mRNA_C-australica_Contig_985.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_985.3.1
Unique NamemRNA_C-australica_Contig_985.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_985.3.1 vs. uniprot
Match: D7FQA0_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA0_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.360e-25
Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 2 
Query:  140 PGYRTIRHGEASIASKILGPEHPTNEDSFASVLDISEELLGEGSPADSIAPLSSFFVVSDGHAGNGVSRMVRDELPKAFALSESFNSLDMPVADSLAGALVGGLKELETKIWDQAARGDPDSSGACLVAVALRGSHLCVANLGDCQALLLPPNGAPVELTK 622
            PGY  +R    S AS  L PEHPTNED  A V D    +L + +P  +  PL+  F V DGH G+G S+ V + L      S  + S+D P  ++LA A+  G+  +E    D + R   D+SG C   VA+RGS LC AN+GDCQA+L+   GA V L++
Sbjct:   53 PGYPCVRSSTFSSASPFLCPEHPTNEDR-ALVFDDMVSVL-KLAPTGTRGPLACLFGVFDGHGGDGASKFVANHLHHLIGRSAFYESIDYPADEALASAVEEGVASVEQAYTDWSKRSG-DTSGCCACVVAIRGSVLCAANVGDCQAILITDKGAIVSLSR 210
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BLAST of mRNA_C-australica_Contig_985.3.1 vs. uniprot
Match: A0A836CMW2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.430e-10
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2 
Query:  299 SFFVVSDGHAGNGVSRMVRDELPKAFALSESFNSLDMPVADSLAGALVGGLKELETKIWDQAARGDPDSSGACLVAVALRGSHLCVANLGDCQALL-LPPNGAPVELT 619
            S F V DGH G+  S+ + D L +    ++S+    + +   L GALV  LK  E K  D A + + D SGAC+V       H+CVAN+GDC A+L LP   + V+L+
Sbjct:    7 SCFAVFDGHGGSRCSQWLADNLEEDLRCADSWRQEGLTLPKRLKGALVQALKRAEYKYLDLAFK-ESDHSGACVVVGLYCEGHVCVANVGDCLAVLYLPGADSHVDLS 113
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_985.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQA0_ECTSI1.360e-2541.61PPM-type phosphatase domain-containing protein n=2... [more]
A0A836CMW2_9STRA9.430e-1038.89Phosphatase 2C-like domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_985contigC-australica_Contig_985:7083..7914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQA0
PFAMsPP2C
Model size773
Max annot lvl2759|Eukaryota
KEGG koko:K14803,ko:K17499,ko:K17506
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.83e-27
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size642
COG categoryT
BRITEko00000,ko01000,ko01009,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.1194496-UTR-C-australica_Contig_985:7082..70831682588852.1194496-UTR-C-australica_Contig_985:7082..7083Chrysoparadoxa australica CS_1217UTRC-australica_Contig_985 7083..7083 -
1682588852.150884-UTR-C-australica_Contig_985:7784..79141682588852.150884-UTR-C-australica_Contig_985:7784..7914Chrysoparadoxa australica CS_1217UTRC-australica_Contig_985 7785..7914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.1309762-CDS-C-australica_Contig_985:7083..75771682588852.1309762-CDS-C-australica_Contig_985:7083..7577Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 7084..7577 -
1682588852.1407137-CDS-C-australica_Contig_985:7636..77841682588852.1407137-CDS-C-australica_Contig_985:7636..7784Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 7637..7784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_985.3.1prot_C-australica_Contig_985.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_985 7084..7784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_985.3.1

>prot_C-australica_Contig_985.3.1 ID=prot_C-australica_Contig_985.3.1|Name=mRNA_C-australica_Contig_985.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=214bp
MKAPGYRTIRHGEASIASKILGPEHPTNEDSFASVLDISEELLGEGSPAD
SIAPLSSFFVVSDGHAGNGVSRMVRDELPKAFALSESFNSLDMPVADSLA
GALVGGLKELETKIWDQAARGDPDSSGACLVAVALRGSHLCVANLGDCQA
LLLPPNGAPVELTKVGEAQHISTSPSLSFPSHFRVFFPLALCLRYTGPMP
GRRRQEYARQAPR*
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mRNA from alignment at C-australica_Contig_985:7083..7914-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_985.3.1 ID=mRNA_C-australica_Contig_985.3.1|Name=mRNA_C-australica_Contig_985.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=832bp|location=Sequence derived from alignment at C-australica_Contig_985:7083..7914- (Chrysoparadoxa australica CS_1217)
GCAGAGACAGCCAAGCTCGTAGACGGGATCGCCGCCGCTTCCGCCACGGC
AGGATTCCCTTTTCCTCCTCTCCCCCTTCAACCCCCTCTTTCTCTCCCTC
CCCCCCAACTAACCTGGCCTTTGTGAGAAGATGAAAGCTCCGGGCTATCG
CACAATAAGGCATGGGGAGGCATCCATCGCGTCCAAAATCTTGGGGCCCG
AACACCCAACAAATGAAGACAGCTTTGCCAGCGTCCTGGATATTAGTGAA
GAGCTCCTGGGGGAAGGGTCGCCAGCTGGTAAGCCAAACAGCAAATAGTT
CCTGCCACTGTGCTTCTGACCTGCTTCTTCTCCACAGACTCTATAGCCCC
ACTGAGCTCCTTCTTTGTGGTGAGTGACGGACATGCAGGCAACGGGGTAT
CACGCATGGTAAGGGACGAGCTGCCCAAGGCATTTGCCCTCAGCGAAAGC
TTCAACTCGCTGGATATGCCAGTGGCCGATTCCTTGGCTGGTGCCTTGGT
GGGGGGATTGAAGGAGTTGGAGACAAAAATCTGGGACCAAGCAGCTCGTG
GTGACCCAGACAGCAGCGGGGCGTGCCTAGTTGCCGTGGCTCTGAGAGGA
TCCCACCTATGCGTTGCCAATCTTGGTGACTGCCAGGCGCTGTTGCTGCC
TCCCAACGGAGCTCCTGTGGAGCTGACCAAGGTGGGTGAGGCCCAGCATA
TTTCCACTTCACCCTCCTTGTCGTTCCCCTCTCATTTCCGAGTCTTTTTT
CCTTTGGCCCTTTGCCTCAGATACACAGGTCCAATGCCAGGGAGGAGAAG
GCAAGAATACGCGAGGCAGGCGCCAAGGTGAC
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Coding sequence (CDS) from alignment at C-australica_Contig_985:7083..7914-

>mRNA_C-australica_Contig_985.3.1 ID=mRNA_C-australica_Contig_985.3.1|Name=mRNA_C-australica_Contig_985.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=642bp|location=Sequence derived from alignment at C-australica_Contig_985:7083..7914- (Chrysoparadoxa australica CS_1217)
ATGAAAGCTCCGGGCTATCGCACAATAAGGCATGGGGAGGCATCCATCGC
GTCCAAAATCTTGGGGCCCGAACACCCAACAAATGAAGACAGCTTTGCCA
GCGTCCTGGATATTAGTGAAGAGCTCCTGGGGGAAGGGTCGCCAGCTGAC
TCTATAGCCCCACTGAGCTCCTTCTTTGTGGTGAGTGACGGACATGCAGG
CAACGGGGTATCACGCATGGTAAGGGACGAGCTGCCCAAGGCATTTGCCC
TCAGCGAAAGCTTCAACTCGCTGGATATGCCAGTGGCCGATTCCTTGGCT
GGTGCCTTGGTGGGGGGATTGAAGGAGTTGGAGACAAAAATCTGGGACCA
AGCAGCTCGTGGTGACCCAGACAGCAGCGGGGCGTGCCTAGTTGCCGTGG
CTCTGAGAGGATCCCACCTATGCGTTGCCAATCTTGGTGACTGCCAGGCG
CTGTTGCTGCCTCCCAACGGAGCTCCTGTGGAGCTGACCAAGGTGGGTGA
GGCCCAGCATATTTCCACTTCACCCTCCTTGTCGTTCCCCTCTCATTTCC
GAGTCTTTTTTCCTTTGGCCCTTTGCCTCAGATACACAGGTCCAATGCCA
GGGAGGAGAAGGCAAGAATACGCGAGGCAGGCGCCAAGGTGA
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