mRNA_C-australica_Contig_9851.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9851.1.1
Unique NamemRNA_C-australica_Contig_9851.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: A0A3D2IJN4_9BACT (Uncharacterized protein n=2 Tax=Balneola sp. TaxID=2024824 RepID=A0A3D2IJN4_9BACT)

HSP 1 Score: 397 bits (1021), Expect = 7.660e-139
Identity = 205/217 (94.47%), Postives = 213/217 (98.16%), Query Frame = 1
Query:    1 SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAGTSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYALASDAEVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLNNNDMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSKKKLTEIELSLIKKNITVDSDQEIEFYLNVLKQFFPNLSEEEIKKALDSN 651
            SEQK+IDAEK+KIMIGLKEDLEYFRIYFPDFAGTSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYALASDA+VINFELNSAIAEIYQELKKLEHAELLLTEIAM+Y+AVP +L N DMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFS+KKL EIELSLIKKNITVDS+QEIEFYLNVLKQFFPNLSEEEIKKALDSN
Sbjct:   40 SEQKKIDAEKEKIMIGLKEDLEYFRIYFPDFAGTSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYALASDADVINFELNSAIAEIYQELKKLEHAELLLTEIAMKYEAVPAELKNKDMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSEKKLAEIELSLIKKNITVDSNQEIEFYLNVLKQFFPNLSEEEIKKALDSN 256          
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: A0A2D8CKJ0_9BACT (Uncharacterized protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CKJ0_9BACT)

HSP 1 Score: 228 bits (580), Expect = 8.600e-72
Identity = 114/214 (53.27%), Postives = 159/214 (74.30%), Query Frame = 1
Query:    1 SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAGTSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYALASDAEVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLNNNDMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSKKKLTEIELSLIKKNITVDSDQEIEFYLNVLKQFFPNLSEEEIKKAL 642
            +E +RIDAEKQKI+ G+KE+LEYFRI+FP FAG   V E    I+ + Y +FS WRFIQPQY+Y AIEY+L + AE+I+++LN+ ++ IY+E++KLEHAE L+T ++M+Y+A+P  L NN     A +NN LNF RF  R  DRA IM R+A++SA+ LP IN QF  + L +IELSLI +NI+  S+ E+E  +  ++ FFPNLSEEEI++A+
Sbjct:   40 NEDRRIDAEKQKILTGVKEELEYFRIFFPGFAGNDAVAERNVLIQQDEYDDFSNWRFIQPQYNYTAIEYSLGAPAEIIDYDLNADLSTIYREIRKLEHAEELMTTLSMEYKAIPDGLENNAAVQFADENNLLNFVRFNSRADDRARIMNRLADLSAEILPNINSQFPPEYLKDIELSLISENISASSEAELEATIPAVQNFFPNLSEEEIRQAI 253          
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: A0A1E5T677_9BACT (Uncharacterized protein n=1 Tax=Roseivirga misakiensis TaxID=1563681 RepID=A0A1E5T677_9BACT)

HSP 1 Score: 137 bits (345), Expect = 2.440e-36
Identity = 78/220 (35.45%), Postives = 138/220 (62.73%), Query Frame = 1
Query:    1 SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAG--TSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYAL-ASDAEVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLNNN--DMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSKKKLTEIELSLIKKNITVDSDQEIEFYLNVLKQFFPNLSEEEIKKALD 645
            +E+  I  EK+K+++GLK +LE FR  F  FA   + +V+EW    +      +  WR+I+PQY++  IEYAL     ++++FEL + +++IY E+KKLEH E LLTE+ M+Y  +P DL+      A+LA++N F +F +F +   DRA  ++RV + S++ + +IN++   +K   ++ +L++K +++    EI+F   +  Q+FP  S+E+ ++ LD
Sbjct:   37 AEKTNIKKEKEKVLVGLKLELEEFRTGFERFADFQSGKVKEWDSLFRVGEVATYYDWRYIEPQYNFTIIEYALNQKGTDIVSFELYTMLSQIYLEIKKLEHTERLLTELGMKYNIIPNDLDKTKGQGAILAAENRF-HFYKFKNFSRDRAGELRRVWQASSEVIKLINEEIGPEKARVVDTALLEKYVSLGV--EIDFIKELFDQYFPQYSDEDFQQMLD 253          
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: A0A1E5STZ1_9BACT (Uncharacterized protein n=2 Tax=unclassified Roseivirga TaxID=2626142 RepID=A0A1E5STZ1_9BACT)

HSP 1 Score: 134 bits (338), Expect = 2.970e-35
Identity = 75/220 (34.09%), Postives = 136/220 (61.82%), Query Frame = 1
Query:    1 SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAG--TSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYAL-ASDAEVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLN--NNDMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSKKKLTEIELSLIKKNITVDSDQEIEFYLNVLKQFFPNLSEEEIKKALD 645
            +E  +ID EK+K+++GLK +LE FR  F  FA     +V+EW           +  WR+I+PQY+++ IEYAL     ++++FEL S+++E+Y ++KKLEHAE L+T++AM Y  +P DL+      AVLA++N F +F +F +   DRA ++ RV   S+  + +IN++   ++  E++  L+++   V+   +++F   +  Q+FP  S+++  + ++
Sbjct:   37 AEDNKIDKEKEKVLVGLKLELEEFRTTFERFADYQRDKVKEWDSLFLAGEVARYYDWRYIEPQYNFMIIEYALNQKGTDIVDFELYSSLSELYNQIKKLEHAERLMTDLAMSYNILPKDLDPKKGQGAVLAAENRF-HFYKFKNFARDRAGMLGRVWSASSNIIGLINEELGPERSKEVDAKLLERY--VNGGIQMDFVKEIFDQYFPQYSDDDFDRMIE 253          
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: UPI00167B4F0E (hypothetical protein n=1 Tax=Roseivirga thermotolerans TaxID=1758176 RepID=UPI00167B4F0E)

HSP 1 Score: 124 bits (310), Expect = 4.480e-31
Identity = 70/212 (33.02%), Postives = 125/212 (58.96%), Query Frame = 1
Query:    1 SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAG--TSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYALASDA-EVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLNNND--MAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSKKKLTEIELSLIKKNITVDSDQEIEFYLNVLKQFFPNLSE 621
            +E +++  EK+K++I LK++LE FR  FP FA     ++ EW   +     T++  WR+++PQY++  IEYA+  +  E+I+FEL  A+++++  +++LEHAE L+T    +Y  VP+ L  ND    +L ++N F  F RF      RA  ++ VAE++   L ++N+    +K  E+E+SL+K  I    D  + F   ++ ++FP  ++
Sbjct:   37 AEGQKLKDEKEKVLISLKKELEEFRTNFPGFASYQRGKLVEWDSLLDAGELTDYYNWRYLEPQYNFKVIEYAMNKEGTEIISFELYEALSKLHSRIRQLEHAERLMTNFGQRYNLVPSSLAENDPQRKILEAENRFA-FYRFIGAARLRAGKLENVAELAEDILKVVNEDLGPEKTREVEISLLKNYIRAGLD--VNFIRTIVDEYFPQYAQ 245          
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: A0A2D0N3W0_9BACT (Uncharacterized protein n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0N3W0_9BACT)

HSP 1 Score: 120 bits (301), Expect = 1.560e-29
Identity = 79/222 (35.59%), Postives = 123/222 (55.41%), Query Frame = 1
Query:    4 EQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAG--TSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYAL-ASDAEVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLN--NNDMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSKKKLTEIELSLIKKNIT---VDSDQEIEFYLNVLKQFFPNLSEEEIKKALD 645
            E+KRI +E +KI   LK +LE  R  FP  A    S+  EW        Y     WR+IQPQYD+  IEYAL A  + ++NFEL  ++ E+YQ +K+LEH ELLLT+I M+Y+ VP D N   +++A+  + N  L F +F D    RA ++  +   +   L +I+++  K     IE+ LI++N+       D         ++Q FP+L E +I++ ++
Sbjct:   63 EKKRIASEAEKIYTSLKVELEGIRFNFPQRAAYQRSRNVEWDSLWDQGGYAPLYQWRYIQPQYDFTTIEYALKAQGSTIVNFELYESLTELYQGIKRLEHQELLLTDIGMEYRNVPADSNMPTDELAIRNADNRLL-FYKFIDLSKLRAEVLGELVTHANNSLQIIDNRLGKDDRRRIEMDLIRENLPRLIAGRDLPEAMIKKQIEQQFPSLRERDIRQLME 283          
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: A0A850L7E3_9BACT (Uncharacterized protein n=1 Tax=Flavobacteriia bacterium TaxID=2044941 RepID=A0A850L7E3_9BACT)

HSP 1 Score: 108 bits (270), Expect = 3.310e-25
Identity = 66/219 (30.14%), Postives = 134/219 (61.19%), Query Frame = 1
Query:    1 SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAG--TSQVEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYALAS-DAEVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLNNNDMAVLAS-QNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMINDQFSKKKLTEIELSLIKKNI-TVDSDQEIEFYLNVLKQFFPNLSEEEIKKAL 642
            SEQ++ +A++ KIM  LK +LE  R  FP ++G   ++V EW+E++   R  ++  ++FIQPQYDY A+EYAL + + EV+ F++  ++  I + +++L  AE  +TE+++ ++ +P++   ++   L+   +N  +F +F      RA  +++++ ++ + L  IN +  ++   +IE+ LI+  + +++    +EF L  + +FFP + E EI++ L
Sbjct:   40 SEQEKNEAQQVKIMSSLKIELEGMRFRFPGYSGYQKNKVAEWKEALSENRVIDYYNYQFIQPQYDYHALEYALQTRETEVVPFDVFQSLLAIQRNVERLREAEDRMTEVSLLHRNLPSEYELSENEQLSRFADNLFHFSKFIRFAETRAQALEQLSALALEALDFINKELPEQVRHDIEIELIQDYMGSLNQIPPMEFALPQISKFFPEIPEGEIEEVL 258          
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Match: A0A401U5M4_9BACT (Uncharacterized protein n=1 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401U5M4_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 8.730e-16
Identity = 52/166 (31.33%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    1 SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAGTSQ--VEEWRESIKNERYTNFSTWRFIQPQYDYIAIEYALAS-DAEVINFELNSAIAEIYQELKKLEHAELLLTEIAMQYQAVPTDLNNNDMAVLASQNNFLNFKRFTDRYSDRASIMQRVAEMSAKHLPMIN 489
            SE  +  AE++K+M  L++++     YFP  A   +   ++W   +       F+ + ++QPQY+Y  IEYA+A+ ++++++F L+  + ++Y+ +K LE AE+ +T IA+QY A     +         QN FL F+RF     +RASIM+ + E++ +   MI+
Sbjct:   31 SENNKESAEREKVMRSLQQEISEIVYYFPSMAKYQENNSKKWDSLLNLNIVGEFNQYYYLQPQYNYSVIEYAIATRNSDIVDFRLHEQLLKLYKRIKMLEQAEVHMTNIALQYLAAEPKESQG------KQNLFL-FERFIGFSKNRASIMKDINELADETQKMIS 189          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9851.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A3D2IJN4_9BACT7.660e-13994.47Uncharacterized protein n=2 Tax=Balneola sp. TaxID... [more]
A0A2D8CKJ0_9BACT8.600e-7253.27Uncharacterized protein n=2 Tax=Balneolaceae TaxID... [more]
A0A1E5T677_9BACT2.440e-3635.45Uncharacterized protein n=1 Tax=Roseivirga misakie... [more]
A0A1E5STZ1_9BACT2.970e-3534.09Uncharacterized protein n=2 Tax=unclassified Rosei... [more]
UPI00167B4F0E4.480e-3133.02hypothetical protein n=1 Tax=Roseivirga thermotole... [more]
A0A2D0N3W0_9BACT1.560e-2935.59Uncharacterized protein n=1 Tax=Flavilitoribacter ... [more]
A0A850L7E3_9BACT3.310e-2530.14Uncharacterized protein n=1 Tax=Flavobacteriia bac... [more]
A0A401U5M4_9BACT8.730e-1631.33Uncharacterized protein n=1 Tax=Chryseotalea sanar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9851contigC-australica_Contig_9851:3..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size654
Hectar predicted targeting categoryother localisation
Exons1
Cds size654
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.730102-CDS-C-australica_Contig_9851:2..6561682588852.730102-CDS-C-australica_Contig_9851:2..656Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9851 3..656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9851.1.1prot_C-australica_Contig_9851.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9851 3..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9851.1.1

>prot_C-australica_Contig_9851.1.1 ID=prot_C-australica_Contig_9851.1.1|Name=mRNA_C-australica_Contig_9851.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=218bp
SEQKRIDAEKQKIMIGLKEDLEYFRIYFPDFAGTSQVEEWRESIKNERYT
NFSTWRFIQPQYDYIAIEYALASDAEVINFELNSAIAEIYQELKKLEHAE
LLLTEIAMQYQAVPTDLNNNDMAVLASQNNFLNFKRFTDRYSDRASIMQR
VAEMSAKHLPMINDQFSKKKLTEIELSLIKKNITVDSDQEIEFYLNVLKQ
FFPNLSEEEIKKALDSN*
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mRNA from alignment at C-australica_Contig_9851:3..656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9851.1.1 ID=mRNA_C-australica_Contig_9851.1.1|Name=mRNA_C-australica_Contig_9851.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=654bp|location=Sequence derived from alignment at C-australica_Contig_9851:3..656+ (Chrysoparadoxa australica CS_1217)
AGCGAACAAAAAAGAATTGACGCAGAAAAACAGAAGATAATGATCGGTCT AAAGGAAGATCTTGAATATTTCAGAATCTATTTTCCTGATTTTGCCGGTA CTTCCCAAGTAGAGGAATGGAGAGAGTCGATCAAGAATGAACGATATACA AACTTTTCAACATGGAGGTTTATACAACCTCAATACGACTACATCGCAAT AGAATATGCATTAGCCTCCGACGCTGAGGTAATTAATTTTGAACTTAATT CTGCAATTGCTGAGATCTATCAGGAGCTAAAAAAACTTGAACATGCTGAA TTACTGCTTACGGAGATAGCTATGCAGTATCAAGCAGTGCCTACTGATTT AAATAATAATGATATGGCTGTATTAGCCAGTCAAAATAATTTTCTGAATT TTAAGAGATTTACTGATCGGTATTCAGACAGAGCAAGCATAATGCAACGC GTCGCCGAAATGAGCGCTAAACATTTACCAATGATCAACGATCAATTCAG TAAAAAAAAGCTTACTGAAATTGAGTTATCACTTATCAAGAAAAACATTA CCGTTGATAGTGATCAAGAAATAGAATTCTATTTGAATGTTCTTAAGCAA TTCTTTCCGAATCTTAGTGAAGAAGAAATCAAAAAGGCTTTGGACAGTAA TTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_9851:3..656+

>mRNA_C-australica_Contig_9851.1.1 ID=mRNA_C-australica_Contig_9851.1.1|Name=mRNA_C-australica_Contig_9851.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=654bp|location=Sequence derived from alignment at C-australica_Contig_9851:3..656+ (Chrysoparadoxa australica CS_1217)
AGCGAACAAAAAAGAATTGACGCAGAAAAACAGAAGATAATGATCGGTCT
AAAGGAAGATCTTGAATATTTCAGAATCTATTTTCCTGATTTTGCCGGTA
CTTCCCAAGTAGAGGAATGGAGAGAGTCGATCAAGAATGAACGATATACA
AACTTTTCAACATGGAGGTTTATACAACCTCAATACGACTACATCGCAAT
AGAATATGCATTAGCCTCCGACGCTGAGGTAATTAATTTTGAACTTAATT
CTGCAATTGCTGAGATCTATCAGGAGCTAAAAAAACTTGAACATGCTGAA
TTACTGCTTACGGAGATAGCTATGCAGTATCAAGCAGTGCCTACTGATTT
AAATAATAATGATATGGCTGTATTAGCCAGTCAAAATAATTTTCTGAATT
TTAAGAGATTTACTGATCGGTATTCAGACAGAGCAAGCATAATGCAACGC
GTCGCCGAAATGAGCGCTAAACATTTACCAATGATCAACGATCAATTCAG
TAAAAAAAAGCTTACTGAAATTGAGTTATCACTTATCAAGAAAAACATTA
CCGTTGATAGTGATCAAGAAATAGAATTCTATTTGAATGTTCTTAAGCAA
TTCTTTCCGAATCTTAGTGAAGAAGAAATCAAAAAGGCTTTGGACAGTAA
TTAA
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