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Homology
BLAST of mRNA_C-australica_Contig_986.7.3 vs. uniprot
Match: A0A835YWQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.810e-14 Identity = 67/171 (39.18%), Postives = 96/171 (56.14%), Query Frame = 1
Query: 241 QKYRVRCALLQSKLEELKRDAALQVQAASVKEEEKGVKLLQKHLKESEKEHDRVVAEIKSQSEQLRSDLGSSRREVMELSDYSESLKKRYTAAMVRLEGNLADLEIEFSRMEKEYIDARAAWQCKEDRYETGKQMYLNRSLLLQEELAKARDIRKDLKEENEKLREEVKDL 753
Q Y RC LLQ+KL EL+ + Q+ K E+ +L ++ E+E V ++ Q +L+S L +SR EV +LS Y+E+L+KRYT MVRLE N+ADLEIE +E ++ R W E + ++ Y RS LL+ E+ KAR D E NE+L E + L
Sbjct: 111 QLYINRCLLLQAKLVELREEN----QSVRRKVEQLSDELQRRPSPAEEEE----VGALRQQCSELKSALSASRAEVEDLSRYNEALRKRYTDQMVRLEANVADLEIELRALEADHARGRRTWAATEQSLKAEREKYRVRSTLLEAEVVKARQQLDDATELNERLTAENRQL 273
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1487 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| Cds size | 987 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588852.8867166-UTR-C-australica_Contig_986:15456..15488 | 1682588852.8867166-UTR-C-australica_Contig_986:15456..15488 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_986 15457..15488 - |
| 1682588852.9717822-UTR-C-australica_Contig_986:17232..17277 | 1682588852.9717822-UTR-C-australica_Contig_986:17232..17277 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_986 17233..17277 - |
| 1682588852.9821923-UTR-C-australica_Contig_986:17355..17439 | 1682588852.9821923-UTR-C-australica_Contig_986:17355..17439 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_986 17356..17439 - |
| 1682588852.9927273-UTR-C-australica_Contig_986:17493..17832 | 1682588852.9927273-UTR-C-australica_Contig_986:17493..17832 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_986 17494..17832 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588852.8970191-CDS-C-australica_Contig_986:15488..15791 | 1682588852.8970191-CDS-C-australica_Contig_986:15488..15791 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_986 15489..15791 - |
| 1682588852.9095778-CDS-C-australica_Contig_986:15899..16020 | 1682588852.9095778-CDS-C-australica_Contig_986:15899..16020 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_986 15900..16020 - |
| 1682588852.9198527-CDS-C-australica_Contig_986:16190..16288 | 1682588852.9198527-CDS-C-australica_Contig_986:16190..16288 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_986 16191..16288 - |
| 1682588852.9307141-CDS-C-australica_Contig_986:16428..16596 | 1682588852.9307141-CDS-C-australica_Contig_986:16428..16596 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_986 16429..16596 - |
| 1682588852.9410055-CDS-C-australica_Contig_986:16718..16860 | 1682588852.9410055-CDS-C-australica_Contig_986:16718..16860 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_986 16719..16860 - |
| 1682588852.9512048-CDS-C-australica_Contig_986:17004..17105 | 1682588852.9512048-CDS-C-australica_Contig_986:17004..17105 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_986 17005..17105 - |
| 1682588852.9615111-CDS-C-australica_Contig_986:17178..17232 | 1682588852.9615111-CDS-C-australica_Contig_986:17178..17232 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_986 17179..17232 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_986.7.3 >prot_C-australica_Contig_986.7.3 ID=prot_C-australica_Contig_986.7.3|Name=mRNA_C-australica_Contig_986.7.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=329bp
MELSDYSESLKKRYTAAMVRLEGNLADLEIEFSRMEKEYIDARAAWQCKE
DRYETGKQMYLNRSLLLQEELAKARDIRKDLKEENEKLREEVKDLLKAEV
ELKALVSKAGAGQGASPSSASAVVEVEVVDQAGGGSKAADSSALESDSFK
ADPQKGALDEVEEQYKGVVASMQQRLDSEIQKCAALERDGTRARRKLFSM
QSECDDMADQWDQDVAQLKDLMKRQAEQFGLESEGLSAELAAAVEANESL
KKELKELRLALEGSRATRNELKLLQQGDTDQRILQKQKQKHGGKRKIKKG
FRKVQVESVLSSVIELALPQSIPNPFAG* back to topmRNA from alignment at C-australica_Contig_986:15457..17832- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_986.7.3 ID=mRNA_C-australica_Contig_986.7.3|Name=mRNA_C-australica_Contig_986.7.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2376bp|location=Sequence derived from alignment at C-australica_Contig_986:15457..17832- (Chrysoparadoxa australica CS_1217)
GCATGGGTTGGGAAAAGACTTGTTCCTGGGGGTCATCAACATCAAGCCCC
CTGTGCAAGAGGGCTGCTGGCGCCGCAATTTTCGCTGCGGCTCTCTCGAG
CTGACCCCCCCCCCCAGTCGGAGACTAAAGATGAGGTAAGAGCAGGAGGG
AGAGAGGCAGGAAAGGGGGGAGAGACTGCAATTTTTCCCCAAGTGCCAGA
GCTTCCGCCACAACTTGCTTTACTCTAATATCAGGAGCTGCAGAAGTACC
GGGTGCGGTGCGCATTGCTTCAGAGCAAGCTTGAGGAGCTCAAGAGAGAT
GCTGCCCTGCAAGTGCAGGCAGCAAGCGTCAAGGAAGAGGTGGGTAAGGA
GGTGCATGGTATGCTGTGCAGCACCTGATGGTTGCCTTCTCAGGAGAAAG
GGGTCAAGCTCCTGCAGAAGCATTTGAAGGAGAGTGAGAAGGAGCATGAT
AGAGTGGTGGCTGAGATCAAGTCACAGGTAAGCGTTCCTCCAAACTGTGC
GATAATCTGTATATTAACTGTGACTGACTTGAGCTATTTACCAAATCAAT
AACAGAGCGAGCAACTCAGATCAGATTTGGGAAGTTCAAGAAGGGAGGTG
ATGGAGCTAAGTGACTACAGTGAAAGCCTCAAAAAGAGATACACTGCAGC
AATGGTATTACTGGCTCTAGAGTTGACATCTTGGCCAGTCAGTCCCCCCT
GAGGTGGCTCCTCTTCCTTCATTCTAGGTGCGACTAGAGGGTAACCTTGC
TGACCTTGAGATTGAGTTTTCCAGGATGGAGAAGGAATACATTGATGCAA
GGGCAGCGTGGCAGTGTAAGGAGGATAGGTAAGCTGTTTCAGAACTGGGG
GTGGGAGGGCCAATGAGTCATAAAGTTGCTCATCTGGGTCAGCCCTTTCC
ATATCTGCGGGGCCAAATTGATGCAGCACTTCCTTGTGCTTACCTCTGTT
CTCCCCGTTGGGCCTGTTCTAGGTACGAGACAGGGAAACAGATGTACTTG
AATAGGTCATTACTCCTACAGGAGGAGCTGGCAAAAGCTCGAGACATACG
CAAAGATTTAAAAGAAGAGAACGAAAAGCTTAGGGAGGAGGTTAAGGATC
TGCTTAAGGCGGAGGTATGCAGAGCCAAGAAAAGATATCTTGTCACTGAC
TGCTCGGCTGGTCTGCGGATGATGCGTACTGTCTGCACTCCCCGAGCCCT
ACTACAACCTTAAAATACTGCCTGCTGCTGTTGCAGGTGGAGCTGAAAGC
ATTAGTGAGTAAGGCTGGGGCTGGGCAAGGGGCATCACCATCTTCTGCTT
CAGCAGTTGTTGAGGTAGAGGTGGTGGATCAAGCGGGAGGAGGCAGTAAA
GCTGCAGATTCTTCGGCTTTGGAGTCAGACAGTTTTAAAGCTGATCCACA
AAAGGTAAGAGCTTAGTGGCAGGTGCCCTATGGTTTGTGGGCTGGTTCGT
GTGTTCCGGCCTGGATGGTTGGCTGGGGAGCAGTAATAATAGTGCTGTCA
CAGTCAAAATCTCTTCCTTGTTTGCATTGCTTGCGTCTCCAAAGGGAGCC
TTGGACGAAGTCGAAGAGCAGTATAAGGGAGTTGTGGCATCCATGCAGCA
AAGATTGGATAGCGAAATACAGAAATGCGCAGCTCTAGAGAGGTGATTAG
CTAAGTGAATAGCTGGGTGTTGGGCGCTGGTATAGTGTGACTAGTCACAT
CTGTTCGAACCAACAGTGATGGGTGAGTGATGTAATGTGTTGTTATAACA
GTTGCTAAAGCTTGGTCGTGTCTGCTTCTTTACTGTCTGACATTGTCGAT
GCTTTTGCATAGGGATGGAACCAGAGCAAGGAGAAAGCTCTTTAGTATGC
AAAGTGAATGTGATGATATGGCAGATCAGTGGGATCAGGATGTAGCACAA
CTTAAAGATCTGATGAAGAGGCAAGCCGAACAGGTAATGCTTCCAGCGCA
TACTGGCTCCTTCAGAACTGATACTCGTCCCAGTGAGCACTTAGTCACAG
CAACCTCCATTGGATTTGATTCTTGATTCTTGCTCGCGCAGTTTGGTTTG
GAGTCAGAGGGGCTCTCTGCTGAGCTTGCTGCTGCTGTGGAAGCCAACGA
GTCTCTGAAAAAAGAGCTAAAAGAGCTGAGACTGGCTTTGGAAGGAAGCA
GAGCCACAAGAAACGAACTGAAGCTCTTACAACAGGGTGACACTGACCAA
AGGATTTTGCAAAAGCAAAAGCAAAAGCATGGTGGCAAACGCAAAATCAA
GAAGGGCTTCAGGAAAGTGCAGGTAGAAAGTGTCTTGAGCTCCGTTATAG
AGCTAGCATTACCTCAATCCATTCCAAACCCTTTCGCTGGGTAGTTGCCT
GCCATGGGCCTCTATGAATGAATGCA back to topCoding sequence (CDS) from alignment at C-australica_Contig_986:15457..17832- >mRNA_C-australica_Contig_986.7.3 ID=mRNA_C-australica_Contig_986.7.3|Name=mRNA_C-australica_Contig_986.7.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=987bp|location=Sequence derived from alignment at C-australica_Contig_986:15457..17832- (Chrysoparadoxa australica CS_1217)
ATGGAGCTAAGTGACTACAGTGAAAGCCTCAAAAAGAGATACACTGCAGC
AATGGTGCGACTAGAGGGTAACCTTGCTGACCTTGAGATTGAGTTTTCCA
GGATGGAGAAGGAATACATTGATGCAAGGGCAGCGTGGCAGTGTAAGGAG
GATAGGTACGAGACAGGGAAACAGATGTACTTGAATAGGTCATTACTCCT
ACAGGAGGAGCTGGCAAAAGCTCGAGACATACGCAAAGATTTAAAAGAAG
AGAACGAAAAGCTTAGGGAGGAGGTTAAGGATCTGCTTAAGGCGGAGGTG
GAGCTGAAAGCATTAGTGAGTAAGGCTGGGGCTGGGCAAGGGGCATCACC
ATCTTCTGCTTCAGCAGTTGTTGAGGTAGAGGTGGTGGATCAAGCGGGAG
GAGGCAGTAAAGCTGCAGATTCTTCGGCTTTGGAGTCAGACAGTTTTAAA
GCTGATCCACAAAAGGGAGCCTTGGACGAAGTCGAAGAGCAGTATAAGGG
AGTTGTGGCATCCATGCAGCAAAGATTGGATAGCGAAATACAGAAATGCG
CAGCTCTAGAGAGGGATGGAACCAGAGCAAGGAGAAAGCTCTTTAGTATG
CAAAGTGAATGTGATGATATGGCAGATCAGTGGGATCAGGATGTAGCACA
ACTTAAAGATCTGATGAAGAGGCAAGCCGAACAGTTTGGTTTGGAGTCAG
AGGGGCTCTCTGCTGAGCTTGCTGCTGCTGTGGAAGCCAACGAGTCTCTG
AAAAAAGAGCTAAAAGAGCTGAGACTGGCTTTGGAAGGAAGCAGAGCCAC
AAGAAACGAACTGAAGCTCTTACAACAGGGTGACACTGACCAAAGGATTT
TGCAAAAGCAAAAGCAAAAGCATGGTGGCAAACGCAAAATCAAGAAGGGC
TTCAGGAAAGTGCAGGTAGAAAGTGTCTTGAGCTCCGTTATAGAGCTAGC
ATTACCTCAATCCATTCCAAACCCTTTCGCTGGGTAG back to top
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