mRNA_C-australica_Contig_986.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_986.2.1
Unique NamemRNA_C-australica_Contig_986.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_986.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_986contigC-australica_Contig_986:2190..2808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size273
Hectar predicted targeting categoryother localisation
Exons3
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.8433836-CDS-C-australica_Contig_986:2189..23141682588852.8433836-CDS-C-australica_Contig_986:2189..2314Chrysoparadoxa australica CS_1217CDSC-australica_Contig_986 2190..2314 +
1682588852.8521008-CDS-C-australica_Contig_986:2488..25601682588852.8521008-CDS-C-australica_Contig_986:2488..2560Chrysoparadoxa australica CS_1217CDSC-australica_Contig_986 2489..2560 +
1682588852.863101-CDS-C-australica_Contig_986:2732..28081682588852.863101-CDS-C-australica_Contig_986:2732..2808Chrysoparadoxa australica CS_1217CDSC-australica_Contig_986 2733..2808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_986.2.1prot_C-australica_Contig_986.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_986 2190..2808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_986.2.1

>prot_C-australica_Contig_986.2.1 ID=prot_C-australica_Contig_986.2.1|Name=mRNA_C-australica_Contig_986.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=91bp
GREQRKSKHTREREGQGGAASEPKRVRGTVPSGSPGVETRKRAGADAQEA
PPAHSKAPSKGGKRTKAGAGTQKTSPARSKAPFKGGTGAR*
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mRNA from alignment at C-australica_Contig_986:2190..2808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_986.2.1 ID=mRNA_C-australica_Contig_986.2.1|Name=mRNA_C-australica_Contig_986.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=619bp|location=Sequence derived from alignment at C-australica_Contig_986:2190..2808+ (Chrysoparadoxa australica CS_1217)
GGAAGAGAACAGCGGAAATCAAAACACACCCGGGAACGTGAAGGGCAGGG
TGGTGCAGCCAGCGAGCCCAAGAGGGTCAGGGGCACAGTTCCAAGTGGCA
GCCCCGGTGTCGAAACACGAAAGAGGTGAGCCTGAATGGTTGATCCTAAC
CACCATTCCCACGTCAACCAGCTCCTAATGCTGACCTAACCCTAACCCTA
ACCCTAAAACCCAATGCTTGAGACTCCCTTATGCTGCGCGTTCTTAATCT
AATTCATTTACCTTGCTTTCTGCTCTTTCTCTCTCTCTCTCTCTCTCAGG
GCTGGTGCTGATGCACAAGAGGCACCCCCTGCTCACTCCAAGGCTCCTTC
CAAGGGTGGGAAGAGGACAAAGTGAGTCTGCCCTATGTCATTCATTCTTG
CCTCAAACTGGTCCTTCACTGCTACCGCCTAGCTCCTAATGCTGACCTAA
GCGTAACCCTAAAACCCAATGCTTGAGACTTCCTTACGCTGCGCCTTCTT
AATCTAATTCATGTACCTTGCTTTGCTGCCCTCTCTCTCTCAGGGCTGGT
GCCGGCACACAGAAGACATCCCCTGCTCGATCCAAGGCTCCTTTCAAGGG
TGGGACCGGCGCAAGGTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_986:2190..2808+

>mRNA_C-australica_Contig_986.2.1 ID=mRNA_C-australica_Contig_986.2.1|Name=mRNA_C-australica_Contig_986.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=273bp|location=Sequence derived from alignment at C-australica_Contig_986:2190..2808+ (Chrysoparadoxa australica CS_1217)
GGAAGAGAACAGCGGAAATCAAAACACACCCGGGAACGTGAAGGGCAGGG
TGGTGCAGCCAGCGAGCCCAAGAGGGTCAGGGGCACAGTTCCAAGTGGCA
GCCCCGGTGTCGAAACACGAAAGAGGGCTGGTGCTGATGCACAAGAGGCA
CCCCCTGCTCACTCCAAGGCTCCTTCCAAGGGTGGGAAGAGGACAAAGGC
TGGTGCCGGCACACAGAAGACATCCCCTGCTCGATCCAAGGCTCCTTTCA
AGGGTGGGACCGGCGCAAGGTGA
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