYKKRRQK
Y*
back to top

mRNA from alignment at C-australica_Contig_987:6625..10732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_987.1.4 ID=mRNA_C-australica_Contig_987.1.4|Name=mRNA_C-australica_Contig_987.1.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4108bp|location=Sequence derived from alignment at C-australica_Contig_987:6625..10732- (Chrysoparadoxa australica CS_1217)
GAAGGAGAGGAAGGAGCCTAAGGAGGACATCAGAGCATGAGCGAAACCAA ATCGCTTTATCTTCCTCTGTTTCTCTGCTCTCGCCTCCCCCCTTTTTTGA CATCCACACCTTTCCTTCTCTGTGCATCTCAGATTTAAGCTTAACTAACT CTTGCTTAACTTTCCAATAGAGGGGTTATAATCCCAGATTGACACTGGCC CTCGGGCTCTATTACAAGTATGCCAAGGTTAAAGGGAGGGTGATATAAGG AGAGCTCTGGTAGGTAGCGATGTCGTCATTCACACACTCCAACTGCATCT TTTCTTACTGCATTTCTTGAATTTGCCAACTTCCCATTAGAGGCATTCGA GTTATGAACTTTCAGCCTCGCTAGACCTAGATGGGGACTCCTTCACTCCC TGGTTGCTCCCGACTATTAACCTAACCCAAAACAAGACGAGGCTGTGTCT TCGGTTTCCGCATCCTCTGCTGCAAACCGGTCAGCTCTTTCTCTGTTCTT GCCAATTTCCTTAACGCCAGTGCCATCTGGGATGCCCGAAGCAGGTTAGG GAAGGGGGAGGTCCGTAGAGGCCAGTGCCCATTTCAAGCAACAGTCTTTT ATCTGGTGGCCAGTCTTACCTGCTTGTTCTTCCTCAGCAAGTCTTCCCTG AGCAGGGCCACGTCCGGGTTTGAGTGCTTCCACAGGTTCAGCTCTTCAAT CAGGTCACTCTCTCGCTGGCGAGCCTGAATTAACTCAGCGGTGAGACAGT GAACCCTCTCCCGCAGGGCCTGCATGGAATGGAGGAGTCCAACCTGGGGA TGGGAATACGGGAATACGATTAGAAGGAGAGCCAGGAAGAGAGGAGAGAA GGGGAGGGGAGAAACCTTTCCAATAGTCAAGAACCAGCGCCTATTGTTCT CTCCTCTCTTTAACAATGCCTCCGTTGTCCCCTCGTTGTATCGTACGTAT ACAGTACTCCACAGGGGGGGTCAGTGGGTCAGTTAGCGGGGGAAGCGGGA GAGCCACGGCCTGATCTTGAAAATCTGGAGGACTGGAGGAAGAGAGCAAA ACAGAATGCATCTAAAGGAATAGTGCTATAGAGCAGAACTGTCCTTGTTG CCAAGAACCATCTGAGCAGAGCAGAGGCCATGGAGGTGTGCTTGCGGGGC CACCACTGCATAGCGAAGAACTCCGATGGACGCAAGACGTTTGTGGTCGC TGATGGAAGCTGGTGAGTTCATCCTACGCTTCCATACTCAGGCAAAGCCG CAACTAATTCTCCATCGTCTTTAACTTCACAGCCAGCTCCTCAAGAGCTT TGGCAGAACGAAAATCAGTATGGGTCCTTTGGTTGGGGCGCCGTATGAGG CAGTATTCGAATTTACTGGGGGCAAGGTGAGATCATAGTCAGGTCTCCTG CACTGCACAAGCTGCCCATAACCTAGATGACCTTTGCGCATGCTCTAGCT GAAGCGAGTAGAAGGCACACTGATGTTGGAGGATGGGGATGACAAATCTT TTGGGGAGTGGAAAGGTAGGACTCATTTGCCCCACCCTGATTGACCCCTG ACCTTACCTCACTGACGGGGTGCTGCACATGACACCATGGTTGTTGTCCA GGCTTCAATGCACTTGATACGGAGCGCGACAACCGACACGTGATAGATGA CAATAGAGCCCAGCAGTTGACACCAGTGAGTAAAGCAATGCCTACGGGGA AGAGTAAAGTGTTGCCTTTGTGTTTGTGCACTCACTCAGCTCCTACAATG AACGGCACCGCCTCAGGAGGAGGTGAAAAAGATGCAAGATGCTGGTACCA GTGGTACCGAAATAATCAAGGCCTTGGCTGAGAACTCTGCAACCTTTCAA TCCAAGACTGAGTTTTCCCAGCAGAAATGGCTGGCAAAGAAGTCACAGGT GGATCAGCCCGCCTATCCATGTTGCTTTCAAAGAATGCCTTTGCTCTGAT GCCAGGCAAACCACCTGCGACTGCACTCAGAAATACTGCCCCAGAATGCG CCTGGTGAAGTGCACAGCAGAGACTGTGTGCGAGGCATACCAAGAGAAGA AGACTAGACAGGTCAGGTTATGGCCACAAGCAATGGCTCAACGTGAAGTG AGCCCGTATCAAACTCTGATTGCACTGACTGTACTGTGGCTTGGTTTGCA CCACAGATGGCGGGTCTCCTGGGCAGCACGCTGGGTTTGATTTTGCTGCA CAGCAATGTCTATGCTGGATGCAAGGTGCCATCTTACTCAGCCTGCCAGT CAGCATCACCAGCATCACCAGCATCACCGTAACGTCACCTCAACCTAACG ATGCTTCTGTGGAAGTGGGCTTGCAGAAGTGGCAGTGACAGCCAGATCAC CACTCGGCACCTTTCCTGGCCACTCTGCTCTGTCTGTTGAGAGGGCATTC CGTTTGGTTATCAACACCAGCACCGGCCAAAGTTTTAAAACCTTGTGAGC ACGAAGCCCCGCTAACTTAAAGCAACGCAGGCTATGGTATATGATGGCAT ATTGGGGGTGGTCTTGGGTGCTGTCATGGAAAGAATGGGGCTGCAGGGAC GAGTAATGGCTCCGTACCCAGGCCAGACACTGGCTGCCGATGCTGTCAAA AAGTCCGTGCAGTTCCAATCTTCTCCTTAATCTTCTCCTTTGCTTGCTGC TTTTATTGCCTCTCTTGCCATGGTCGATGGCCAGCCTTCATTCTGTAAGA AAGCTGAGCTAACCTCTGTCACTCCCAGGTTCAACTTCCCAGAAGAGACG GTAAAGCAGCTGCTGATTGATTTCCCCACTAACATGATCAATACTTACAA GGATGAAAGCACAGCAGGGGACAAGGTGGTAGAAGGTAAGCAAACAGCCG GGAGGGGGTGCCTTTGTGCCGGTGTGCCGGCCATGACACCGTGTGTGTGT GCATTTTCGCTTGTACTTTGTGTGTTCACTCCTCTTTCGGCTATTCCTTA CTGTCAGCGGCATTCCTAGGTCACTTGCCTCCCAATACGGCCACATTCAT GGTACAGTTTGGTGCTGTGGGGATGAATTGGAGCTGAAGCATATAGCTCA CCCCGCTCTTTGTAATTCATTGCCTGTGCCTCTGCAGTAAAAAAAGAGAT GGAGAAGTTCATTTCCATTATGGACAAGAAAGGTGATAAAGTAACAAAGG CGGCCAAGGAAAAGATGATCAAAGCCAAGAAGGAGCGACTTGCCAGAACT ATAGAGAGGCCTCAGCCATCCCAGGTTATGCCATACTCACATCACATGCC CGGCCCTTAATTCTGACTCACTGACTGGACGCTCGGTTTCTTGTCCTCTG ACTTGAGTAGATCAGGCGGTGGCTTCGAGAACAGTGTGACAGCCTCATCA TAGCAACTCTGGACGACCCGCTAGATGCTCTCACGCACCTGATACCACAC CTGGCTGTGGGCCGCCCGTTTGTGGTGTACAGCGAGTTTATCCAGCCCCT TCTTCCGTGTTTTGAGTTTGTCAAGGTAGGGCTACCAGCACAAAAACCCC ACGCACTGCTTTGAAAAGAAGCTATGCATTGGTTGGCGTCATGGGTGCAA GTGCTGCCCCTCACGCAGATGGCTTTACTGCTAATCTTCAAGGCCTGAAC CCTGAAAGTCACTCATCCAATAACCCAGGATGAAGGCCTCGCTGTCAGAG TGAGGCTCATGGATGCTTTTTACAGGGAGCACCAGGTGACTGCCTGAATT TGCCAGCCAGCTTGCAGCAGTCTGGGTTACCAGTGAAATGAAATGACAAG ACTCCTCAGACATCCTCTTCTGCCCTCCTCCATTAAGCGCATTGATAGGC TGCTCTAGCGTCTAATGCTTTGCTGCCACTTCTGCAGATGGTGCCAGGGA GGACTCACCCCAAGATGGACATGAGCTCACTGGGGGGCTTTATTCTGACG GGCTTCAAGGTGGAGCCTCCTGGTGACAAGGCTGAGCGTCCCAACAAGGA CAAGAAGCGCCTGGCGGGCAGCTACCAGTATAAGAAGCGCAGGCAAAAGT ACTGATTAGTACTGATGACTAGTGCTGGTTAGCTAGGCCAAGGAGGAGGT AGAAGTAACTGGCAAGATCAAGATGGGAGGACGGGGCATCACCCAGGCTC AGAATGAT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_987:6625..10732-

>mRNA_C-australica_Contig_987.1.4 ID=mRNA_C-australica_Contig_987.1.4|Name=mRNA_C-australica_Contig_987.1.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1356bp|location=Sequence derived from alignment at C-australica_Contig_987:6625..10732- (Chrysoparadoxa australica CS_1217)
ATGGAGGTGTGCTTGCGGGGCCACCACTGCATAGCGAAGAACTCCGATGG
ACGCAAGACGTTTGTGGTCGCTGATGGAAGCTGCCAGCTCCTCAAGAGCT
TTGGCAGAACGAAAATCAGTATGGGTCCTTTGGTTGGGGCGCCGTATGAG
GCAGTATTCGAATTTACTGGGGGCAAGCTGAAGCGAGTAGAAGGCACACT
GATGTTGGAGGATGGGGATGACAAATCTTTTGGGGAGTGGAAAGGCTTCA
ATGCACTTGATACGGAGCGCGACAACCGACACGTGATAGATGACAATAGA
GCCCAGCAGTTGACACCAGAGGAGGTGAAAAAGATGCAAGATGCTGGTAC
CAGTGGTACCGAAATAATCAAGGCCTTGGCTGAGAACTCTGCAACCTTTC
AATCCAAGACTGAGTTTTCCCAGCAGAAATGGCTGGCAAAGAAGTCACAG
AAATACTGCCCCAGAATGCGCCTGGTGAAGTGCACAGCAGAGACTGTGTG
CGAGGCATACCAAGAGAAGAAGACTAGACAGATGGCGGGTCTCCTGGGCA
GCACGCTGGGTTTGATTTTGCTGCACAGCAATGTCTATGCTGGATGCAAG
GCTATGGTATATGATGGCATATTGGGGGTGGTCTTGGGTGCTGTCATGGA
AAGAATGGGGCTGCAGGGACGAGTAATGGCTCCGTACCCAGGCCAGACAC
TGGCTGCCGATGCTGTCAAAAAGTTCAACTTCCCAGAAGAGACGGTAAAG
CAGCTGCTGATTGATTTCCCCACTAACATGATCAATACTTACAAGGATGA
AAGCACAGCAGGGGACAAGGTGGTAGAAGTAAAAAAAGAGATGGAGAAGT
TCATTTCCATTATGGACAAGAAAGGTGATAAAGTAACAAAGGCGGCCAAG
GAAAAGATGATCAAAGCCAAGAAGGAGCGACTTGCCAGAACTATAGAGAG
GCCTCAGCCATCCCAGATCAGGCGGTGGCTTCGAGAACAGTGTGACAGCC
TCATCATAGCAACTCTGGACGACCCGCTAGATGCTCTCACGCACCTGATA
CCACACCTGGCTGTGGGCCGCCCGTTTGTGGTGTACAGCGAGTTTATCCA
GCCCCTTCTTCCGTGTTTTGAGTTTGTCAAGGATGAAGGCCTCGCTGTCA
GAGTGAGGCTCATGGATGCTTTTTACAGGGAGCACCAGATGGTGCCAGGG
AGGACTCACCCCAAGATGGACATGAGCTCACTGGGGGGCTTTATTCTGAC
GGGCTTCAAGGTGGAGCCTCCTGGTGACAAGGCTGAGCGTCCCAACAAGG
ACAAGAAGCGCCTGGCGGGCAGCTACCAGTATAAGAAGCGCAGGCAAAAG
TACTGA
back to top