mRNA_C-australica_Contig_9854.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9854.1.1
Unique NamemRNA_C-australica_Contig_9854.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A222E0L9_9RHOB (Flagellar hook-associated protein 1 n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E0L9_9RHOB)

HSP 1 Score: 317 bits (812), Expect = 1.570e-104
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDA 528
            MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQ+L ALSDEVQAARQTADTSIGAQVETLNNALSRLDA
Sbjct:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQSLNALSDEVQAARQTADTSIGAQVETLNNALSRLDA 176          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A0B3S0K1_9RHOB (Flagellar hook-associated protein 1 n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3S0K1_9RHOB)

HSP 1 Score: 266 bits (679), Expect = 1.740e-84
Identity = 146/180 (81.11%), Postives = 160/180 (88.89%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALNVN 540
            MSLSGALYNAFSGL ANSRAAGLVSTNISNATTEGYGRRTL L PGAVGTTGGVRI+GT+R SDPVLTGDRM++DA+LA AT  F+FA RIEDLVG+SG PGSLT R+N FENALL A+SNPASTQRLELV+  ADSLA+AL  LSDEVQ+ARQTAD  I AQVETLN+ALSRLD+LN N
Sbjct:    1 MSLSGALYNAFSGLKANSRAAGLVSTNISNATTEGYGRRTLGLAPGAVGTTGGVRITGTVRHSDPVLTGDRMMSDATLAHATVGFEFASRIEDLVGDSGTPGSLTGRVNAFENALLTASSNPASTQRLELVANTADSLARALNGLSDEVQSARQTADNRIAAQVETLNSALSRLDSLNDN 180          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A238JNM3_9RHOB (Flagellar hook-associated protein 1 n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238JNM3_9RHOB)

HSP 1 Score: 257 bits (657), Expect = 3.240e-81
Identity = 141/180 (78.33%), Postives = 158/180 (87.78%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALNVN 540
            MSLSGALYNAFSGL ANSRAAGLVSTNISNATTEGYGRRTL LVPGA GTTGGVR++GTIRFSDPVLTGDRMV+DA L  A+   DFA+R+E LVG+SGVPGSLTDRINVFENALL A++NPAS QRLELV+ +AD LA+AL ALSDEVQ ARQ+ADT IGAQV+ LN  ++RLD +N N
Sbjct:    1 MSLSGALYNAFSGLKANSRAAGLVSTNISNATTEGYGRRTLGLVPGAAGTTGGVRMTGTIRFSDPVLTGDRMVSDAHLGQASIGLDFAKRLERLVGDSGVPGSLTDRINVFENALLTASANPASNQRLELVATSADGLARALNALSDEVQEARQSADTGIGAQVDKLNATIARLDEVNGN 180          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: UPI001C46CBD2 (flagellar hook-associated protein FlgK n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C46CBD2)

HSP 1 Score: 236 bits (603), Expect = 4.150e-73
Identity = 131/160 (81.88%), Postives = 141/160 (88.12%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSI 480
            MSLSGALYNAFSGL AN+ AAGLVSTN++NATTEGYGRRTL L PGAVGTTGGVR++GTIR SDPVLTGDRM++DA LA+AT  F+FA RIEDLVGESG PGSL DRIN FENALL AASNPASTQRLELVS  ADSLA+AL  LSDEVQAARQ AD SI
Sbjct:    1 MSLSGALYNAFSGLKANTLAAGLVSTNVANATTEGYGRRTLGLTPGAVGTTGGVRVTGTIRHSDPVLTGDRMMSDAGLANATVGFNFASRIEDLVGESGTPGSLMDRINSFENALLTAASNPASTQRLELVSDTADSLARALNVLSDEVQAARQNADNSI 160          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A238J6Y9_9RHOB (Flagellar hook-associated protein 1 n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238J6Y9_9RHOB)

HSP 1 Score: 219 bits (557), Expect = 3.250e-66
Identity = 119/178 (66.85%), Postives = 143/178 (80.34%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALN 534
            MSLSGALYNAFSGL AN+RAAGLVSTNISNATTEGYGRRTLEL PG++GT+GGVRI+G IR SDPVL  DR V+DASLA + T + +++R+E L+GES   GSL  R+  FEN+LL+AA+NPAS QRLE V+  A SL Q L ALSDE+Q +RQ AD++I  QV TLN  L+RLD +N
Sbjct:    1 MSLSGALYNAFSGLRANTRAAGLVSTNISNATTEGYGRRTLELTPGSLGTSGGVRIAGVIRHSDPVLVSDRRVSDASLAHSDTMYTYSKRLESLIGESDTAGSLVSRVTAFENSLLSAATNPASEQRLENVATAATSLTQTLNALSDEIQQSRQNADSAIADQVTTLNETLARLDQIN 178          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A238L3F2_9RHOB (Flagellar hook-associated protein 1 n=1 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238L3F2_9RHOB)

HSP 1 Score: 205 bits (522), Expect = 5.280e-61
Identity = 113/178 (63.48%), Postives = 143/178 (80.34%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALN 534
            MSL+GALYNAFSGL ANSRAA LVSTNISNATTEGYGRR L L PG++GT+GGVRI+G IR +DPV+  DR V+DA LA + + +  ++++E LVGESG  G+L  R+  FEN+LL+AA++P+S+QRLE V+ +A SL Q+L  LS E+Q +RQ ADTSIG QVE+LN AL RLDA+N
Sbjct:    1 MSLTGALYNAFSGLTANSRAAALVSTNISNATTEGYGRRELALTPGSLGTSGGVRIAGVIRHNDPVIIADRRVSDAELAYSNSMYTHSKQLETLVGESGSAGALATRVTAFENSLLSAATDPSSSQRLENVATSATSLTQSLHKLSTEIQQSRQAADTSIGQQVESLNIALGRLDAIN 178          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A0W7WG97_9RHOB (Flagellar hook-associated protein 1 n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WG97_9RHOB)

HSP 1 Score: 199 bits (505), Expect = 1.770e-58
Identity = 114/178 (64.04%), Postives = 130/178 (73.03%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALN 534
            MSL+GALYNAFSGL AN  AAGLVSTNI+NA TE YGRR L L PGA GT GGVR++GTIR  D +L GDR  +DA L  A   FDF +R+E  +G SG PGSL  R+N FEN LL AASNPASTQRLE V+  A  LA  L  LS EVQ ARQTAD +I +QVETLN+ + RLD +N
Sbjct:    1 MSLTGALYNAFSGLRANGLAAGLVSTNIANAATESYGRRELGLTPGAQGTHGGVRVTGTIRHEDAILQGDRRRSDARLGAARDAFDFVQRLETQLGTSGTPGSLGARVNAFENTLLTAASNPASTQRLEAVASAARDLATKLNDLSAEVQDARQTADRTIASQVETLNDTMQRLDRIN 178          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A1H3FDT7_9RHOB (Flagellar hook-associated protein 1 n=1 Tax=Citreimonas salinaria TaxID=321339 RepID=A0A1H3FDT7_9RHOB)

HSP 1 Score: 194 bits (493), Expect = 1.280e-56
Identity = 108/178 (60.67%), Postives = 132/178 (74.16%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALN 534
            MSLSGALYNAFSGL AN+RAA +VSTNISNATTE YGRR+LEL PG+ GT+GGVRI G +R  DPV+  DR ++DAS     + + F  R E  VG+S  PGSL DR   FENALL AASNPA+TQRLE+V+  AD+LA  L  LSD +Q AR+TAD +IG QVE +N+ +  L+ +N
Sbjct:    1 MSLSGALYNAFSGLRANTRAANVVSTNISNATTESYGRRSLELSPGSAGTSGGVRIDGVVRNVDPVVLADRRLSDASHGYGNSIYTFNTRFEAAVGDSNAPGSLVDRSLAFENALLTAASNPAATQRLEMVAQTADALADKLNTLSDGIQTARETADHTIGHQVERINDTMRSLERIN 178          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A0A7W6DN00_9RHOB (Flagellar hook-associated protein 1 n=1 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6DN00_9RHOB)

HSP 1 Score: 191 bits (485), Expect = 1.620e-55
Identity = 109/178 (61.24%), Postives = 132/178 (74.16%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALN 534
            MSLS AL NAF+GL AN+RAAG+VS+NISNA+ E YGRR L L   + G  GGV ++  IR SDP L  DRMV+DA LA +   F FA+R+ED+VGESG  GSLTDR+  FENALL+AASNP+STQRLELV+ NA  LA     LS EVQ +RQ+ADT+I  QV  LN+A+SRL  +N
Sbjct:    1 MSLSSALNNAFTGLKANTRAAGVVSSNISNASNEAYGRRELGLSALSAGNLGGVNVASVIRHSDPALLADRMVSDARLAYSNDMFTFAQRLEDMVGESGTAGSLTDRVTAFENALLSAASNPSSTQRLELVATNARDLATTFNELSKEVQVSRQSADTAISLQVRDLNDAVSRLKDIN 178          
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Match: A3K2Z7_9RHOB (Flagellar hook-associated protein 1 n=2 Tax=Sagittula TaxID=58842 RepID=A3K2Z7_9RHOB)

HSP 1 Score: 190 bits (482), Expect = 4.510e-55
Identity = 111/178 (62.36%), Postives = 130/178 (73.03%), Query Frame = 1
Query:    1 MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGTTGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGVPGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQAARQTADTSIGAQVETLNNALSRLDALN 534
            MSL+GAL  A SGL AN+RAA L+STNISNAT E YGRRTLEL     GT GGV ++G +R  DPVL  DRM +D+ LA     + FA+R+E LVGESG  GSLT RI  FENALL+A+SNPAS QRLELV+  A  L  A+  LS+EVQ ARQTADT+I  QV TLN A+SRL A+N
Sbjct:    1 MSLTGALNAAVSGLKANTRAASLISTNISNATNEAYGRRTLELNALGSGTRGGVLVAGVVRQYDPVLMADRMASDSQLAGGNDMYAFAKRMETLVGESGTSGSLTSRITAFENALLSASSNPASAQRLELVAVTATDLTNAVNDLSNEVQLARQTADTTIAKQVSTLNAAVSRLAAIN 178          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9854.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E0L9_9RHOB1.570e-10498.86Flagellar hook-associated protein 1 n=3 Tax=Roseob... [more]
A0A0B3S0K1_9RHOB1.740e-8481.11Flagellar hook-associated protein 1 n=7 Tax=Roseob... [more]
A0A238JNM3_9RHOB3.240e-8178.33Flagellar hook-associated protein 1 n=1 Tax=Malipo... [more]
UPI001C46CBD24.150e-7381.88flagellar hook-associated protein FlgK n=2 Tax=Rho... [more]
A0A238J6Y9_9RHOB3.250e-6666.85Flagellar hook-associated protein 1 n=1 Tax=Pelagi... [more]
A0A238L3F2_9RHOB5.280e-6163.48Flagellar hook-associated protein 1 n=1 Tax=Pelagi... [more]
A0A0W7WG97_9RHOB1.770e-5864.04Flagellar hook-associated protein 1 n=1 Tax=Pontic... [more]
A0A1H3FDT7_9RHOB1.280e-5660.67Flagellar hook-associated protein 1 n=1 Tax=Citrei... [more]
A0A7W6DN00_9RHOB1.620e-5561.24Flagellar hook-associated protein 1 n=1 Tax=Sagitt... [more]
A3K2Z7_9RHOB4.510e-5562.36Flagellar hook-associated protein 1 n=2 Tax=Sagitt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9854contigC-australica_Contig_9854:314..853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog388399.SSE37_17128
Preferred nameflgK
PFAMsFlg_bb_rod,Flg_bbr_C
Model size540
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02396
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.39e-56
EggNOG OGsCOG1256@1|root,COG1256@2|Bacteria,1MV2M@1224|Proteobacteria,2TV1B@28211|Alphaproteobacteria
Descriptionflagellar hook-associated protein
Cds size540
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.8191144-CDS-C-australica_Contig_9854:313..8531682588852.8191144-CDS-C-australica_Contig_9854:313..853Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9854 314..853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9854.1.1prot_C-australica_Contig_9854.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9854 314..853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9854.1.1

>prot_C-australica_Contig_9854.1.1 ID=prot_C-australica_Contig_9854.1.1|Name=mRNA_C-australica_Contig_9854.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=180bp
MSLSGALYNAFSGLNANSRAAGLVSTNISNATTEGYGRRTLELVPGAVGT
TGGVRISGTIRFSDPVLTGDRMVADASLADATTRFDFARRIEDLVGESGV
PGSLTDRINVFENALLNAASNPASTQRLELVSYNADSLAQALTALSDEVQ
AARQTADTSIGAQVETLNNALSRLDALNVN
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mRNA from alignment at C-australica_Contig_9854:314..853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9854.1.1 ID=mRNA_C-australica_Contig_9854.1.1|Name=mRNA_C-australica_Contig_9854.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=540bp|location=Sequence derived from alignment at C-australica_Contig_9854:314..853+ (Chrysoparadoxa australica CS_1217)
ATGTCTCTTTCAGGCGCGCTTTACAATGCCTTCAGTGGGCTCAATGCCAA TTCTCGGGCTGCGGGCCTAGTGTCTACAAATATCTCTAACGCCACGACAG AAGGCTATGGACGACGAACGCTTGAGCTCGTCCCTGGGGCCGTCGGCACC ACCGGAGGTGTACGCATTTCGGGTACAATCCGCTTTTCGGACCCGGTGCT GACCGGCGACCGGATGGTTGCGGACGCCTCTCTTGCCGATGCCACGACCC GATTTGATTTCGCCCGCCGGATCGAGGATCTGGTGGGAGAGTCCGGGGTT CCCGGCTCACTCACCGACCGGATCAACGTGTTCGAGAATGCGCTGTTGAA CGCGGCGTCCAACCCTGCGTCGACCCAGCGGCTCGAGCTTGTATCATACA ATGCGGATTCTTTGGCGCAGGCTCTCACCGCTCTGTCGGATGAGGTGCAG GCGGCCAGACAAACCGCAGACACCAGCATCGGCGCGCAGGTCGAAACCTT GAACAACGCGCTGTCGCGGCTGGACGCGCTGAATGTCAAT
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Coding sequence (CDS) from alignment at C-australica_Contig_9854:314..853+

>mRNA_C-australica_Contig_9854.1.1 ID=mRNA_C-australica_Contig_9854.1.1|Name=mRNA_C-australica_Contig_9854.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=540bp|location=Sequence derived from alignment at C-australica_Contig_9854:314..853+ (Chrysoparadoxa australica CS_1217)
ATGTCTCTTTCAGGCGCGCTTTACAATGCCTTCAGTGGGCTCAATGCCAA
TTCTCGGGCTGCGGGCCTAGTGTCTACAAATATCTCTAACGCCACGACAG
AAGGCTATGGACGACGAACGCTTGAGCTCGTCCCTGGGGCCGTCGGCACC
ACCGGAGGTGTACGCATTTCGGGTACAATCCGCTTTTCGGACCCGGTGCT
GACCGGCGACCGGATGGTTGCGGACGCCTCTCTTGCCGATGCCACGACCC
GATTTGATTTCGCCCGCCGGATCGAGGATCTGGTGGGAGAGTCCGGGGTT
CCCGGCTCACTCACCGACCGGATCAACGTGTTCGAGAATGCGCTGTTGAA
CGCGGCGTCCAACCCTGCGTCGACCCAGCGGCTCGAGCTTGTATCATACA
ATGCGGATTCTTTGGCGCAGGCTCTCACCGCTCTGTCGGATGAGGTGCAG
GCGGCCAGACAAACCGCAGACACCAGCATCGGCGCGCAGGTCGAAACCTT
GAACAACGCGCTGTCGCGGCTGGACGCGCTGAATGTCAAT
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